Gene

KWMTBOMO16143

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr27(+):10244761-10245755      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.774

CDS

ATGTTAGGTCTTCGCGAGTCTTGGAACTTCCGCGCTCACTTCGAGAAGTTAGGCCCTCGGCTGATGGCGACGGCTGGCTCGTTGAGCCGGCTCTTGCCAAACGTCGGGGGGCCCGACGCAGTAGTACGTCGTCTCTACGTGGGGGTGGTGCGGTCCATGGCACTATATGGGGCCCCCGTGTGGTGCCGCGCCCTGACTCGCAGGAACATCGCGGCCCTGCGACGCCCGCAGCGTGCAATCGCGGTCAGGGCGATCCGTGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCGTTCTCGCCGGGACGCCTCCCTGGGACCTGGAGGCGGAGGCGCTCGCCGCCGATTATGCGTGGCGATGTGACCTTCGCGACAGGGGGGAACCACGTCCCGGAGAAGGAGCGATTAGAGCGCGGAGGCTCCAATCTCGGCGGTCTGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGAACCCGTCGGCCGGTCTCCGGACCGTCGAGGCGGTGCGCCCGGTCCTCGCGGAATGGGCGAACCGTGACCAAGGGCGTCTCACCTTCCGGTTGACGCAGATGCTTACCGGCCATGGGTGTTTTGGCCGGTACCTGCGTCACATCGCCCGGAGGGAACCGACGATGGAGTGTCACCACTGTGACTGCGACGAGGACACGGTCGAGCATACGCTCGCATATTGCCCCGCATGGCTGGAGCAACGCCGTGTCCTTGTCTCGCAAATAGGACCGGACTTATCGCTGCCGACCGTCGTGGCCACGATGCTCGGCAGCGATGAGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTACACCATCTCGCAGAAGGAGGCGGCGGAACGAGAGAGGGAGAGCTCATCCCTCTCCGCACCTATCCGTCGCCGCCGAGTCGGGGGCCGGAGAAGGGCCTTTGCCCGACTCCAGCCCCTGTAG

Protein

MLGLRESWNFRAHFEKLGPRLMATAGSLSRLLPNVGGPDAVVRRLYVGVVRSMALYGAPVWCRALTRRNIAALRRPQRAIAVRAIRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRDRGEPRPGEGAIRARRLQSRRSVLEAWSRRLANPSAGLRTVEAVRPVLAEWANRDQGRLTFRLTQMLTGHGCFGRYLRHIARREPTMECHHCDCDEDTVEHTLAYCPAWLEQRRVLVSQIGPDLSLPTVVATMLGSDESWKAMLDFCEYTISQKEAAERERESSSLSAPIRRRRVGGRRRAFARLQPL

Uniprot

Q5KTM7   Q868Q4   A0A2W1BDU5   A0A2W1B333   A0A2W1BSQ5   Q8MY27   + More
Q8MY33   Q8MY31   Q8MY35   A0A3S2N998   A0A0J7N1D9   A0A0J7N7H9   A0A2W1C3J5   O01419   A0A0J7MY07   A0A0J7KCQ3   E2BVR6   A0A0J7MZM4   A0A0J7KS67   A0A0J7KIY3   A0A0J7KIY5   A0A2H1WNZ5   A0A0J7N7S8   A0A0J7KJG6   A0A0L7R7C3   A0A0J7KM81   A0A0J7KQK3   A0A0J7JZ13   A0A0J7JZF7   A0A0J7KIW1   A0A0J7NEG9   A0A0J7KIM6   A0A0J7KJH4   A0A194R5D3   A0A3L8DDV9   A0A0J7KLT9   A0A2S2P6S8   A0A3L8D2G3   A0A0J7KYD2   A0A0J7JXN3   A0A2S2NME4   A0A0J7KFG9   A0A0J7KPR0   A0A0J7KL06   J9KJG8   J9KLZ3   A0A0J7K3R6   A0A2H8TR36   A0A0J7NMN5   A0A0J7KPZ3   A0A3L8DIL1   V5I8F3   A0A0J7KF37   E2A7V5   A0A0J7KWU5   A0A2S2NPF9   A0A0J7NAV8   A0A2S2PJ67   A0A0J7MX22   A0A0J7K3R2   A0A2S2P488   A0A0J7KRB8   A0A0J7KGJ6   A0A0J7N0R3   A0A2S2NJ82   A0A0J7KFH2   A0A0J7JYP2   A0A2S2QW03   A0A0J7KP92   A0A0J7KC11   J9KNG8   A0A0J7K6Z4   A0A2S2P557   J9KV04   A0A2S2QUS9   A0A2S2PDK9   A0A0J7K840  

