Silkworm Genome Informatics Database

Gene

KWMTBOMO16157

Annotation

PREDICTED:_uncharacterized_protein_LOC105390591_isoform_X2_[Plutella_xylostella]

Location

Bomo_Chr27(-):10908565-10911113 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.65

CDS

ATGGCAGACATGAAAAGTCTAATTAAAAAACGAGCTTCAATTAAAGCAAAACTAACACAATTTTCATCATATATCAACATTTCTAAATCGTGCCAAAAACTAAGTGAGAGTCAAGTGATAGAAATCGAATATCGACTTCAAAAATTCGAGTCATTATATGAGAAATATGATGCATTACAGAACGATTTGGAGTCTGTAGTGGATGATCCCAACGAGCAATATGCGGAGCGTGAGGAATTCGAGAAGCAATATTACGGCTTAGTAGCTTCTTCACGTCAGCTGATCAGTGCAGCGCGCAAGCCTCTACAGGGTGAAGCAGTCTCCGAGTTGGCTCGATTTCTGTCACAAGATTTAGAACTTAGGAATTTAGATTCAAGTATTAAATTTTCATTTATCCCTGCTTATACTCCGCATTTCGGAGGTATTTGGGAGTCTGCAGTAAAATCAACAAAATATCATTTAAAGCGCACATTAGGTCTAACAAATTTAACTTTTGACGAAATGGCAACATGTTTAACACAAATAGAAGCAATTCTAAATTCAAGACCTTTAACTCCTCTATCGGATGACCCATCCGATCTCACTCCATTAACCCCAGCTCATTTCCTTATCGGACGATCAGTGATATTTGCGCCACATCCTCAAGTACCAGATAGTACCAATATCACTAGCCTGCAGAGGTTTCGCAGAATAGAATATCTCAAGCAACACTTTTGGAAAAGGTTCTCTCAAGAATACATCTCGTGGTTGCAACAAAAATCTAAATGGTGTAAAACATCTGCAGAGCCTTTGAAAGTGGGTGATCTAGTCATCGTAAAGGAACCATCATCTCCGCTACTGTGGCCACTTGGACGCATACTTCAGCTGTACAGTGGTAGCGACGATATTGGAAGAGTTGCAGACATCTACACACGACGAGGCGTCATTCGCCGCGCTTTCAACACTATCTGCCCACTTCCCATCAATTATTGA

Protein

MADMKSLIKKRASIKAKLTQFSSYINISKSCQKLSESQVIEIEYRLQKFESLYEKYDALQNDLESVVDDPNEQYAEREEFEKQYYGLVASSRQLISAARKPLQGEAVSELARFLSQDLELRNLDSSIKFSFIPAYTPHFGGIWESAVKSTKYHLKRTLGLTNLTFDEMATCLTQIEAILNSRPLTPLSDDPSDLTPLTPAHFLIGRSVIFAPHPQVPDSTNITSLQRFRRIEYLKQHFWKRFSQEYISWLQQKSKWCKTSAEPLKVGDLVIVKEPSSPLLWPLGRILQLYSGSDDIGRVADIYTRRGVIRRAFNTICPLPINY

Uniprot

S4PWG7 D6WI41 A0A437AYN7 A0A194RAG7 A0A0J7KBV8 A0A151K200 + More
A0A0J7NFF3 A0A0A9VWY7 J9LHB7 A0A1S3DIE2 A0A1S3DHZ9 A0A3Q0JDB5 A0A3Q0JI79 A0A182GFY4 A0A2L2YR37 A0A2H1WH28

Pubmed

23622113 18362917 19820115 26354079 25401762 26483478 + More
26561354

EMBL

GAIX01006818 JAA85742.1 KQ971334 EEZ99694.1 RSAL01000267 RVE43224.1 + More
KQ460500 KPJ14270.1 LBMM01009941 KMQ87772.1 LKEX01009091 KYN50043.1 LBMM01005719 KMQ91270.1 KMQ91271.1 GBHO01042877 JAG00727.1 ABLF02022040 ABLF02056888 JXUM01060881 KQ562123 KXJ76637.1 IAAA01044800 LAA09890.1 ODYU01008608 SOQ52337.1

Proteomes

UP000007266 UP000283053 UP000053240 UP000036403 UP000078542 UP000007819 + More
UP000079169 UP000069940 UP000249989

Pfam

PF18701   DUF5641        + More
PF00665   rve
PF05380   Peptidase_A17
PF03564   DUF1759
PF05585   DUF1758
PF17921   Integrase_H2C2
PF00078   RVT_1

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001584   Integrase_cat-core
IPR036397   RNaseH_sf
IPR040676   DUF5641
IPR008042   Retrotrans_Pao
IPR008737   Peptidase_asp_put
IPR005312   DUF1759
IPR041588   Integrase_H2C2
IPR000477   RT_dom
IPR021109   Peptidase_aspartic_dom_sf
IPR001878   Znf_CCHC

SUPFAM

SSF53098 SSF53098

Gene 3D

3.30.420.10 2.40.70.10

ProteinModelPortal

S4PWG7 D6WI41 A0A437AYN7 A0A194RAG7 A0A0J7KBV8 A0A151K200 + More
A0A0J7NFF3 A0A0A9VWY7 J9LHB7 A0A1S3DIE2 A0A1S3DHZ9 A0A3Q0JDB5 A0A3Q0JI79 A0A182GFY4 A0A2L2YR37 A0A2H1WH28

KEGG

105842437 no KO assigned | (RefSeq) uncharacterized LOC105842437

GO

GO:0003676 GO:0015074 GO:0008270 GO:0006810 GO:0016020 GO:0016311 GO:0016791 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Length:

323

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01076

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04640

outside

1 - 323

Pi

332.808589

Theta

218.527554

Tajima's D

1.646651

CLR

0.024505

CSRT

0.818859057047148

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics