Silkworm Genome Informatics Database

Gene

KWMTBOMO16160

Pre Gene Modal

BGIBMGA013940

Annotation

PREDICTED:_retinal_homeobox_protein_Rx1-like_[Amyelois_transitella]

Location

Bomo_Chr28(-):129819-188405 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.734

CDS

ATGCTAATACGACGCTTCTTGCAAACAAAATCACATCGCGACCCCAAATTTCGCACTTTCAATGGGCAATTTCGCTCCCCACCAAACGGCGGCCCCGCCCCGAAGTCTGGCTCGCCCTTAACGACTCGCTCGGCGGCAGTTTCGTTTGGGACGCGGTGCAGGATGGACGCGCCCGACGAGCGGTTTTTCGCGGACCGTTCCCCGGATCGCTCCGATACCAACAGCCCCCGCTCGGCCGTCAGCACGCCCAACTCCAACTCCTCAATAAACGTGACCGACCAGTCGATATCCCTGTCGCAGCAGAACTTGGAGACTCTCAACCGCATGGGCATGTTCTTTCACGCGCAACAAATGCAATTGAATCAAAGTTTTGACGTGAAGCGGCTCGGCTTGACCCAAGTGCCCGGTGCTAGTCAGGGCCCAAGACACAGTATAGACGCGATCCTCGGCCTCAGCTCTCAGAGGCAGGCCAGACTCAGTGAGTTCGAGCAGAGGAGAGAGGAGTGCGACCCCGTCCCCGTCTCCCCGGGAGCCGTCGAAAGCGCTGGCGAGGGTTCGTGTAACAGTAATGATGGCTACAACCAGAGAACTGATGACAAGTCGCCACCGGCTAGCGACGACGACACGCCACAGCAGTCCACGGACAACAAGAAGAAACACAGAAGAAATAGAACCACATTCACAACCTACCAGCTTCATGAGTTGGAGCGCGCCTTCGAGAAGAGTCACTATCCAGACGTGTACTCCAGAGAAGAGCTGGCTATGAAGGTCAACCTGCCAGAGGTCAGAGTTCAGGTCTGGTTCCAGAACAGGAGAGCGAAGTGGCGTCGACAGGAGAAGATGGAGGCGGCTCGGCTGGGTCTGTCCGAGTACGGGTGTGGGGGCGGTGGGATGCCGCGGCTCAGCGCACTAGGTCTGCCGGTCGATCCCTGGCTAGCCCCCCCGCTACTCAGCGCATTGCCGGGTAAGGCTCGCGATATCGTACCTTGA

Protein

MLIRRFLQTKSHRDPKFRTFNGQFRSPPNGGPAPKSGSPLTTRSAAVSFGTRCRMDAPDERFFADRSPDRSDTNSPRSAVSTPNSNSSINVTDQSISLSQQNLETLNRMGMFFHAQQMQLNQSFDVKRLGLTQVPGASQGPRHSIDAILGLSSQRQARLSEFEQRREECDPVPVSPGAVESAGEGSCNSNDGYNQRTDDKSPPASDDDTPQQSTDNKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKMEAARLGLSEYGCGGGGMPRLSALGLPVDPWLAPPLLSALPGKARDIVP

Similarity

Belongs to the paired homeobox family.

Uniprot

A0A437B4B9 A0A2W1BR54

Pubmed

28756777

EMBL

RSAL01000177 RVE45023.1 KZ149970 PZC76095.1

Proteomes

UP000283053

Pfam

PF03826 OAR + More
PF00046 Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR001356   Homeobox_dom
IPR032967   Rx-like
IPR017970   Homeobox_CS
IPR003654   OAR_dom

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A437B4B9 A0A2W1BR54

PDB

3A01 E-value=1.60013e-20, Score=244

KEGG

101739054 K09332 retina and anterior neural fold homeobox protein | (RefSeq) retinal homeobox protein Rx2-like

GO

GO:0006366 GO:0043565 GO:0005634 GO:0007275 GO:0003700 GO:0003677 GO:0006355 GO:0016311 GO:0016791 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

PANTHER

PTHR24329:SF405

Subcellular location

Nucleus

Length:

329

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01166

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02719

outside

1 - 329

Pi

246.108415

Theta

192.713978

Tajima's D

1.395184

CLR

0.34845

CSRT

0.76341182940853

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics