Gene

KWMTBOMO16206

Pre Gene Modal

BGIBMGA009519

Annotation

Yokozuna_[Bombyx_mori]

Location

Bomo_Chr28(+):1813964-1816638      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 3.641

CDS

ATGTGCTATGATGATGAAAGCAACTTACAGCAATTTTTCCTAAAATTTGAAGGAATTCTTAGCGAATTAGCGGCAATCAACGTAAGCGTCGAAGTAGAAGACCAAATTTGCTATCTGCTGTCTTCTTTACCAAAGATATACGATCAATTAATTACATCAATTGAGACTATGGGTTCCGAGAAACAACTGAACATAGAATTTGTTAAAGCAAGACTACTCGATATGGAGACAAAGTTAAAAATGGACAGAAATAGTGAAGGTTATGAGAATAATGCCTTCATCACGTGCCACTCCTGCGGAAAACGTGGACACAAATCATTCGAATGCCGATCAGGACGAGGACAAGCGCCGAGTAGAGGACAGTCATTGACACGAGGACGGAGCTATCCAAGATCGTGTGGACGCTCATTTAGAGGAAATTCAAGTTCACGACATACAACGTATCAACATGCTTCAGCAGCAGGCACAGAAAATAAAGAAATAGGTTTCATTGCTAGCGATATTATTGCTAATGTGGGTGAATGTGGTAACATAGAACTAATTATAGACTCAGGATGTACGGAGCATTTAATAAATGAAAAATATGAAAATTATATGACGGATATTACGTATTTAGATAAACATGTCAAAATATTCGTAGCTAACGGCCAATGTATTACAACTAGTAAAAGAGGTAAACTTAAAGTAAAATATCAAAATACTACGATTAATATTGATGCTCTAATTGTGAAAGATGTTTCATACAATTTATTATCAGTAAAAAAGATTGTCGAGGCAGGTTTTAACATAAACTTTAATAAATACAATGTTAAAATATTTAATAAAAAGACATTTTTACGCGGCATCGTGCAAGGAAAGTTGTATAAGCTACAAGCCGAATTATGTAAGTCCGAAGTCTGTAATATTACTGATGCGACAGATCTATGGCACAAACGTTTAGGTCACTTAAATAGGAAAAGCCTTAATATACTAAACTTACCTGTATCTAATAGAATTTGCAGTCCTTGTATGGAGGGCAAAGCCACCCGAAGCCCGTTCACGCCTATCCCAAAGCCTAGAACAAAAATGACAGCCGAGATGCTTCACACAGACATAGCAGGACCGATCAGACATCAAGGACCTAATGGTGAAAAATATTTTATGAAAATTATTGACGATTTCTCTCATTTTTGCGTAGTGTATCCCCTGAAGAGCAAATCTGAAGCAACAGAACGACTGATGAACTATGTATTAAGAATTGAAAACGAAACGGGGAATAAAGTTAAAAGAATTAGATGCGATAATGGTGGAGAGTACACTGCTAACAGTTTGAAACTTTTTTGCATAAATAGAGGTATTAGTTTAGAATACACATTACCGTACACGCCACAACTTAATGGCATATCAGAACGAATGAACCGCACATTATGCGACAAAACGAGGACTCTATTAGCGGAAACCAATTTGCCAAAACATCTGTGGTGCGAAGCAATACAATGTGCAGTTTACCAATTAAACAGATCGCCATCATGGGCCATAAGCTTCAAGACACCCAGCGGAATATTTTTTGGTAAAAACGACATATCGAGATTGAGAGTATTTGGTTCCAAAGCTTGGGCTACTATAGTACCCAAACCGGACAAGTTTGCCAAGAGAGCAAAAGAAACAAGAATGGTAGGTTATGGAACTGTTGGTTACAGATTATGGGATCCAGAAGAAGATAAAATAGTTATTTCCAGAGATGTAAGATTTGATGAAAGCGACATTAAATTCAAAAACAAAGAAGAAGTGAAACAAGTTAGATATATTCAAGACAAAGAAGAAGAAATCAATAAAGAAAAGCAAGATATTGTAGAACAGGAAGATGAATTTAAAGATGCAGAAATGAACACTGATCAAATTGAAGAAGCAATAATCAGACCCAAAAGAACGATAAATCCTCCTGCTTATCTTAAAGATTACGAGACGAATATAGAAAACATAAATGAAACTAATATTGTTATATGTCTGAGTGCAAATGCACCAGAAACTTTCGAAGAAGCTATAAAAGAACCAGAATGGAAAAACGCAATCAATAAAGAACTAGATGCACTCCAAAGACTAGAAACGTGGGAAGAACAAGAAATAACCGATGGAAGAAAGCTCATTGATACAAAATGGATATTTAAACTAAAAGAAGATGGAACAAAAAAGGCAAGACTGGTAGCTAGAGGCTTCCAACAAAAGAAAAAAGATATTTTTGACAGCGTTTATGCACCCGTTGCTAGACATTCTACCATAAGAATGATCTTATCAAAAGCTGTACAAGATGATTTAAAGATTATTCAACTAGACATTCCCACTGCATTCCTAAATGGAAAATTGAAGTCTGATGTATTTATCAAAATACCCCAAGGATTAGAAATAAAAAATAATAATACAGCATTAAAACTAAAGAGAGCATTATATGGATTGATTGAATCACCAAAATGTTGGAATGAAACACTTGACGAATTTGCGAAAGCTAACGGATTCCAAAGATCAGAATATGATTACTGTTTGTATTACAAAGAAGATTGCTGGATGCTGATTTACGTGGACGATACCTAA

Protein

MCYDDESNLQQFFLKFEGILSELAAINVSVEVEDQICYLLSSLPKIYDQLITSIETMGSEKQLNIEFVKARLLDMETKLKMDRNSEGYENNAFITCHSCGKRGHKSFECRSGRGQAPSRGQSLTRGRSYPRSCGRSFRGNSSSRHTTYQHASAAGTENKEIGFIASDIIANVGECGNIELIIDSGCTEHLINEKYENYMTDITYLDKHVKIFVANGQCITTSKRGKLKVKYQNTTINIDALIVKDVSYNLLSVKKIVEAGFNINFNKYNVKIFNKKTFLRGIVQGKLYKLQAELCKSEVCNITDATDLWHKRLGHLNRKSLNILNLPVSNRICSPCMEGKATRSPFTPIPKPRTKMTAEMLHTDIAGPIRHQGPNGEKYFMKIIDDFSHFCVVYPLKSKSEATERLMNYVLRIENETGNKVKRIRCDNGGEYTANSLKLFCINRGISLEYTLPYTPQLNGISERMNRTLCDKTRTLLAETNLPKHLWCEAIQCAVYQLNRSPSWAISFKTPSGIFFGKNDISRLRVFGSKAWATIVPKPDKFAKRAKETRMVGYGTVGYRLWDPEEDKIVISRDVRFDESDIKFKNKEEVKQVRYIQDKEEEINKEKQDIVEQEDEFKDAEMNTDQIEEAIIRPKRTINPPAYLKDYETNIENINETNIVICLSANAPETFEEAIKEPEWKNAINKELDALQRLETWEEQEITDGRKLIDTKWIFKLKEDGTKKARLVARGFQQKKKDIFDSVYAPVARHSTIRMILSKAVQDDLKIIQLDIPTAFLNGKLKSDVFIKIPQGLEIKNNNTALKLKRALYGLIESPKCWNETLDEFAKANGFQRSEYDYCLYYKEDCWMLIYVDDT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

O96968   A0A146L6N5   A0A0A9XG27   A0A0A9Z0I6   A0A146KTS1   A0A1B6DFK3   + More
A0A0A9WLY1   A0A0A9WQU6   A0A0A9YQT1   A0A0A9ZBW6   A0A146LV28   A0A1Y1L115   A0A1Y1M4K4   A0A0T6AT79   A0A1Y1MQF0   A0A0J7K6U3   A0A1Y1MP14   A0A0A9WQA3   A0A182GA29   A0A023F102   A0A0J7KI47   A0A1W7R6C3   A0A1Y1JXU0   A0A2S2PNK0   J9KJ72   A0A0A9ZCB8   A0A182H4X3   A0A182GSW5   A0A1W7R6I5   A0A182GGE6   A0A224XA26   A0A087SVE4   A0A1X7U495   A0A182G1G7   A0A1B6F1U1   A0A0J7N374   A0A0J7K689   A0A2R6RYD4   A0A1Y1MJE9   A0A1W7R685   A0A034VP82   A0A151RCT9   A0A151THM1   A0A1B6FK59   A0A151R6U8   P10978   A0A0P6ITU5   A0A034W404   A0A1B6C2D3   Q967L5   B8YLY7   B8YLY5   H6U1F0   A0A251V331   A0A151R2G6   A0A2P6SP23   A0A151TKT1   A0A2N9IWX1   A0A1Y1LCN3   H6U1E9   A0A151SDY6   A0A151RJN4   B8YLY4   A0A0J7K6W1   A0A2N9EYI8   A0A151QNH6   Q9ZRJ0   A0A151RAL1   A0A2N9I6N4   A0A2N9GYW9   A0A2N9ETC8   A0A2N9EM80   A0A2N9H4V1   A0A151S6I6   A0A2R6QHR4   A0A151RYL1   A0A151QZS0   A0A2K3MYT4   A0A2N9ETM3   A0A2N9FMR2   A0A2N9GLP2   A0A0V0RWJ3   A0A2N9FSJ8   A0A2N9H171   A0A1W7R6A3   A0A068B703   B8YLY6   B8YLY3   A0A182GZN1   A0A151T469   A0A151QNH5   Q9AU17   A0A2N9GHK3   A0A2K3N1R3   W8BYI7   A0A2N9GY85   A0A182GFZ6   A0A151T355   A0A151TMN9  

