SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16145
Pre Gene Modal
BGIBMGA004525
Annotation
PREDICTED:_sugar_transporter_protein_isoform_X1_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.942
 

Sequence

CDS
ATGAGGGTCACACCTTTTGTGAAGCAGTGCTTTGCGGTATCGAGTGTCGTCCTGAACATGATGTCGTATGGCCTTGTGGCCGGATTCAACGCTTCCCTGTTCTCTGAACTCAGGAGGACCCGAGAGATACCTCTGGACATACATTCAGAGTCTTGGTTGGCATCTTTGATCGGATTAACGCTTTTTGGGGGCTCTGTGATTAGTTCACTAGTGATGGAAGCCATTGGACGGAGACCAGCTATTCTAGCGAGTTCAGTTTTTATGATTTGCGGGTGGATATTGCTCAGTCTAGCTTCATCCTTTCCTGTCTTGTTAACGGCGAAAATTTGTCATGGAATATCCTTTGGATTAGAATCACCGAGCTTTCTGGTAACTAAGGGACGTTACGATGAATGCAGGAAAGTTTTCCGCTGGTTGAGGGGAACAGATGAGAATGACGAACTCGAAACAATGATTAAAACTCATATGGTACTTAAAGCAAATAAGCAAAGGCAGAGAATTAAAGTATTAACATTAATCAAGAACAAAGCGACATGCATCGTGACAGCTTTTAAAAAGAGAGAAGTTCGAATTCCAATAATTATTTCGATGCACTTGATGGCTATAAATCAGTTCTGCGGGTCTACGGTTAACGACATGTATGCTCTAGACGTCCACACCGCGTTGTACGGAACTAATGTCTACATGTTCAAAGTAATGACGTCACTAGATGTGCTAAGACTCACTGCGGCTCTGTCAGCAGTTTATATAACAAAAAAATTAGGGCGGCGTTCCATGCTGCTAATATTTGTGTCCTTGAATATATTCGTCAACCTGTGCCTAGCTGGACACATTTTTGCAAGACAACGTGATCTTCTACCTGCTTCACATATGGTAATAGGTGTCATTCTGCATCATTTTCAATGCTTCATTATGGGGACTGGATCCATACCCTTGATATTTGTAATTGCTGGTGAAATATTCCCTTTGGAATATAGGGGTTTATGTTGGATGGTGTCAAGTATATTCAGCTCCACTTTCATGTTCGTGAACATCAAATCAGCTCCGTATCTGTTCTCGTTGTTCGGCGTTGACGGGACGTTATGTTTTTATGCTTTGATTCTTGCCTATAGTCTAGTTGTCACTCGTATTTATTTACCGGAGACTAAAGACAAAACTCTTCAGGAAGTCGAAGATGAAATTAGGGGATTCGCTCTCCTCAGTCACGAAGAAGCGTTTGAGTTGAAGAGTGATAAAGCGGATGGGGAAGATTAA
Protein
MRVTPFVKQCFAVSSVVLNMMSYGLVAGFNASLFSELRRTREIPLDIHSESWLASLIGLTLFGGSVISSLVMEAIGRRPAILASSVFMICGWILLSLASSFPVLLTAKICHGISFGLESPSFLVTKGRYDECRKVFRWLRGTDENDELETMIKTHMVLKANKQRQRIKVLTLIKNKATCIVTAFKKREVRIPIIISMHLMAINQFCGSTVNDMYALDVHTALYGTNVYMFKVMTSLDVLRLTAALSAVYITKKLGRRSMLLIFVSLNIFVNLCLAGHIFARQRDLLPASHMVIGVILHHFQCFIMGTGSIPLIFVIAGEIFPLEYRGLCWMVSSIFSSTFMFVNIKSAPYLFSLFGVDGTLCFYALILAYSLVVTRIYLPETKDKTLQEVEDEIRGFALLSHEEAFELKSDKADGED

Summary

Similarity
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
EMBL
FJ373021    ACQ66002.1    BABH01035466    BABH01035467    GQ871755    ADM86146.1    + More
BABH01035469    BABH01035543    BABH01035544    BABH01035538    BABH01035539    ODYU01011356    SOQ57052.1    KZ150249    PZC71836.1    NWSH01000008    PCG80953.1    RSAL01000045    RVE50592.1    BABH01035548    KJ439227    KZ150491    AHX25878.1    PZC70688.1    AGBW02010956    OWR47467.1    NWSH01000704    PCG74682.1    KQ460077    KPJ17887.1    KQ458671    KPJ05561.1    JTDY01002352    KOB71610.1    ODYU01007122    SOQ49615.1    AGBW02008317    OWR53759.1    NWSH01000578    PCG75536.1    PZC71835.1    KPJ05554.1    RSAL01000460    RVE41642.1    BABH01035527    BABH01035528    BABH01035529    BABH01025733    RVE50588.1    PZC70687.1    BABH01025731    ODYU01000118    SOQ34347.1    KPJ17881.1    PCG80949.1    KPJ17880.1    RSAL01000017    RVE52904.1    BABH01025717    PZC71838.1    PCG75537.1    KPJ05583.1    PCG74684.1    KOB71609.1    PCG74683.1    BABH01025720    RVE50594.1    ODYU01008354    SOQ51875.1    AGBW02009205    OWR51384.1    SOQ49614.1    AGBW02002687    OWR55626.1    BABH01038881    RSAL01000181    RVE44925.1    ODYU01007347    SOQ50032.1    BABH01038850    SOQ49613.1    AGBW02009614    OWR50324.1    NWSH01002771    PCG67556.1    KZ150133    PZC73021.1    ODYU01009098    SOQ53272.1    NWSH01001042    PCG72950.1    DS231843    EDS35465.1    JTDY01000230    KOB78170.1    OWR50323.1    SOQ50033.1    KPJ05573.1    KPJ17891.1    KPJ05563.1    RVE44926.1    KPJ05559.1    JXUM01009472    KQ560284    KXJ83288.1    EDS35464.1    ODYU01012470    SOQ58795.1    JXUM01086634    KQ563580    KXJ73638.1    CH477213    EAT47626.1    KQ458842    KPJ04897.1    KQ459890    KPJ19576.1    KZ150062    PZC74196.1    KPJ19577.1    BABH01018801    BABH01009421   
Pfam
PF00083   Sugar_tr        + More
PF07690   MFS_1
Interpro
IPR005829   Sugar_transporter_CS        + More
IPR020846   MFS_dom       
IPR036259   MFS_trans_sf       
IPR005828   MFS_sugar_transport-like       
IPR003663   Sugar/inositol_transpt       
IPR011701   MFS       
SUPFAM
SSF103473   SSF103473       
PDB
6N3I     E-value=1.91189e-06,     Score=124

Ontologies

Topology

Length:
417
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
168.19139
Exp number, first 60 AAs:
31.24269
Total prob of N-in:
0.53624
POSSIBLE N-term signal
sequence
outside
1  -  9
TMhelix
10  -  32
inside
33  -  52
TMhelix
53  -  75
outside
76  -  84
TMhelix
85  -  107
inside
108  -  257
TMhelix
258  -  280
outside
281  -  294
TMhelix
295  -  317
inside
318  -  329
TMhelix
330  -  352
outside
353  -  356
TMhelix
357  -  379
inside
380  -  417
 
 

Population Genetic Test Statistics

Pi
237.677078
Theta
187.129473
Tajima's D
1.277654
CLR
0.195052
CSRT
0.732213389330533
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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