Gene

KWMTBOMO16178  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013933

Annotation

phytanoyl-CoA_dioxygenase_peroxisomal_precursor_[Bombyx_mori]

Location

Bomo_Chr28(-):607354-615886      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.826 Mitochondrial   Reliability : 1.51

CDS

ATGCCTTTAAAAGGTTTAAAAGTTCTACCTAATCCAGTGTTCTCAGAGCTGCCACAGAACTACAGATTGTCGGAGGAACAAAAATCATTCTATTGGGAGAATGGGTATCTAGTAATCAAGGAATTAATTGATTTCACTTCATTATATAGTTACAAACAGCGCTTTCTGCAAATATGCAAAGGAATAGTTGACAGCCCTGTTATGATTGTCAAAGAACAGGCACTTTTTGAGAAGAACTTAAAACCTGAAGAATACATTAATAAGCTCCAAGAAATCTTATATGATGATGTGTTCATGACCTATGGTGAACATCCCAGGCTATTGGATGTGATCTCGCAGTTTATTGGTGATGACATAACGGCTATTCACAGCATGTTCATCAACAAACCCCCAGGTACCGCCAGACATCCGCCGCACCAGGATTTATTTTATTTCCCGATCAGACCTGTGGATAAGATCATAGGCTCATGGACTGCCGTGGACCATGTCAATAAGGATAATGGCTGTCTGTATGTCATTCCAAAGTCTCATAAGCAAGATATTTTATACCCCCATGGTGATGTGCCGGAGGCCGGTAAACTGTACCACGGGATTTTGAACGAAGAGACGCTCGCCCCGGAGCACGCCCGTGTCTCTGTGGACATGGCCCCCGGGGACACCGTGCTGCTGCACCCGCGCCTGCTCCACGGCTCCGGACCCAACCGCACCCAGCGGCACCGGAAGGCGATCACGGTGCACTTCGCGAGCAGCGCGTGCGAGTACGTGGACGTGCGCGGCTCCGTGCAGGAGCGCCTCGCCGCCGACGTGCAGGCCGCCGCCACCCGCCGGGGACTCCGAGTCAGCTATCAGGACATCTGGAGATACAAAAGTAAACAAGTCAAAGGTGTGAGATCGAATTTACATCTTGTGAGCACGTAA

Protein

MPLKGLKVLPNPVFSELPQNYRLSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSPVMIVKEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMFINKPPGTARHPPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSHKQDILYPHGDVPEAGKLYHGILNEETLAPEHARVSVDMAPGDTVLLHPRLLHGSGPNRTQRHRKAITVHFASSACEYVDVRGSVQERLAADVQAAATRRGLRVSYQDIWRYKSKQVKGVRSNLHLVST

Uniprot

Q2F666   H9JWL9   A0A2A4K8H1   A0A2W1BA79   A0A212F550   A0A437B3H8   + More
A0A2A4K938   A0A194PZ39   A0A0N0PEX1   A0A212F559   A0A0T6B649   A0A0P6G8Y2   A0A2H1W8H7   D6WU68   E9GCQ8   J9JLW1   A0A2G8LDD3   A0A1B6CEL6   V4AEF1   A0A224XTP9   A0A2G8JMF5   A0A1S3J753   A0A0V0GB98   A0A131XYM9   A0A1D2N7A4   A0A131YX51   A0A224YP35   C3YPG8   A0A0N7ZGW6   A0A087US16   A0A1Z5L5P7   G3MQG7   A0A3M7PVD8   A0A3S3PQX4   A0A0P6ETA4   F6UP66   E0VKX4   B7PRD2   A0A0L7LUJ3   A0A2J7QZG9   A0A0P6FPU6   A0A023FKU5   A0A0B7AXV4   A0A0P4W8M6   A0A2S2QIW6   A0A0P5J4C9   A0A023F7W0   A0A0P5RAS9   A0A0P5H1H3   A0A131X6T5   H2YLK7   A0A0N8EAG1   A0A0P5PC60   A0A0P6CYS8   L7M8K7   A0A1V9X470   A0A3M7RY08   H2YLK8   A0A0P5PEI4   A0A0P5DXE1   A0A323TK71   J3JVT7   A0A147BTR0   A0A1B6LX57   A0A0P5H340   A0A0P5EWF4   A0A0P5GV61   A0A093HYS5   A0A0P5EYC7   A0A1Y1N1Z7   A0A146LRN9   A0A0N8C7P5   A0A0P5IEX5   A0A0A9WS03   N6UHU8   A0A067R877   A0A0P5ZHK5   A0A293N0G6   A0A0P5AWY7   A0A0P4YJ58   A0A0P4W0A9   R4G806   T1KPI6   A0A0P6BJZ5   A0A0P5DLH5   W5K8Y0   A0A226ETK9   E9H5Q7   A0A2S2NS93   W5UJP9   S4RVT9   A0A0L8GUG9   A0A2H2IEC8   A0A0L7QZ74   U3JGT0   A0A151WG10   A0A154PH64   A7S3H7   A0A3Q2DMJ9  

