Gene

KWMTBOMO16220

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr28(-):2161559-2162478      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.744

CDS

ATGATGATCGTAGATCGTGCTAACATCAACCAACCGGAAGTCCAACATATAGCGGGATGCGAGGTAGTTAATAGCTATGTATATCTAGGCTCCACTATCACCAACGCTGGAGGCTGCGAAGATGAGATCCGAAGACGTTGTGCCGTGACAAGATCCTCAGTTGAGAGGCTAACAAAGATTTGGAGAGACCGCAGAATAACCAAAAATACAAAAGTTCGGTTAATGAGATGCCTGGTCTTTCCAATCTTTCTGTATGGGGCTGAGACGTGGACGCTGAGGATGCAAGACCGTCGTAAGATCGACGCACTAGAAATGTGGTGTTGGAGACGTCTCCTCAGAATTCCGTGGACCGCGCACCGTACCAACATTTCGATCCTGAAAGAGCTCAACATCAAGGAGAGACTATCGTCAACAGTCCAATTACGAATCCTCAAGTTCTTCGGGCACATCGCTCGTAATGAGGACTCCATTGAGCGGTTGGTGGTGCAAGGGAAAATCGAGGGCAAAAGATCTCGCGGACGATCTCCAACACGATGGACCGACCTCATAAAATCTGTTACTCACTCCAACATAAATGTTTGCTCTCACTCTGCGAAACATCGTGCCACATGGCGTCGCATCGCGAGAGCATCGGTATCGCAGGATCCGACTGATACACCACGACCACTCTGTCAAGAGTGTACGAATAGGAAAAATTGGTAA

Protein

MMIVDRANINQPEVQHIAGCEVVNSYVYLGSTITNAGGCEDEIRRRCAVTRSSVERLTKIWRDRRITKNTKVRLMRCLVFPIFLYGAETWTLRMQDRRKIDALEMWCWRRLLRIPWTAHRTNISILKELNIKERLSSTVQLRILKFFGHIARNEDSIERLVVQGKIEGKRSRGRSPTRWTDLIKSVTHSNINVCSHSAKHRATWRRIARASVSQDPTDTPRPLCQECTNRKNW

Uniprot

D7F162   D7F167   D7F175   D7F163   A0A3S2L0R7   D7F172   + More
D7F161   A0A2W1BGD9   D7F168   D5LB39   A0A2G8JE23   A0A2G8JVA1   A0A2G8K183   A0A2H1VU13   A0A2G8K796   A0A2G8JVI4   A0A2G8L6P4   A0A2H1V742   A0A3S3NR17   A0A3S3RLW1   W4YPU3   A0A2H1VNK5   A0A0B7BSZ9   A0A0B7BUR9   A0A0B7BT80   A0A0B7BVD9   H2YWZ6   A0A0B7BVD3   A0A0B7BSB6   W5NMM5   A0A3Q1LLH3   A0A3Q1MCX3   A0A3Q1LR75   A0A3Q1M4E7   A0A3S3P648   A0A3Q1LT03   H2YWZ5   W5MM77   A0A3S1HJZ0   O97916   A0A3Q1MDY8   A0A3Q1MXT5   A0A3Q1NB85   X1D4L4   A0A3Q1M2T8   A0A3Q1M4J9   A0A2H6KKM9   A0A3Q1M8I7   A0A3Q1MGA3   A0A3Q1MIT2   A0A3Q1M7G0   A0A3Q1MJK8   A0A3Q1MN71   A0A3Q1MQ02   A0A3Q1MMS2   A0A3Q1LT63   A0A3Q1N9K5   A0A3Q1NBK7   A0A3Q1LXQ5   A0A3Q1LWU3   A0A3Q1ML90   A0A3Q1NE26   A0A3Q1LKN4   F6R5D0   A0A3Q1MVY4   A0A3Q1N3Y9   A0A3Q1ML42   A0A3Q1MJZ2   A0A3Q1MVF7   A0A3Q1LQF3   A0A3Q1M6Y4   W4Y921   A0A3Q1LUA6   A0A3Q1NDI4   A0A3Q1LGI2   A0A3Q1MJR3   A0A061BKJ9   A0A3Q1NJH7  

