Gene

KWMTBOMO16155

Pre Gene Modal

BGIBMGA004521

Annotation

nicotinic_acetylcholine_receptor_beta_3_subunit_[Bombyx_mori]

Location

Bomo_Chr27(-):10888451-10889593      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.335

CDS

ATGTCTTTCATTGTTATAGATTCGTACGCCCTGGACAGCGGGAACGATCGGTTCGAGGTGACCGGTTCTCTAATCCTGAACTGGATGGACGATCGACTGCGCTGGAACCGCTCCGAATACGCCGGCATCGCTGACACGGTGATGAGGAGCGCGATGCTGTGGCTGCCGGGGTTCAGACAAGTCAATGCAGTCGGCGCGGGAGACGATGACGTTCCCTTCTACACTCTATGTAGGGTATCTTCAAGCGGCAAGGTCGAATGTAAGCTTAAGTCCGTGTTCACTTCGAGATGTCGGGTCGATCTCCGAAACTGGCCGTTGGACGTACAGCAATGTGATTTGGAGTTCGGAGCTTGGAAAGGAGACAAAGTGTTGGTGCGAGTAAAATTCCCGAATCAATTGTACATCTCAGAGGTAACGTTGGAAACTCACTGGAGGTTAACGGACTGGGAGATGAAACATAGCAACGAGTCCGAGGTGCAGACCGTGTGGACCTACACGCTGGAGCGACAGACGAGGACTCTCGCCGCTATTCTAGTGCTCCCCGCTGTGGTCCTCTCCCTGTTGTCAGCGTCGTGCTTCCTGGTGGACGTGAAAAGAACCATTCGCTTGTTGTTGTGTTGTTTCAGTCACGGCTGCCACTACAGGTTCCTGTCTCAACTACAACAATGTATCCCTAAGCACGCCGAGGATCCACCCGCCCTGCTGCTGCTGTACCGCGGCTCGCTCGTTGTCTCCGTGCTGCTGATAATGCTCAGTATCGTATTGCGATGGACGGCGACTAAAGACACTGTGGTACCGCAGCCACTCAGCACTATGAATAAAGCCGTGATGTGTAGTCGATGGAAGATGCTGATCTGGCCACAGTGGCACAGTTCTTCAGAAAGCACATGCAACAAAGAATGGACACATTTAGCTAATACAATGAATAGTATTGCGTTGGGTGTGACCTTTGTTGTTTACGCTATCCTCTTTATATTGTTCCTACCTCGGTAG

Protein

MSFIVIDSYALDSGNDRFEVTGSLILNWMDDRLRWNRSEYAGIADTVMRSAMLWLPGFRQVNAVGAGDDDVPFYTLCRVSSSGKVECKLKSVFTSRCRVDLRNWPLDVQQCDLEFGAWKGDKVLVRVKFPNQLYISEVTLETHWRLTDWEMKHSNESEVQTVWTYTLERQTRTLAAILVLPAVVLSLLSASCFLVDVKRTIRLLLCCFSHGCHYRFLSQLQQCIPKHAEDPPALLLLYRGSLVVSVLLIMLSIVLRWTATKDTVVPQPLSTMNKAVMCSRWKMLIWPQWHSSSESTCNKEWTHLANTMNSIALGVTFVVYAILFILFLPR

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.

Uniprot

A8HTE3   A8CGJ9   A0A2A4J694   A0A0A7RQA5   A0A346IHV6   A0A0H4TQD1   + More
A0A194R6T8   A0A346IHV4   A0A194PKM9   A0A2H1W2E8   H9JE62   A0A2A4K554   A8CGN6   A0A212ELJ3   A8HTD3   A0A346IHV7   A0A0A7RS18   A0A0H4U7U3   A0A0L7LQN6   B0WYT8   A8CGK0   A0A1Q3FPX8   A0A1Q3FPY3   A0A212F0R8   A0A0A7RQ77   B0XBN4   A0A2P8YR32   A0A182W8J6   A0A0C9QNY3   Q17BK7   A0A1Q3FR75   A0A2J7PCW4   A0A2P8YR35   B0WYU0   W5JG82   A0A0L7QKA6   A0A067R3K7  