Pubmed

10333565    26823975    25401762    28004739    26483478    25474469    + More
29661190    25348373    22057054    2536143    26999592    11319273    19656907    22427337    28538728    8624443    24500806    28382043    16040666    24495485   

EMBL

AB014676    BAA74713.1    GDHC01015802    JAQ02827.1    GBHO01027564    JAG16040.1    + More
GBHO01004832    JAG38772.1    GDHC01019310    JAP99318.1    GEDC01012841    GEDC01000503    JAS24457.1    JAS36795.1    GBHO01035173    JAG08431.1    GBHO01034731    JAG08873.1    GBHO01009623    JAG33981.1    GBHO01002761    JAG40843.1    GDHC01007058    JAQ11571.1    GEZM01072005    JAV65635.1    GEZM01042286    JAV79968.1    LJIG01022881    KRT78250.1    GEZM01028916    JAV86196.1    LBMM01012492    KMQ86193.1    JAV86195.1    GBHO01034936    JAG08668.1    JXUM01155348    KQ572178    KXJ68066.1    GBBI01004033    JAC14679.1    LBMM01007046    KMQ90088.1    GEHC01000928    JAV46717.1    GEZM01098220    JAV53943.1    GGMR01018348    MBY30967.1    ABLF02041793    GBHO01002616    JAG40988.1    JXUM01025857    KQ560736    KXJ81076.1    JXUM01085595    KQ563513    KXJ73717.1    GEHC01000878    JAV46767.1    JXUM01011189    KQ560325    KXJ83029.1    GFTR01008662    JAW07764.1    KK112142    KFM56833.1    JXUM01136904    KQ568499    KXJ68982.1    GECZ01025604    JAS44165.1    LBMM01010924    KMQ87150.1    LBMM01012772    KMQ86003.1    NKQK01000002    PSS35035.1    GEZM01032204    JAV84770.1    GEHC01000966    JAV46679.1    GAKP01015342    JAC43610.1    KQ483843    KYP40337.1    CM003608    KYP66486.1    GECZ01019212    JAS50557.1    KQ484038    KYP38095.1    X13777    GDUN01000694    JAN95225.1    GAKP01010102    JAC48850.1    GEDC01029908    JAS07390.1    AY009101    AAK12626.1    FJ544857    ACL97387.1    FJ544854    ACL97385.1    JN402333    AFB73912.1    CM007893    OTG30017.1    KQ484186    KYP36645.1    PDCK01000039    PRQ60431.1    CM003607    KYP67664.1    OIVN01006239    SPD28653.1    GEZM01063091    JAV69316.1    JN402332    AFB73911.1    KQ483417    KYP53032.1    KQ483702    KYP42748.1    FJ544853    ACL97384.1    LBMM01012645    KMQ86082.1    OIVN01000404    SPC79669.1    KQ485623    KYP31853.1    D83003    BAA11674.1    KQ483890    KYP39660.1    OIVN01004879    SPD19723.1    OIVN01002564    SPD04723.1    OIVN01000557    SPC82046.1    OIVN01000189    SPC75922.1    OIVN01002854    SPD06945.1    KQ483456    KYP50361.1    NKQK01000016    PSS08126.1    KQ483522    KYP47640.1    KQ484324    KYP35753.1    ASHM01014005    PNX95963.1    OIVN01000313    SPC78143.1    OIVN01000991    OIVN01001835    SPC88370.1    SPC98114.1    OIVN01002055    SPD00174.1    JYDL01000068    KRX18751.1    OIVN01001130    SPC90232.1    OIVN01002656    SPD05381.1    GEHC01000959    JAV46686.1    KF740825    AIC77183.1    FJ544856    ACL97386.1    FJ544851    ACL97383.1    JXUM01099923    KQ564528    KXJ72133.1    CM003610    KYP61818.1    KYP63036.1    KQ485638    KYP31826.1    AF279585    AAK29467.1    OIVN01002247    SPD01987.1    ASHM01015075    PNX96991.1    GAMC01008189    JAB98366.1    OIVN01002516    SPD04274.1    JXUM01060983    KQ562129    KXJ76624.1    KYP61490.1    CM003606    KYP68287.1   

