SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16142
Pre Gene Modal
BGIBMGA004527
Annotation
PREDICTED:_sugar_transporter_protein_2_isoform_X1_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.831
 

Sequence

CDS
ATGTGTCGACTAACGCGTCGCGAAAAATGGATCACGCCGTTTACGAAGCAGTGTTTTGCGGTTTCGAGTGTGGTTTTGAATATGATATCGCATGGCATGACCTCCGGGTACAACGCCTCACTGTTCTCTGAACTTCGGAAGACGCGAGAGATACCTCTCGACGTAGATTCCGAATCCTGGTTAGCATCTCTGATCGGAGTAACACTCTTAGTTGGTTCTGTCGTCAACTCGTTCGTAATGGAAATCATTGGCAGAAAACCAGCAATCCTATTGAGTTCAGTGCTCACCATCTGCGGATGGATATCATTCAGCTTGGCGTCGTCTTTTCCCGCTTTGTTGATCGGAAAAATATTTCAGGGGATATCCGTTGGGATTGGTGGGAGTGTGGGAAGTATCTTAATCGGAGAATACACTAGTCCTAGATATAGAGGACCTTTTATAGCGGCAGTACCTACCGCGATCTTGGTTGGGATATTGATTTCACATACATTCGGAATGTTTTATGGCTGGCATGATTTATCATCGGTGCTACTATTTTTTTCTTTGCCCGGATTAGTTGTGGCGGTATTCTCGCCGGAATCGCCCAGTTTTCTGGTAACAAAAGGACGTTACGATGAATGCAGAAAGGTTTTTCGCTGGTTGAGGGGTACAGATGAGGATAACGAACTCGAAACAATGATTGAAACTGATAAAATCCTAAAGGAAACTAAAAGGGCTTACACGGGTATTACATCGCAGCTAATTCGAATTAAACTGACGTATGTTGTGGCAGCTTTCAAAAAGAGAGAATTCCGCATTCCCGTAATCATTATGACGCACCTAAATGCTATATTAGAATTTTGTGGTTCTATAATGAGCGATGTTTACGCTCTAGATGTCCACACAGCTTTCTATGGCACTGACGTTTACATGTTTACAGTAATCACAACACTAGACGTGCTCAGACTTGTAGCGACTGTCTCAGGAATTTACATCACCAGCAGAGTCAAAAGACGTTCAATGATGTTAATATTTGTGTCTTTGAATGTAATTGTGAATCTGAGCATAGCTGGGTACATCTACGCTAGACAACGAGGTGTTCTTCCCTTTGACCACGTGGCAATAGGTTTGTTTTTGCATCATTTCCTTTACTTCATAATTGGGGCTGGGCCCATGCCATTGTCAGGGATAATTACCGGTGAAATATTTCCTTTAGCGGACAGGGGCTTGTGTTCGATAATTAGTAGAATAACATGCTCCATATACTTGTTTGGAGACATTAAATCTGCCCCGTACCTGTTCACGATAGTGGGCGTCGAAGGAGTGTTTGGTTTGTATGGTTTGATTCTTGCATATAGTTTGGTCGTGACTTTAATTTATTTACCGGAAACTAAAGACAGAACTCTTCAAGAAGTCGAAGATGGGTTTAGGGGATACGCTATCGGCGAACGCGAGGAAGCGCTCGAGTTGAAATGTAATGAACTAAAGGATGACGTATAA
Protein
MCRLTRREKWITPFTKQCFAVSSVVLNMISHGMTSGYNASLFSELRKTREIPLDVDSESWLASLIGVTLLVGSVVNSFVMEIIGRKPAILLSSVLTICGWISFSLASSFPALLIGKIFQGISVGIGGSVGSILIGEYTSPRYRGPFIAAVPTAILVGILISHTFGMFYGWHDLSSVLLFFSLPGLVVAVFSPESPSFLVTKGRYDECRKVFRWLRGTDEDNELETMIETDKILKETKRAYTGITSQLIRIKLTYVVAAFKKREFRIPVIIMTHLNAILEFCGSIMSDVYALDVHTAFYGTDVYMFTVITTLDVLRLVATVSGIYITSRVKRRSMMLIFVSLNVIVNLSIAGYIYARQRGVLPFDHVAIGLFLHHFLYFIIGAGPMPLSGIITGEIFPLADRGLCSIISRITCSIYLFGDIKSAPYLFTIVGVEGVFGLYGLILAYSLVVTLIYLPETKDRTLQEVEDGFRGYAIGEREEALELKCNELKDDV