Pubmed

19121390    28756777    22118469    26354079    18362917    19820115    + More
21292972    29023486    23254933    27289101    26830274    28797301    18563158    28528879    22216098    30375419    12481130    15114417    20566863    26227816    25474469    28049606    25576852    28327890    22516182    29652888    28004739    26823975    25401762    23537049    24845553    27129103    25329095    23127152    17615350   

EMBL

DQ311206    ABD36151.1    BABH01018368    NWSH01000031    PCG80517.1    KZ150289    + More
PZC71591.1    AGBW02010243    OWR48865.1    RSAL01000177    RVE45010.1    PCG80516.1    KQ459583    KPI98597.1    KQ459764    KPJ20097.1    OWR48864.1    LJIG01009546    KRT82864.1    GDIQ01036891    JAN57846.1    ODYU01006894    SOQ49152.1    KQ971352    EFA06775.2    GL732539    EFX82600.1    ABLF02020325    MRZV01000118    PIK58264.1    GEDC01025420    JAS11878.1    KB202210    ESO91731.1    GFTR01005077    JAW11349.1    MRZV01001596    PIK36908.1    GECL01000869    JAP05255.1    GEFM01004009    JAP71787.1    LJIJ01000169    ODN01143.1    GEDV01005010    JAP83547.1    GFPF01004598    MAA15744.1    GG666538    EEN57752.1    GDIP01246609    JAI76792.1    KK121301    KFM80155.1    GFJQ02004452    JAW02518.1    JO844118    AEO35735.1    REGN01008804    RNA02638.1    NCKU01000788    NCKU01000780    NCKU01000641    RWS14159.1    RWS14188.1    RWS14709.1    GDIQ01071318    JAN23419.1    EAAA01002842    DS235255    EEB14030.1    ABJB010070454    ABJB010296797    ABJB010678291    ABJB010786527    ABJB010914646    DS772031    EEC09154.1    JTDY01000056    KOB79127.1    NEVH01009069    PNF33979.1    GDIQ01045981    JAN48756.1    GBBK01002857    JAC21625.1    HACG01038778    CEK85643.1    GDRN01064498    GDRN01064497    GDRN01064496    JAI64825.1    GGMS01008430    MBY77633.1    GDIQ01203365    JAK48360.1    GBBI01001377    JAC17335.1    GDIQ01105149    JAL46577.1    GDIQ01239311    JAK12414.1    GEFH01005137    JAP63444.1    GDIQ01045980    JAN48757.1    GDIQ01140196    JAL11530.1    GDIQ01087816    JAN06921.1    GACK01004659    JAA60375.1    MNPL01025422    OQR68287.1    REGN01002407    RNA28319.1    GDIQ01129748    JAL21978.1    GDIP01151202    JAJ72200.1    MDVM02000118    PYZ99275.1    BT127355    AEE62317.1    GEGO01001218    JAR94186.1    GEBQ01011744    JAT28233.1    GDIQ01233309    JAK18416.1    GDIQ01266129    GDIQ01240965    JAJ85595.1    GDIQ01239310    JAK12415.1    KL206610    KFV84152.1    GDIP01149961    GDIQ01266080    GDIQ01225913    JAJ73441.1    JAJ85644.1    GEZM01015026    JAV91922.1    GDHC01008155    JAQ10474.1    GDIQ01106699    JAL45027.1    GDIQ01214358    JAK37367.1    GBHO01034342    GBHO01034341    GBRD01015046    JAG09262.1    JAG09263.1    JAG50780.1    APGK01003620    APGK01025218    KB740577    KB735357    ENN80196.1    ENN83394.1    KK852817    KDR15754.1    GDIP01043421    JAM60294.1    GFWV01021161    MAA45889.1    GDIP01193396    JAJ30006.1    GDIP01229148    GDIP01194893    GDIP01073067    LRGB01000944    JAI94253.1    KZS14692.1    GDKW01000306    JAI56289.1    ACPB03014046    GAHY01001807    JAA75703.1    CAEY01000330    GDIP01013772    JAM89943.1    GDIP01157910    JAJ65492.1    LNIX01000002    OXA60942.1    GL732594    EFX73045.1    GGMR01007405    MBY20024.1    JT412581    AHH39907.1    KQ420350    KOF80552.1    KQ414685    KOC63856.1    AGTO01021238    KQ983203    KYQ46760.1    KQ434893    KZC10658.1    DS469573    EDO41772.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053268    UP000053240    + More
UP000007266    UP000000305    UP000007819    UP000230750    UP000030746    UP000085678    UP000094527    UP000001554    UP000054359    UP000276133    UP000285301    UP000008144    UP000009046    UP000001555    UP000037510    UP000235965    UP000007875    UP000192247    UP000247427    UP000053584    UP000019118    UP000027135    UP000076858    UP000015103    UP000015104    UP000018467    UP000198287    UP000221080    UP000245300    UP000053454    UP000005237    UP000053825    UP000016665    UP000075809    UP000076502    UP000001593    UP000265020   