Pubmed

19121390    17868469    25504620    26354079    22118469    26227816    + More
29403074    17510324    20920257    23761445    24845553   

EMBL

BABH01035424    EU143803    ABV72694.1    EU082072    ABV45509.1    NWSH01003046    + More
PCG67044.1    KP101250    AJA39826.1    MH138170    AXP17111.1    KP711054    AKQ12750.1    KQ460615    KPJ13533.1    MH138168    AXP17109.1    KQ459602    KPI93289.1    ODYU01005846    SOQ47136.1    BABH01002632    NWSH01000171    PCG78790.1    EU082087    ABV45523.1    AGBW02014057    OWR42339.1    EU143800    ABV72691.1    MH138171    AXP17112.1    KP101248    AJA39824.1    KP711053    AKQ12749.1    JTDY01000365    KOB77516.1    DS232198    EDS37198.1    EU082073    EU143802    ABV45510.1    ABV72693.1    GFDL01005386    JAV29659.1    GFDL01005385    JAV29660.1    AGBW02011029    OWR47345.1    KP101251    AJA39827.1    DS232645    EDS44383.1    PYGN01000419    PSN46711.1    GBYB01002347    JAG72114.1    CH477320    EAT43659.1    GFDL01005122    JAV29923.1    NEVH01026403    PNF14173.1    PSN46712.1    EDS37200.1    ADMH02001300    ETN63091.1    KQ414986    KOC59000.1    KK852722    KDR17732.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000002320    UP000245037    UP000075920    UP000008820    UP000235965    UP000000673    UP000053825    UP000027135   

PRIDE

A8HTE3    A8CGJ9    H9JE62    A8CGN6    A8HTD3    A8CGK0    + More

Pfam

PF02931   Neur_chan_LBD        + More
PF00226   DnaJ

Interpro

IPR006201   Neur_channel        + More
IPR036734   Neur_chan_lig-bd_sf       
IPR006202   Neur_chan_lig-bd       
IPR036719   Neuro-gated_channel_TM_sf       
IPR036869   J_dom_sf       
IPR001623   DnaJ_domain       

SUPFAM

SSF63712   SSF63712        + More
SSF90112   SSF90112       
SSF46565   SSF46565       

Gene 3D

2.70.170.10     1.10.287.110    

CDD

cd06257  DnaJ

ProteinModelPortal

A8HTE3   A8CGJ9   A0A2A4J694   A0A0A7RQA5   A0A346IHV6   A0A0H4TQD1   + More
A0A194R6T8   A0A346IHV4   A0A194PKM9   A0A2H1W2E8   H9JE62   A0A2A4K554   A8CGN6   A0A212ELJ3   A8HTD3   A0A346IHV7   A0A0A7RS18   A0A0H4U7U3   A0A0L7LQN6   B0WYT8   A8CGK0   A0A1Q3FPX8   A0A1Q3FPY3   A0A212F0R8   A0A0A7RQ77   B0XBN4   A0A2P8YR32   A0A182W8J6   A0A0C9QNY3   Q17BK7   A0A1Q3FR75   A0A2J7PCW4   A0A2P8YR35   B0WYU0   W5JG82   A0A0L7QKA6   A0A067R3K7  

PDB

5FJV     E-value=4.07013e-10,     Score=154

KEGG

100126173    no KO assigned | (RefSeq) nAChRb2, Achrb2; nicotinic acetylcholine receptor subunit beta 2

GO

GO:0004888   GO:0016021   GO:0005230   GO:0006810   GO:0016020   GO:0016311   GO:0016791   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259   GO:0006811  

PANTHER

PTHR18945  

Length:

330

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

65.26882

Exp number, first 60 AAs:

0.01645

Total prob of N-in:

0.39266

outside

1  -  172

TMhelix

173  -  195

inside

196  -  234

TMhelix

235  -  257

outside

258  -  310

TMhelix

311  -  328

inside

329  -  330

 

 

Pi

172.853204

Theta

178.052233

Tajima's D

-0.110421

CLR

0

CSRT

0.341382930853457

Interpretation

Uncertain