Gene

KWMTBOMO16165

Pre Gene Modal

BGIBMGA013948

Annotation

PREDICTED:_homeobox_protein_orthopedia_[Bombyx_mori]

Location

Bomo_Chr28(+):314716-322080      View in EpiBrowser

Full name

Homeobox protein orthopedia      

Location in the cell

Nuclear   Reliability : 3.269

CDS

ATGGTCTGGTTCCAGAACAGACGGGCGAAGTGGAAAAAGCGCAAGAAGAGCACCAATGTGTTTAGATCTCCAGGAGCGTTGCTTCCTTCACACGGCTTACCACCGTTCGGGGCTGGGGACGTCTGTGGACCTGGTGTCTTTGCAGACAGACCTTGGTCGATGCCCGCTGGTCTTGGGCAACTATCGCAGTCGGGAGTGTCTATGGGAGGTTTCGGTGCGGGCACCCTGCCGCAGCTCGCCGCGGACCTGAACCCCTCGCTCCCCATCAGCTCAGTGGCGTCGGGACAACCTTACCAGGGACACTATCCGCTGAACTCTTTAGGAGACACGATGATGTCCTACTGCAACAACATAGCGAGCGGACAACAGGCCTTGGAGGGCTCCCCCACCCCCCCGCACATGGGACACTGCGCCAACAACAACGCGTCGCCTGACGCTTCAGGTAAACTTGCCAGGATCAAGTCAATTCGCAACTTTTCACCGGTGGTAGGACCTTTTGTGAGTCCGCGCGGGTAG

Protein

MVWFQNRRAKWKKRKKSTNVFRSPGALLPSHGLPPFGAGDVCGPGVFADRPWSMPAGLGQLSQSGVSMGGFGAGTLPQLAADLNPSLPISSVASGQPYQGHYPLNSLGDTMMSYCNNIASGQQALEGSPTPPHMGHCANNNASPDASGKLARIKSIRNFSPVVGPFVSPRG

Description

May be involved in the development of the central nervous system.

Similarity

Belongs to the paired homeobox family.
Belongs to the paired homeobox family. Bicoid subfamily.

Keywords

Alternative splicing   Complete proteome   Developmental protein   DNA-binding   Homeobox   Nucleus   Reference proteome  

Feature

chain  Homeobox protein orthopedia
splice variant  In isoform C.

Uniprot

H9JWN4   A0A2A4K001   A0A2H1WU31   A0A2W1BMD9   A0A437B3I6   A0A212FHC3   + More
A0A0N0PEJ3   A0A194Q0R6   A0A1W4WKM7   A0A1W4WAK1   A0A1W4WLM0   A0A1W4WAH8   V5IA52   A0A2J7PF19   A0A0L7RBT3   A0A1D2N5S5   B3MIQ9   A0A0A1XRQ9   A0A1I8MBU0   B4NNJ8   A0A226EZT7   A0A182FCF0   B4J985   B4KQM5   A0A1I8PSX6   A0A1L8DDA5   W5JUX1   B4I7G0   A0A0J9U721   A0A0B4LFZ2   A0A0J9RHI9   A0A0B4LFU7   A0A0B4LH19   B4QFI5   P56672   A0A0J9RIP0   B3NK04   A0A3B0JER8   B4PA05   Q28ZR5   A0A1W4VHJ1   B4GGW2   A0A3B0IZY6   A0A182N895   A0A3B0JK11   A0A182RTL8   A0A182LBA4   A0A182HP95   A0A182WIJ4   A0A182MI15   A0A1S4EZJ8   A0A182X492   A0A182P6B1   A0A182VGE8   A0A0L0CFV8   A0A1A9VY58   A0A182JDG6   Q17KG1   A0A1A9XJ95   A0A1A9ZNN7   A0A1B0B220   A0A1B0FDS8   A0A1A9WMS6   A0A1J1IUX4   A0A154NX82   A0A336MRB6   A0A336MG30   A0A0C9R705   A0A182TDZ5   A0A0A1X6P7   A0A0A1XHT5  

Pubmed

19121390    28756777    22118469    26354079    27289101    17994087    + More
25830018    25315136    20920257    23761445    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    7913821    17550304    15632085    20966253    26108605    17510324   

EMBL

BABH01018342    BABH01018343    NWSH01000308    PCG77567.1    ODYU01011064    SOQ56563.1    + More
KZ149970    PZC76098.1    RSAL01000177    RVE45020.1    AGBW02008507    OWR53135.1    KQ459764    KPJ20109.1    KQ459583    KPI98584.1    GALX01001790    JAB66676.1    NEVH01026086    PNF14927.1    KQ414617    KOC68397.1    LJIJ01000197    ODN00604.1    CH902619    EDV35969.2    GBXI01000630    JAD13662.1    CH964282    EDW85937.2    LNIX01000001    OXA62401.1    CH916367    EDW02460.1    CH933808    EDW08194.2    GFDF01009652    JAV04432.1    ADMH02000391    ETN66745.1    CH480824    EDW56535.1    CM002911    KMY95360.1    AE013599    AHN56445.1    KMY95357.1    AHN56446.1    AHN56449.1    CM000362    EDX07977.1    KMY95353.1    BT023887    BT030422    KMY95359.1    CH954179    EDV55370.2    OUUW01000001    SPP73790.1    CM000158    EDW91336.2    CM000071    EAL25546.3    CH479183    EDW35732.1    SPP73787.1    SPP73789.1    APCN01002931    AXCM01004441    JRES01000440    KNC31130.1    CH477224    EAT47190.1    JXJN01007394    CCAG010007043    CVRI01000059    CRL03506.1    KQ434777    KZC04172.1    UFQT01002088    SSX32620.1    UFQS01000530    UFQT01000530    SSX04675.1    SSX25038.1    GBYB01008582    JAG78349.1    GBXI01007293    JAD06999.1    GBXI01004224    JAD10068.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    + More
UP000192223    UP000235965    UP000053825    UP000094527    UP000007801    UP000095301    UP000007798    UP000198287    UP000069272    UP000001070    UP000009192    UP000095300    UP000000673    UP000001292    UP000000803    UP000000304    UP000008711    UP000268350    UP000002282    UP000001819    UP000192221    UP000008744    UP000075884    UP000075900    UP000075882    UP000075840    UP000075920    UP000075883    UP000076407    UP000075885    UP000075903    UP000037069    UP000078200    UP000075880    UP000008820    UP000092443    UP000092445    UP000092460    UP000092444    UP000091820    UP000183832    UP000076502    UP000075902   

PRIDE

H9JWN4    P56672   

Pfam

PF00046   Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR000047   HTH_motif       
IPR009057   Homeobox-like_sf       
IPR003654   OAR_dom       
IPR017970   Homeobox_CS       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

H9JWN4   A0A2A4K001   A0A2H1WU31   A0A2W1BMD9   A0A437B3I6   A0A212FHC3   + More
A0A0N0PEJ3   A0A194Q0R6   A0A1W4WKM7   A0A1W4WAK1   A0A1W4WLM0   A0A1W4WAH8   V5IA52   A0A2J7PF19   A0A0L7RBT3   A0A1D2N5S5   B3MIQ9   A0A0A1XRQ9   A0A1I8MBU0   B4NNJ8   A0A226EZT7   A0A182FCF0   B4J985   B4KQM5   A0A1I8PSX6   A0A1L8DDA5   W5JUX1   B4I7G0   A0A0J9U721   A0A0B4LFZ2   A0A0J9RHI9   A0A0B4LFU7   A0A0B4LH19   B4QFI5   P56672   A0A0J9RIP0   B3NK04   A0A3B0JER8   B4PA05   Q28ZR5   A0A1W4VHJ1   B4GGW2   A0A3B0IZY6   A0A182N895   A0A3B0JK11   A0A182RTL8   A0A182LBA4   A0A182HP95   A0A182WIJ4   A0A182MI15   A0A1S4EZJ8   A0A182X492   A0A182P6B1   A0A182VGE8   A0A0L0CFV8   A0A1A9VY58   A0A182JDG6   Q17KG1   A0A1A9XJ95   A0A1A9ZNN7   A0A1B0B220   A0A1B0FDS8   A0A1A9WMS6   A0A1J1IUX4   A0A154NX82   A0A336MRB6   A0A336MG30   A0A0C9R705   A0A182TDZ5   A0A0A1X6P7   A0A0A1XHT5  

KEGG

101739339    no KO assigned | (RefSeq) homeobox protein orthopedia

GO

GO:0005634   GO:0003677   GO:0007275   GO:0043565   GO:0006355   GO:0007229   GO:0016311   GO:0016791   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

Subcellular location

Nucleus  

Length:

171

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.277650000000001

Exp number, first 60 AAs:

0.25999

Total prob of N-in:

0.42209

outside

1  -  171

 

 

Pi

195.03324

Theta

185.666555

Tajima's D

2.011714

CLR

0.352756

CSRT

0.879406029698515

Interpretation

Uncertain