Gene

KWMTBOMO16212

Pre Gene Modal

BGIBMGA013975

Annotation

AF443827_1_acheron?_partial_[Manduca_sexta]

Location

Bomo_Chr28(+):1965514-1967175      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.652

CDS

ATGGAGGGCACATCTCCCTCCAGTCCGCGTCCCAACGAGGACGAGGGGTTCGCCACCGACCGCCGCCCCTCCACAGACGACCACGCCGACTCTTCGGACTCGGCGTCTGATGCCGGCTCCGGCGGCGGCAAGGATTCAGGCTGCGAAGTTGCAACCGAGACCCAGGAACCGCCCTATACGCCACCGGACGAGGAATTAGCGAACAGAATTGTGTCACAAGTCGAGTTTTACTTCTCGGACGCGAATATTACGAAAGATGCGTTTTTGCTCAAACACGTCAGAAGGAATAAGGAAGGTTACGTCTCTCTCAAGCTGATCTCGAGCTTCAAGCGCGTCAAGCACCTCACGAAAGACTGGCGGGTGGTCGCTGAAGCCTTGAAGCGCTCGACTAAGTTGGAGATCAATGAATTAGGAACGAAATTGCGCAGGATAGACCCGCTCCCGGCCTACGATGAAACCACCCCCTCCAGGACTGTGGTGGCTGTCAGAATGCCTGTAGAAAAGCCGTCTGTCGAGAACGTATCCCGTTTGTTTGCTGGTTGCGGCGAGATTGCTCTAGTTCGAGTTCTGAGACCGGGGAATCCGGTGCCGGCAGACGTGCGCCAGTTCCTGAACAAAAATCCTAGTTTAGTAAACTGTGTGTGTGCTTTAGTTGAGTTCACGGAGTCCGAGTCGGCCAGGGAAGCGCTCCGGCTGCAGGCTCCGGGAGACGAAGGTATGCGAGTGTATGAATTAAATGGAGTGCCCCGGGAACCGAAGAGGAAAGCTCCTATACGACGACCCTCCGCGATACCGCAGCGCCGCCACGAGTGCGAATATTCGTCGTGCTGTAGCGGGTCAGAAGCCGAATATGACTACAGATACGGAGCCCCGTTCTACAGAAGGAACTCTAGTGGCTTCTTCGCTCCCCGGTCACCTGAGATCCAAACGTGGGTGCCGCGGCGGCCGTCCACTTGCAGTCACAGCTCGGATTCGGGCGTTTCGTTCTATTGCAACTCTCGGAGGGCATCGCAGGCGAGTACGGGCAGCACCAGCAGCGCTGAGGGTTGGCTCGCGCGTCGGTTGTCGGGCTGCTCACTGACAGGGACCGAGTGTGGCGGCCGGAGGTTGTCGTGTACGCCCCGCTTTGAGCCCCGGACGCCCGTAGTGCCCGACGGGACGAGGGGCTTCCACGCCGCCGCCCGCCAACGTAGAATCTCGGACCTCGCTCTGTACTCGCGCTAG

Protein

MEGTSPSSPRPNEDEGFATDRRPSTDDHADSSDSASDAGSGGGKDSGCEVATETQEPPYTPPDEELANRIVSQVEFYFSDANITKDAFLLKHVRRNKEGYVSLKLISSFKRVKHLTKDWRVVAEALKRSTKLEINELGTKLRRIDPLPAYDETTPSRTVVAVRMPVEKPSVENVSRLFAGCGEIALVRVLRPGNPVPADVRQFLNKNPSLVNCVCALVEFTESESAREALRLQAPGDEGMRVYELNGVPREPKRKAPIRRPSAIPQRRHECEYSSCCSGSEAEYDYRYGAPFYRRNSSGFFAPRSPEIQTWVPRRPSTCSHSSDSGVSFYCNSRRASQASTGSTSSAEGWLARRLSGCSLTGTECGGRRLSCTPRFEPRTPVVPDGTRGFHAAARQRRISDLALYSR