PRIDE

Q2F666    H9JWL9   

Pfam

PF05721   PhyH

Interpro

IPR008775   Phytyl_CoA_dOase        + More
IPR005123   Oxoglu/Fe-dep_dioxygenase       

ProteinModelPortal

Q2F666   H9JWL9   A0A2A4K8H1   A0A2W1BA79   A0A212F550   A0A437B3H8   + More
A0A2A4K938   A0A194PZ39   A0A0N0PEX1   A0A212F559   A0A0T6B649   A0A0P6G8Y2   A0A2H1W8H7   D6WU68   E9GCQ8   J9JLW1   A0A2G8LDD3   A0A1B6CEL6   V4AEF1   A0A224XTP9   A0A2G8JMF5   A0A1S3J753   A0A0V0GB98   A0A131XYM9   A0A1D2N7A4   A0A131YX51   A0A224YP35   C3YPG8   A0A0N7ZGW6   A0A087US16   A0A1Z5L5P7   G3MQG7   A0A3M7PVD8   A0A3S3PQX4   A0A0P6ETA4   F6UP66   E0VKX4   B7PRD2   A0A0L7LUJ3   A0A2J7QZG9   A0A0P6FPU6   A0A023FKU5   A0A0B7AXV4   A0A0P4W8M6   A0A2S2QIW6   A0A0P5J4C9   A0A023F7W0   A0A0P5RAS9   A0A0P5H1H3   A0A131X6T5   H2YLK7   A0A0N8EAG1   A0A0P5PC60   A0A0P6CYS8   L7M8K7   A0A1V9X470   A0A3M7RY08   H2YLK8   A0A0P5PEI4   A0A0P5DXE1   A0A323TK71   J3JVT7   A0A147BTR0   A0A1B6LX57   A0A0P5H340   A0A0P5EWF4   A0A0P5GV61   A0A093HYS5   A0A0P5EYC7   A0A1Y1N1Z7   A0A146LRN9   A0A0N8C7P5   A0A0P5IEX5   A0A0A9WS03   N6UHU8   A0A067R877   A0A0P5ZHK5   A0A293N0G6   A0A0P5AWY7   A0A0P4YJ58   A0A0P4W0A9   R4G806   T1KPI6   A0A0P6BJZ5   A0A0P5DLH5   W5K8Y0   A0A226ETK9   E9H5Q7   A0A2S2NS93   W5UJP9   S4RVT9   A0A0L8GUG9   A0A2H2IEC8   A0A0L7QZ74   U3JGT0   A0A151WG10   A0A154PH64   A7S3H7   A0A3Q2DMJ9  

PDB

2A1X     E-value=9.64714e-57,     Score=556

KEGG

692832    K00477 phytanoyl-CoA hydroxylase [EC:1.14.11.18] | (RefSeq) phytanoyl-CoA dioxygenase peroxisomal pr

PATHWAY

04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0051213   GO:0048244   GO:0001561   GO:0048037   GO:0097089   GO:0006720   GO:0008198   GO:0005777   GO:0006103   GO:0031406  

Length:

305

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00212

Exp number, first 60 AAs:

0.00194

Total prob of N-in:

0.00333

outside

1  -  305

 

 

Pi

197.181195

Theta

37.744299

Tajima's D

2.801264

CLR

1.694932

CSRT

0.969101544922754

Interpretation

Uncertain