Proteomes

UP000036403    UP000069940    UP000249989    UP000007819    UP000054359    UP000007879    + More
UP000241394    UP000075243    UP000084051    UP000215914    UP000238479    UP000236291    UP000054630   

PRIDE

O96968   

Pfam

PF00665   rve        + More
PF07727   RVT_2
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF13961   DUF4219
PF13358   DDE_3
PF16495   SWIRM-assoc_1
PF08534   Redoxin
PF00106   adh_short

Interpro

IPR036397   RNaseH_sf        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR038717   Tc1-like_DDE_dom       
IPR032451   SMARCC_C       
IPR036291   NAD(P)-bd_dom_sf       
IPR013740   Redoxin       
IPR020904   Sc_DH/Rdtase_CS       
IPR002347   SDR_fam       
IPR036249   Thioredoxin-like_sf       
IPR037944   PRX5-like       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF51735   SSF51735       
SSF52833   SSF52833       

Gene 3D

3.30.420.10     2.40.70.10    

CDD

cd03013  PRX5_like

ProteinModelPortal

O96968   A0A146L6N5   A0A0A9XG27   A0A0A9Z0I6   A0A146KTS1   A0A1B6DFK3   + More
A0A0A9WLY1   A0A0A9WQU6   A0A0A9YQT1   A0A0A9ZBW6   A0A146LV28   A0A1Y1L115   A0A1Y1M4K4   A0A0T6AT79   A0A1Y1MQF0   A0A0J7K6U3   A0A1Y1MP14   A0A0A9WQA3   A0A182GA29   A0A023F102   A0A0J7KI47   A0A1W7R6C3   A0A1Y1JXU0   A0A2S2PNK0   J9KJ72   A0A0A9ZCB8   A0A182H4X3   A0A182GSW5   A0A1W7R6I5   A0A182GGE6   A0A224XA26   A0A087SVE4   A0A1X7U495   A0A182G1G7   A0A1B6F1U1   A0A0J7N374   A0A0J7K689   A0A2R6RYD4   A0A1Y1MJE9   A0A1W7R685   A0A034VP82   A0A151RCT9   A0A151THM1   A0A1B6FK59   A0A151R6U8   P10978   A0A0P6ITU5   A0A034W404   A0A1B6C2D3   Q967L5   B8YLY7   B8YLY5   H6U1F0   A0A251V331   A0A151R2G6   A0A2P6SP23   A0A151TKT1   A0A2N9IWX1   A0A1Y1LCN3   H6U1E9   A0A151SDY6   A0A151RJN4   B8YLY4   A0A0J7K6W1   A0A2N9EYI8   A0A151QNH6   Q9ZRJ0   A0A151RAL1   A0A2N9I6N4   A0A2N9GYW9   A0A2N9ETC8   A0A2N9EM80   A0A2N9H4V1   A0A151S6I6   A0A2R6QHR4   A0A151RYL1   A0A151QZS0   A0A2K3MYT4   A0A2N9ETM3   A0A2N9FMR2   A0A2N9GLP2   A0A0V0RWJ3   A0A2N9FSJ8   A0A2N9H171   A0A1W7R6A3   A0A068B703   B8YLY6   B8YLY3   A0A182GZN1   A0A151T469   A0A151QNH5   Q9AU17   A0A2N9GHK3   A0A2K3N1R3   W8BYI7   A0A2N9GY85   A0A182GFZ6   A0A151T355   A0A151TMN9  

PDB

3S3N     E-value=1.88339e-08,     Score=144

KEGG

NA   

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0004519   GO:0004491   GO:0003964   GO:0004190   GO:0016491   GO:0016021   GO:0016592   GO:0008233   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR11439  

Length:

855

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02533

Exp number, first 60 AAs:

0.02515

Total prob of N-in:

0.00137

outside

1  -  855

 

 

Pi

491.171727

Theta

196.709672

Tajima's D

4.792486

CLR

0.825076

CSRT

0.999950002499875

Interpretation

Uncertain