Gene

KWMTBOMO16195  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013923

Annotation

PREDICTED:_probable_39S_ribosomal_protein_L24?_mitochondrial_[Papilio_polytes]

Location

Bomo_Chr28(-):1118477-1120706      View in EpiBrowser

Full name

Probable 39S ribosomal protein L24, mitochondrial      

Location in the cell

Cytoplasmic   Reliability : 1.753 Mitochondrial   Reliability : 2.256

CDS

ATGCGAATATACGGTTATTTAGCAAAAAAAGTCGGGGATTTGACCATAAAATATTCCAATTTTCCCGAATCCTATGTCAAAAAAAGCTATGAACAGGTTTACTGGAAGACTCCCGCTGGGTATCCTCAGTACAAGAAAGCTCAGGTTGCTCGTAAGAAGTACCGGTTCACAACAAACAGACCCTGGACCGGTCAATTTCGGCAACAGAATGAACCTGGCACATTAAGGAAGAAGGTCTTCCTCGAACCGATTCGTGATTGGACATTTTTCAGAGGTGATCGCGTGGAAGTTATGGTAGGAAAAGACAAAGGTAAACAAGGGATTGTATCCCAAGTCATACAGGAGCGTAACTGGGTTATTGTCGAAGGTCTTAATACACATCTTAGGGTTGTTGGAAAAGATAAAAACTTCCCAGGAATAACAATTCAGTCTGAAGCTCCGCTATTGGTAACCAGTGATGTGAAATTGGTTGACCCAGAGTCCTTGAAGGCTACTGATGTAGAATGGAGATACACTGAAGAAGGAGATAAGGTACGAGTGTCATTGGCCAGCAGTCGAATCATACCCATTCCTAAAACAGCCGAAGAAACAATTGATTACAAGAGTAAAGAGTTGTACATTGATAATATTGAAAAGGACACCACTGCAGATGCTGCTACTAAGATAACTTTTGCGCCAAAACTCAGGACCTTTGAAATGGACATTATGGAAGAAATGGGTATAAAAGAGGATAGGGTTCCCGCCAAAAGTTACTGGTATTAA

Protein

MRIYGYLAKKVGDLTIKYSNFPESYVKKSYEQVYWKTPAGYPQYKKAQVARKKYRFTTNRPWTGQFRQQNEPGTLRKKVFLEPIRDWTFFRGDRVEVMVGKDKGKQGIVSQVIQERNWVIVEGLNTHLRVVGKDKNFPGITIQSEAPLLVTSDVKLVDPESLKATDVEWRYTEEGDKVRVSLASSRIIPIPKTAEETIDYKSKELYIDNIEKDTTADAATKITFAPKLRTFEMDIMEEMGIKEDRVPAKSYWY

Subunit

Component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.

Similarity

Belongs to the universal ribosomal protein uL24 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein   Transit peptide  

Feature

chain  Probable 39S ribosomal protein L24, mitochondrial

Uniprot

H9JWK9   A0A2H1WJ43   A0A2A4JAF6   A0A194Q5E3   A0A212F7H5   A0A194QVY4   + More
A0A3S2NBL1   A0A0K8TRN0   A0A0L7LVA6   A0A182W6D9   W5JCE4   A0A182M2K0   A0A182TCI0   A0A182L0H3   A0A182UIS7   Q7Q4H8   A0A182IC46   A0A2M3ZBZ0   A0A2M4AR15   A0A2M4BXJ4   A0A182XFW2   A0A182UU33   A0A084WH48   A0A182YDS7   A0A182F3H6   A0A182RDT3   A0A182NU15   A0A023EMD3   A0A182QDL8   A0A182JJM6   A0A1S4FW00   A0A182PLT2   A0A182K8A8   Q16ML4   B0VZY0   A0A1Q3FEY1   A0A1L8DRU0   A0A1B0DDW2   A0A1J1HV99   A0A2W1BFA9   A0A067RCT1   A0A2P8Y3K6   A0A336MLY7   A0A034WBU6   W8BVA3   A0A1W4XLB8   B4KKL0   B4LS58   U5EWJ8   A0A3B0JAX6   B3N4B9   B4NWA6   A0A1W4UI61   A0A1L8ED55   B4JPV7   B4N0I6   Q9VMY1   A0A0J9QVV8   A0A0T6ATD2   A0A0L0C700   Q29MA5   V5G9F9   A0A1S4GY64   A0A2A4J985   A0A1I8MFY7   A0A0M4E9Y6   B4I186   A0A0K8U8V8   A0A0A1WEX6   R4WDJ8   A0A0V0G786   A0A023F9I9   A0A0N7Z9J9   R4G8P3   A0A1B0AJQ5   D3TQK6   J3JX16   A0A1A9YJ29   A0A1A9UPJ8   E2ARU7   T1H599   D6WQL4   A0A1D2N6X4   A0A151XJ42   A0A151IRW3   A0A151I5F3   A0A026VYV5   B3MVK3   A0A158NXX3   A0A1A9WKN2   A0A1I8PXL6   A0A2H8TFQ8   A0A151JYS3   A0A0K8UYZ3   A0A1Y1L6P6   A0A1B6MS84   A0A224XWM3   A0A2R7WTN8   E2BZG9   A0A0A9XLS4  

Pubmed

19121390    26354079    22118469    26369729    26227816    20920257    + More
23761445    20966253    12364791    14747013    17210077    24438588    25244985    24945155    26483478    17510324    28756777    24845553    29403074    25348373    24495485    17994087    17550304    10731132    12537572    12537569    22936249    26108605    15632085    25315136    25830018    23691247    25474469    27129103    20353571    22516182    23537049    20798317    18362917    19820115    27289101    24508170    30249741    21347285    28004739    25401762   

EMBL

BABH01018420    ODYU01008986    SOQ53047.1    NWSH01002385    PCG68420.1    KQ459583    + More
KPI98615.1    AGBW02009877    OWR49668.1    KQ461103    KPJ09474.1    RSAL01000269    RVE43193.1    GDAI01000586    JAI17017.1    JTDY01000057    KOB79126.1    ADMH02001920    ETN60499.1    AXCM01001333    AAAB01008964    EAA12224.2    APCN01000775    GGFM01005278    MBW26029.1    GGFK01009841    MBW43162.1    GGFJ01008638    MBW57779.1    ATLV01023789    KE525346    KFB49542.1    JXUM01064009    GAPW01003608    KQ562278    JAC09990.1    KXJ76249.1    AXCN02000809    AXCP01007834    CH477858    EAT35576.1    DS231816    DS232267    EDS37552.1    EDS38786.1    GFDL01008939    JAV26106.1    GFDF01004888    JAV09196.1    AJVK01005465    CVRI01000021    CRK92000.1    KZ150244    PZC71887.1    KK852722    KDR17736.1    PYGN01000972    PSN38819.1    UFQT01001286    UFQT01005118    SSX29843.1    SSX35907.1    GAKP01006793    JAC52159.1    GAMC01003443    JAC03113.1    CH933807    EDW12674.1    CH940649    EDW64744.1    GANO01000536    JAB59335.1    OUUW01000004    SPP79155.1    CH954177    EDV57789.1    CM000157    EDW88423.1    GFDG01002129    JAV16670.1    CH916372    EDV98937.1    CH963920    EDW77599.1    AE014134    AY095024    CM002910    KMY88173.1    LJIG01022868    KRT78314.1    JRES01000827    KNC28016.1    CH379060    GALX01001691    JAB66775.1    PCG68419.1    CP012523    ALC40052.1    CH480820    EDW54293.1    GDHF01029220    JAI23094.1    GBXI01016850    JAC97441.1    AK417763    BAN20978.1    GECL01002925    JAP03199.1    GBBI01001129    JAC17583.1    GDKW01000339    JAI56256.1    ACPB03001111    GAHY01000622    JAA76888.1    CCAG010017358    EZ423708    ADD19984.1    APGK01045460    BT127784    KB741037    KB631710    AEE62746.1    ENN74587.1    ERL85541.1    GL442170    EFN63865.1    CAQQ02043918    KQ971354    EFA06988.1    LJIJ01000190    ODN00716.1    KQ982074    KYQ60436.1    KQ981112    KYN09417.1    KQ976425    KYM88092.1    KK107558    QOIP01000012    EZA48957.1    RLU16097.1    CH902624    EDV33268.1    ADTU01000034    GFXV01000747    MBW12552.1    KQ981463    KYN41527.1    GDHF01020503    JAI31811.1    GEZM01065401    JAV68481.1    GEBQ01001224    JAT38753.1    GFTR01004007    JAW12419.1    KK855515    PTY22923.1    GL451627    EFN78867.1    GBHO01025544    GBHO01025539    JAG18060.1    JAG18065.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000283053    + More
UP000037510    UP000075920    UP000000673    UP000075883    UP000075901    UP000075882    UP000075902    UP000007062    UP000075840    UP000076407    UP000075903    UP000030765    UP000076408    UP000069272    UP000075900    UP000075884    UP000069940    UP000249989    UP000075886    UP000075880    UP000075885    UP000075881    UP000008820    UP000002320    UP000092462    UP000183832    UP000027135    UP000245037    UP000192223    UP000009192    UP000008792    UP000268350    UP000008711    UP000002282    UP000192221    UP000001070    UP000007798    UP000000803    UP000037069    UP000001819    UP000095301    UP000092553    UP000001292    UP000015103    UP000092445    UP000092444    UP000019118    UP000030742    UP000092443    UP000078200    UP000000311    UP000015102    UP000007266    UP000094527    UP000075809    UP000078492    UP000078540    UP000053097    UP000279307    UP000007801    UP000005205    UP000091820    UP000095300    UP000078541    UP000008237   

