SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16197  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013965
Annotation
H+_transporting_ATP_synthase_gamma_subunit_[Bombyx_mori]
Full name
ATP synthase subunit gamma       + More
ATP synthase subunit gamma, mitochondrial      
Alternative Name
F-ATPase gamma subunit
Location in the cell
Mitochondrial   Reliability : 3.707
 

Sequence

CDS
ATGTTGGGACGCTTCGGACCGGGTGTCGGCACCCAAGTCGTGGCGGTGGTTTACCATCAGCCAAACAGGAATATGGCTACTTTGAAGGCCATTTCCATCCGTCTTAAATCTGTGAAAAATATCCAGAAAATCACACAGTCCATGAAGATGGTGTCAGCTGCTAAATACACCCGTGCTGAGCGTGACCTGAAAGCTGCTCGTCCCTATGGTGAAGGTGCAGTACAGTTCTATGAAAGGGCTGAGGTTACACCTCCCGAAGATGACCCCAAGCAATTGTTTGTTGCTATGACCTCTGACAGAGGTTTGTGCGGAGCTGTACACACTGGTGTATCCAAAGTGATCCGCAACCGTCTCAGCGAACCTGGTGCTGAGAACATCAAGGTGATCTGTGTGGGAGATAAATCTCGCGGTATCCTGCAGAGATTGTACGGAAAGCACATCATTAGTGTTGCTAATGAGATCGGACGTCTCCCACCTACTTTCTTGGACGCAAGTCAGCTGGCCACTGCTATCCTCACCTCGGGATACGAGTTTGGTTCCGGAAAGATCATTTACAACAAGTTCAAGTCTGTGGTCTCGTACGCCCAGTCCGACTTGCCCCTCTACACTAAGAAGTCTATTGAGAGCGCCAGCAAGCTGACTGCGTACGACTCTCTGGACAGCGACGTGCTCCAATCCTACACGGAGTTCTCGCTGGCCTCGCTGTTGTTCTACGCGCTGAAGGAGGGCGCCTGCTCAGAGCAGTCGTCCCGCATGACCGCCATGGACAACGCCTCCAAGAACGCCGGCGAGATGATCGACAAGCTGACCCTCACGTTCAACAGGACCCGTCAAGCTGTCATCACCAGGGAGCTCATCGAGATCATCTCTGGTGCGGCCGCCTTGGACTAA
Protein
MLGRFGPGVGTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALD

Summary

Subunit
F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.
Similarity
Belongs to the ATPase gamma chain family.
Keywords
ATP synthesis   Complete proteome   Hydrogen ion transport   Ion transport   Membrane   Mitochondrion   Mitochondrion inner membrane   Reference proteome   Transit peptide   Transport  
Feature
chain  ATP synthase subunit gamma
EMBL
BABH01018421    DQ443278    ABF51367.1    GAIX01012289    JAA80271.1    AK401364    + More
KQ459583    BAM17986.1    KPI98617.1    AGBW02009877    OWR49666.1    KQ461103    KPJ09474.1    ODYU01007571    SOQ50453.1    RSAL01000091    RVE47997.1    NWSH01002112    PCG69139.1    KZ150244    PZC71889.1    MG846921    AXY94773.1    JF777422    AEU11767.1    NEVH01022362    PNF18917.1    KK852622    KDR19994.1    PYGN01000201    PSN51362.1    DS231829    EDS30322.1    ATLV01023800    KE525346    KFB49605.1    AXCN02000699    AXCM01002571    APCN01002493    CH477537    EAT39355.1    ADMH02000571    ETN65841.1    GGFJ01007886    MBW57027.1    GGFK01001696    MBW35017.1    AAAB01008964    EAA12854.3    GGFJ01007887    MBW57028.1    JXUM01116988    GAPW01002938    KQ566040    JAC10660.1    KXJ70434.1    GGFM01000831    MBW21582.1    GAMD01003014    JAA98576.1    GANO01002578    JAB57293.1    GFDL01008377    JAV26668.1    KQ971354    EFA07448.1    CH902623    EDV30574.1    GEZM01050230    GEZM01050229    JAV75666.1    CP012526    ALC48060.1    JRES01001003    KNC26199.1    EZ114869    ACU30922.1    CH479179    EDW23816.1    CM000070    EAL27311.1    AE014297    AY113454    Y12701    APGK01025935    BT126629    KB740605    KB632095    AEE61592.1    ENN80061.1    ERL88735.1    NNAY01001960    OXU22447.1    GAMC01010884    JAB95671.1    GANO01002937    JAB56934.1    AAZX01000987    GALX01002540    JAB65926.1    CM000364    EDX14890.1    CM000160    EDW98257.1    CH480819    EDW53399.1    CH954182    EDV53187.1    OUUW01000007    SPP82914.1    GDHF01012143    JAI40171.1    GAKP01006469    JAC52483.1    GBYB01006053    JAG75820.1    KK107085    QOIP01000008    EZA60056.1    RLU19527.1    DS235124    EEB12241.1    GBXI01015931    JAC98360.1    KA647354    AFP61983.1    GFDF01001781    JAV12303.1    GEDC01031639    JAS05659.1    GFDG01001618    JAV17181.1    CH964232    EDW81176.1    GDJX01002097    JAT65839.1    GDHF01031075    JAI21239.1    CH940652    EDW59008.1    KQ983039    KYQ47922.1    GL763908    EFZ19110.1    ACPB03017427    GFTR01004628    JAW11798.1    GECL01003595    JAP02529.1    GDKW01000647    JAI55948.1    GAHY01001359    JAA76151.1    GBGD01002379    JAC86510.1    DQ445536    ABD98774.1    KK855861    PTY24152.1    AY588070    AAT01082.1    ADTU01025481    AK417185    BAN20400.1    KQ978957    KYN27000.1    CH916377    EDV90789.1    KQ976488    KYM83613.1    GL888128    EGI66817.1    KQ434889    KZC10395.1    LBMM01003366    KMQ93607.1   
Pfam
PF00231   ATP-synt        + More
PF00467   KOW
PF17136   ribosomal_L24
Interpro
IPR000131   ATP_synth_F1_gsu        + More
IPR023632   ATP_synth_F1_gsu_CS       
IPR035968   ATP_synth_F1_ATPase_gsu       
IPR003256   Ribosomal_L24       
IPR014722   Rib_L2_dom2       
IPR041988   KOW_RPL26/RPL24       
IPR008991   Translation_prot_SH3-like_sf       
IPR005825   Ribosomal_L24/26_CS       
IPR005824   KOW       
SUPFAM
SSF52943   SSF52943        + More
SSF50104   SSF50104       
Gene 3D
PDB
2W6J     E-value=2.9351e-86,     Score=810

Ontologies

Topology

Subcellular location
Mitochondrion  
Mitochondrion inner membrane  
Length:
296
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02179
Exp number, first 60 AAs:
0.0066
Total prob of N-in:
0.00296
outside
1  -  296
 
 

Population Genetic Test Statistics

Pi
166.748796
Theta
135.371392
Tajima's D
0.877914
CLR
0.577228
CSRT
0.627418629068547
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26822097 VICVGDK 95.24 2e-08
26280517 AEMIVDAFNQMQGFK 95.24 2e-08
27102218 AARPYGEGAVQFYER 95.24 2e-08
28467696 AEVTPPEDDPK 95.24 2e-08
28556443 LTLTFNR 100.00 3e-05
26822097 HIISVANEIGR 100.00 2e-04
26280517 YGFPFIVR 100.00 2e-04
27102218 NAGEMIDKITITFNR 100.00 2e-04
28467696 AAQTMFWTEIAR 100.00 2e-04
28556443 SVVSYAQSDLPLYTK 100.00 0.001
28556443 SVVSYAQSDLPLYTK 100.00 0.001
28556443 QLFVAMTSDR 100.00 0.001
28556443 HIISVANEIGR 100.00 0.001
26822097 ITITFNR 100.00 0.004
26280517 PWQGIIGHNDVIAK 100.00 0.004
28467696 PYFKPTPFPGAR 100.00 0.004
28556443 LSEPGAENIK 100.00 0.004
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