Uniprot

H9JWR1   Q8I9V8   A0A0N0PBE1   A0A2H1WYA8   A0A0N0PA37   A0A0L7L4A1   + More
A0A2W1BNT1   D6WR35   A0A1W4WYA3   U4U1D4   V9IKZ9   A0A2A3E4T8   A0A154PPV0   A0A088A5N0   A0A182GYZ4   A0A182H9R2   A0A0P5GEL8   A0A0P5ZJK4   A0A0P4WXJ5   A0A0P5VTI9   A0A0P5BFZ5   A0A0P4Z1S5   A0A0P4Z1M7   A0A0P4Z686   A0A0P5ALD7   A0A0P5BLX0   A0A0N8CGV7   A0A0N7ZEM2   A0A0P5PBV9   A0A0P5DWX2  

Pubmed

19121390    26354079    26227816    28756777    18362917    19820115    + More
23537049    26483478   

EMBL

BABH01018484    AF443827    AAN76709.1    KQ460955    KPJ10245.1    ODYU01011989    + More
SOQ58049.1    KQ459166    KPJ03526.1    JTDY01003058    KOB70235.1    KZ150112    PZC73323.1    KQ971354    EFA06016.1    KB631871    ERL86857.1    JR052549    AEY61720.1    KZ288400    PBC26276.1    KQ435022    KZC13925.1    JXUM01098518    KQ564427    KXJ72293.1    JXUM01121317    KQ566487    KXJ70092.1    GDIQ01242042    JAK09683.1    GDIP01044161    JAM59554.1    GDIP01253608    JAI69793.1    GDIP01095549    JAM08166.1    GDIP01185684    JAJ37718.1    GDIP01220638    JAJ02764.1    GDIP01220684    JAJ02718.1    GDIP01229235    JAI94166.1    GDIP01197675    JAJ25727.1    GDIP01197674    GDIP01132992    JAJ25728.1    GDIP01132991    JAL70723.1    GDIP01252961    JAI70440.1    GDIQ01130790    JAL20936.1    GDIP01150146    JAJ73256.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000037510    UP000007266    UP000192223    + More
UP000030742    UP000242457    UP000076502    UP000005203    UP000069940    UP000249989   

PRIDE

H9JWR1   

Pfam

PF05383   La        + More
PF12901   SUZ-C

Interpro

IPR002344   Lupus_La        + More
IPR006630   La_HTH       
IPR036390   WH_DNA-bd_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR024642   SUZ-C       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR035979   RBD_domain_sf       
IPR034880   LARP6_RRM       
IPR000504   RRM_dom       

SUPFAM

SSF46785   SSF46785        + More
SSF54928   SSF54928       

Gene 3D

1.10.10.10     3.30.70.330    

CDD

cd12289  RRM_LARP6

ProteinModelPortal

H9JWR1   Q8I9V8   A0A0N0PBE1   A0A2H1WYA8   A0A0N0PA37   A0A0L7L4A1   + More
A0A2W1BNT1   D6WR35   A0A1W4WYA3   U4U1D4   V9IKZ9   A0A2A3E4T8   A0A154PPV0   A0A088A5N0   A0A182GYZ4   A0A182H9R2   A0A0P5GEL8   A0A0P5ZJK4   A0A0P4WXJ5   A0A0P5VTI9   A0A0P5BFZ5   A0A0P4Z1S5   A0A0P4Z1M7   A0A0P4Z686   A0A0P5ALD7   A0A0P5BLX0   A0A0N8CGV7   A0A0N7ZEM2   A0A0P5PBV9   A0A0P5DWX2  

PDB

2MTF     E-value=2.98064e-29,     Score=320

KEGG

101745593    K18733 la-related protein 6 | (RefSeq) la-related protein 6

GO

GO:0003723   GO:1990904   GO:0005634   GO:0006396   GO:0030529   GO:0008233   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

Length:

407

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00366

outside

1  -  407

 

 

Pi

210.088851

Theta

191.062251

Tajima's D

0.313397

CLR

0.79911

CSRT

0.464676766161692

Interpretation

Uncertain