PRIDE

H9JWK9    Q9VMY1   

Pfam

PF17136   ribosomal_L24        + More
PF00467   KOW
PF00231   ATP-synt
PF00432   Prenyltrans

Interpro

IPR005825   Ribosomal_L24/26_CS        + More
IPR005824   KOW       
IPR008991   Translation_prot_SH3-like_sf       
IPR041988   KOW_RPL26/RPL24       
IPR003256   Ribosomal_L24       
IPR014722   Rib_L2_dom2       
IPR035968   ATP_synth_F1_ATPase_gsu       
IPR023632   ATP_synth_F1_gsu_CS       
IPR000131   ATP_synth_F1_gsu       
IPR001330   PFTB_repeat       
IPR008930   Terpenoid_cyclase/PrenylTrfase       

SUPFAM

SSF50104   SSF50104        + More
SSF52943   SSF52943       
SSF48239   SSF48239       

Gene 3D

2.30.30.30    

CDD

cd06089  KOW_RPL26
cd12151  F1-ATPase_gamma

ProteinModelPortal

H9JWK9   A0A2H1WJ43   A0A2A4JAF6   A0A194Q5E3   A0A212F7H5   A0A194QVY4   + More
A0A3S2NBL1   A0A0K8TRN0   A0A0L7LVA6   A0A182W6D9   W5JCE4   A0A182M2K0   A0A182TCI0   A0A182L0H3   A0A182UIS7   Q7Q4H8   A0A182IC46   A0A2M3ZBZ0   A0A2M4AR15   A0A2M4BXJ4   A0A182XFW2   A0A182UU33   A0A084WH48   A0A182YDS7   A0A182F3H6   A0A182RDT3   A0A182NU15   A0A023EMD3   A0A182QDL8   A0A182JJM6   A0A1S4FW00   A0A182PLT2   A0A182K8A8   Q16ML4   B0VZY0   A0A1Q3FEY1   A0A1L8DRU0   A0A1B0DDW2   A0A1J1HV99   A0A2W1BFA9   A0A067RCT1   A0A2P8Y3K6   A0A336MLY7   A0A034WBU6   W8BVA3   A0A1W4XLB8   B4KKL0   B4LS58   U5EWJ8   A0A3B0JAX6   B3N4B9   B4NWA6   A0A1W4UI61   A0A1L8ED55   B4JPV7   B4N0I6   Q9VMY1   A0A0J9QVV8   A0A0T6ATD2   A0A0L0C700   Q29MA5   V5G9F9   A0A1S4GY64   A0A2A4J985   A0A1I8MFY7   A0A0M4E9Y6   B4I186   A0A0K8U8V8   A0A0A1WEX6   R4WDJ8   A0A0V0G786   A0A023F9I9   A0A0N7Z9J9   R4G8P3   A0A1B0AJQ5   D3TQK6   J3JX16   A0A1A9YJ29   A0A1A9UPJ8   E2ARU7   T1H599   D6WQL4   A0A1D2N6X4   A0A151XJ42   A0A151IRW3   A0A151I5F3   A0A026VYV5   B3MVK3   A0A158NXX3   A0A1A9WKN2   A0A1I8PXL6   A0A2H8TFQ8   A0A151JYS3   A0A0K8UYZ3   A0A1Y1L6P6   A0A1B6MS84   A0A224XWM3   A0A2R7WTN8   E2BZG9   A0A0A9XLS4  

PDB

6GB2     E-value=1.40501e-42,     Score=433

KEGG

101743958    K02895 large subunit ribosomal protein L24 | (RefSeq) probable 39S ribosomal protein L24, mitochondr

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0005840   GO:0045261   GO:0015986   GO:0046933   GO:0005739   GO:0003824   GO:0032543   GO:0005762   GO:0005622   GO:0016791   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR12903   PTHR11693  

Subcellular location

Mitochondrion  

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13517

outside

1  -  253

 

 

Pi

213.03587

Theta

181.838167

Tajima's D

0.575148

CLR

0

CSRT

0.533123343832808

Interpretation

Uncertain