Pubmed

20470440    28756777    29023486    19393038    10555285    24624126    + More
29078748   

EMBL

FJ265547    ADI61815.1    FJ265552    ADI61820.1    FJ265560    ADI61828.1    + More
FJ265548    ADI61816.1    RSAL01000289    RVE42931.1    FJ265557    ADI61825.1    FJ265546    ADI61814.1    KZ150203    PZC72267.1    FJ265553    ADI61821.1    GU815090    ADF18553.1    MRZV01002322    PIK33998.1    MRZV01001216    PIK39650.1    MRZV01000994    PIK41715.1    ODYU01004401    SOQ44236.1    MRZV01000817    PIK43880.1    MRZV01001207    PIK39730.1    MRZV01000196    PIK55924.1    ODYU01001007    SOQ36619.1    NCKU01012182    RWS00163.1    NCKU01008836    RWS01655.1    AAGJ04055194    ODYU01003523    SOQ42419.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    HACG01049255    CEK96120.1    HACG01049245    CEK96110.1    HACG01049249    CEK96114.1    AHAT01022938    NCKU01004395    RWS06003.1    AHAT01015286    RQTK01000360    RUS81011.1    AJ132772    CAA10770.1    BART01031562    GAH15691.1    BDSA01000081    GBE63537.1    AAGJ04161766    LK055282    CDR71995.1   

Proteomes

UP000283053    UP000230750    UP000285301    UP000007110    UP000007875    UP000018468    + More
UP000009136    UP000271974   

PRIDE

D7F162    D7F167    D7F175    D7F163    D7F172    D7F161    + More
D7F168    D5LB39   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F162   D7F167   D7F175   D7F163   A0A3S2L0R7   D7F172   + More
D7F161   A0A2W1BGD9   D7F168   D5LB39   A0A2G8JE23   A0A2G8JVA1   A0A2G8K183   A0A2H1VU13   A0A2G8K796   A0A2G8JVI4   A0A2G8L6P4   A0A2H1V742   A0A3S3NR17   A0A3S3RLW1   W4YPU3   A0A2H1VNK5   A0A0B7BSZ9   A0A0B7BUR9   A0A0B7BT80   A0A0B7BVD9   H2YWZ6   A0A0B7BVD3   A0A0B7BSB6   W5NMM5   A0A3Q1LLH3   A0A3Q1MCX3   A0A3Q1LR75   A0A3Q1M4E7   A0A3S3P648   A0A3Q1LT03   H2YWZ5   W5MM77   A0A3S1HJZ0   O97916   A0A3Q1MDY8   A0A3Q1MXT5   A0A3Q1NB85   X1D4L4   A0A3Q1M2T8   A0A3Q1M4J9   A0A2H6KKM9   A0A3Q1M8I7   A0A3Q1MGA3   A0A3Q1MIT2   A0A3Q1M7G0   A0A3Q1MJK8   A0A3Q1MN71   A0A3Q1MQ02   A0A3Q1MMS2   A0A3Q1LT63   A0A3Q1N9K5   A0A3Q1NBK7   A0A3Q1LXQ5   A0A3Q1LWU3   A0A3Q1ML90   A0A3Q1NE26   A0A3Q1LKN4   F6R5D0   A0A3Q1MVY4   A0A3Q1N3Y9   A0A3Q1ML42   A0A3Q1MJZ2   A0A3Q1MVF7   A0A3Q1LQF3   A0A3Q1M6Y4   W4Y921   A0A3Q1LUA6   A0A3Q1NDI4   A0A3Q1LGI2   A0A3Q1MJR3   A0A061BKJ9   A0A3Q1NJH7  

KEGG

105842503    no KO assigned | (RefSeq) uncharacterized LOC105842503

GO

GO:0004519   GO:0003964   GO:0016021   GO:0004197  

Length:

233

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

17.10246

Exp number, first 60 AAs:

0.03548

Total prob of N-in:

0.87800

inside

1  -  71

TMhelix

72  -  91

outside

92  -  233

 

 

Pi

250.188914

Theta

79.251898

Tajima's D

4.978188

CLR

1.230962

CSRT

0.999950002499875

Interpretation

Possibly Balancing Selection