Summary

Similarity
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
EMBL
GQ871755    ADM86146.1    BABH01035469    BABH01035544    FJ373021    ACQ66002.1    + More
BABH01035543    BABH01035538    BABH01035539    AGBW02010956    OWR47467.1    ODYU01011356    SOQ57052.1    RSAL01000045    RVE50592.1    BABH01035527    BABH01035528    BABH01035529    KZ150249    PZC71836.1    KQ458671    KPJ05558.1    NWSH01000008    PCG80953.1    AGBW02008317    OWR53759.1    KPJ05561.1    KQ460077    KPJ17887.1    RSAL01000460    RVE41642.1    KPJ17881.1    BABH01025717    KJ439227    KZ150491    AHX25878.1    PZC70688.1    BABH01035548    KQ458981    KPJ04505.1    NWSH01000704    PCG74682.1    NWSH01000578    PCG75536.1    ODYU01007122    SOQ49615.1    PZC71835.1    KPJ05554.1    ODYU01008354    SOQ51875.1    RVE50588.1    JTDY01002352    KOB71610.1    RVE50589.1    PCG74683.1    BABH01025733    SOQ49614.1    KPJ17880.1    KPJ05555.1    PCG80949.1    BABH01025731    NWSH01001042    PCG72950.1    PZC71838.1    RSAL01000181    RVE44925.1    ODYU01000118    SOQ34347.1    PCG74684.1    AGBW02009205    OWR51384.1    AGBW02009614    OWR50324.1    NWSH01002771    PCG67556.1    KPJ17891.1    BABH01038881    PCG75537.1    KZ150133    PZC73021.1    RVE50594.1    ODYU01007347    SOQ50032.1    KOB71609.1    KPJ05573.1    KPJ05583.1    KPJ17884.1    RSAL01000017    RVE52904.1    KPJ05563.1    JTDY01004123    KOB68566.1    BABH01025720    SOQ49613.1    KPJ05572.1    OWR50323.1    BABH01038877    BABH01038878    BABH01038879    BABH01038880    ODYU01012470    SOQ58795.1    JTDY01000230    KOB78170.1    ODYU01009373    SOQ53753.1    PCG80950.1    RVE44926.1    AGBW02013662    OWR43027.1    ODYU01009098    SOQ53272.1    PZC71837.1    GQ871756    ADM86147.1    UFQT01001316    SSX30005.1    CH477213    EAT47626.1    ATLV01010625    KE524589    KFB35580.1    BABH01025724    JXUM01009472    KQ560284    KXJ83288.1    NWSH01006268    PCG63546.1    UFQT01000224    SSX22028.1    JXUM01086634    KQ563580    KXJ73638.1    AXCM01002831    BABH01018801    KQ460126    KPJ17588.1    AAAB01008960   
Pfam
PF00083   Sugar_tr
Interpro
IPR005828   MFS_sugar_transport-like        + More
IPR036259   MFS_trans_sf       
IPR005829   Sugar_transporter_CS       
IPR020846   MFS_dom       
IPR003663   Sugar/inositol_transpt       
SUPFAM
SSF103473   SSF103473       
PDB
4LDS     E-value=4.39855e-13,     Score=182

Ontologies

Topology

Length:
492
Number of predicted TMHs:
12
Exp number of AAs in TMHs:
251.75556
Exp number, first 60 AAs:
22.78868
Total prob of N-in:
0.98460
POSSIBLE N-term signal
sequence
inside
1  -  18
TMhelix
19  -  41
outside
42  -  60
TMhelix
61  -  83
inside
84  -  89
TMhelix
90  -  112
outside
113  -  116
TMhelix
117  -  139
inside
140  -  145
TMhelix
146  -  168
outside
169  -  177
TMhelix
178  -  200
inside
201  -  265
TMhelix
266  -  288
outside
289  -  302
TMhelix
303  -  325
inside
326  -  337
TMhelix
338  -  355
outside
356  -  369
TMhelix
370  -  392
inside
393  -  404
TMhelix
405  -  427
outside
428  -  431
TMhelix
432  -  454
inside
455  -  492
 
 

Population Genetic Test Statistics

Pi
233.692941
Theta
156.134089
Tajima's D
2.486136
CLR
0.257104
CSRT
0.943152842357882
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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