Pubmed

12644555    28756777    9092665    20798317    26354079    30249741    + More

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    KZ150308    PZC71477.1    + More
KZ150386    PZC71062.1    KZ149950    PZC76665.1    AB078935    BAC06462.1    AB078930    BAC06454.1    AB078931    BAC06456.1    AB078929    BAC06452.1    RSAL01000481    RVE41577.1    LBMM01012027    KMQ86470.1    LBMM01008861    KMQ88580.1    KZ149896    PZC78733.1    D85594    BAA19776.1    LBMM01014132    KMQ85305.1    LBMM01009494    KMQ88097.1    GL450953    EFN80213.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01003679    KMQ93242.1    LBMM01006909    KMQ90209.1    LBMM01006954    KMQ90166.1    ODYU01009945    SOQ54696.1    LBMM01008682    KMQ88705.1    LBMM01006671    KMQ90407.1    KQ414641    KOC66782.1    LBMM01005634    KMQ91349.1    LBMM01004272    KMQ92618.1    LBMM01019839    KMQ83438.1    LBMM01019838    KMQ83439.1    LBMM01006725    KMQ90373.1    LBMM01006110    KMQ90925.1    LBMM01007036    KMQ90099.1    LBMM01006657    KMQ90417.1    KQ460685    KPJ12887.1    QOIP01000010    RLU18098.1    LBMM01005733    KMQ91252.1    GGMR01012534    MBY25153.1    QOIP01000031    RLU14697.1    LBMM01002052    KMQ95336.1    LBMM01024024    KMQ82631.1    GGMR01005740    MBY18359.1    LBMM01008349    KMQ88951.1    LBMM01004634    KMQ92224.1    LBMM01006063    KMQ90967.1    ABLF02041886    ABLF02023401    ABLF02029423    ABLF02060278    LBMM01015018    KMQ84954.1    GFXV01003903    MBW15708.1    LBMM01003245    KMQ93755.1    LBMM01004505    KMQ92346.1    QOIP01000007    RLU20280.1    GALX01004785    JAB63681.1    LBMM01008448    KMQ88867.1    GL437417    EFN70484.1    LBMM01002480    KMQ94776.1    GGMR01006442    MBY19061.1    LBMM01007425    KMQ89740.1    GGMR01016864    MBY29483.1    LBMM01014909    KMQ85000.1    LBMM01014956    KMQ84982.1    GGMR01011682    MBY24301.1    LBMM01003988    KMQ92922.1    LBMM01007659    KMQ89538.1    LBMM01012412    KMQ86235.1    GGMR01004600    MBY17219.1    LBMM01008278    KMQ89009.1    LBMM01020849    KMQ83202.1    GGMS01012744    MBY81947.1    LBMM01004697    KMQ92167.1    LBMM01009738    KMQ87908.1    ABLF02005203    ABLF02041316    LBMM01012595    KMQ86127.1    GGMR01011974    MBY24593.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    GGMS01012210    MBY81413.1    GGMR01014918    MBY27537.1    LBMM01011877    KMQ86578.1   

Proteomes

UP000283053    UP000036403    UP000008237    UP000053825    UP000053240    UP000279307    + More
UP000007819    UP000000311   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07776   zf-AD
PF00096   zf-C2H2
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF17919   RT_RNaseH_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A2W1BDU5   A0A2W1B333   A0A2W1BSQ5   Q8MY27   + More
Q8MY33   Q8MY31   Q8MY35   A0A3S2N998   A0A0J7N1D9   A0A0J7N7H9   A0A2W1C3J5   O01419   A0A0J7MY07   A0A0J7KCQ3   E2BVR6   A0A0J7MZM4   A0A0J7KS67   A0A0J7KIY3   A0A0J7KIY5   A0A2H1WNZ5   A0A0J7N7S8   A0A0J7KJG6   A0A0L7R7C3   A0A0J7KM81   A0A0J7KQK3   A0A0J7JZ13   A0A0J7JZF7   A0A0J7KIW1   A0A0J7NEG9   A0A0J7KIM6   A0A0J7KJH4   A0A194R5D3   A0A3L8DDV9   A0A0J7KLT9   A0A2S2P6S8   A0A3L8D2G3   A0A0J7KYD2   A0A0J7JXN3   A0A2S2NME4   A0A0J7KFG9   A0A0J7KPR0   A0A0J7KL06   J9KJG8   J9KLZ3   A0A0J7K3R6   A0A2H8TR36   A0A0J7NMN5   A0A0J7KPZ3   A0A3L8DIL1   V5I8F3   A0A0J7KF37   E2A7V5   A0A0J7KWU5   A0A2S2NPF9   A0A0J7NAV8   A0A2S2PJ67   A0A0J7MX22   A0A0J7K3R2   A0A2S2P488   A0A0J7KRB8   A0A0J7KGJ6   A0A0J7N0R3   A0A2S2NJ82   A0A0J7KFH2   A0A0J7JYP2   A0A2S2QW03   A0A0J7KP92   A0A0J7KC11   J9KNG8   A0A0J7K6Z4   A0A2S2P557   J9KV04   A0A2S2QUS9   A0A2S2PDK9   A0A0J7K840  

KEGG

105841478    no KO assigned | (RefSeq) uncharacterized LOC105841478

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

311

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.21511

Exp number, first 60 AAs:

0.16331

Total prob of N-in:

0.00834

outside

1  -  311

 

 

Pi

147.822547

Theta

76.242853

Tajima's D

2.388376

CLR

169.267397

CSRT

0.933453327333633

Interpretation

Uncertain