Silkworm Genome Informatics Database

Gene

KWMTBOMO16135

Pre Gene Modal

BGIBMGA004530

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr27(-):10055003-10148195 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.535

CDS

ATGGCGTCGATAAACAGCTGCGGGGAATTGAAGAGTCCCGGGGACCCAGAGAAAAAGATCCCGGATACCGACGCTGAGAAACAACCGCTTTCCGGGAAAAAAGAAGAAAAATGGTGGACCACATTGATGCAGGTAGCTGTACCCTTCTTTATAGCTGGCTGCGGTACCATCGGAGCTGGTTTGGTGCTCGGCACAGTTAGGGATTGGGATGTTTTTATAAACATATCGGCCATTTTCGTTCTTGTGCCCTCACTGTCAGGACTAAAGGGTAACCTGGACATGTGTCTCGCATCTCGACTGTCAACGCAGGCGAATTTGGGCAACATGGACTCCACGAAGGAGGTCATCTCGATGGTCGTTGGAAACATATCATTGGTTCAGGTTCAAGCTATAGTGGCTGCGACTGTGGTCTCTATATTCGCCATCGTGGTGAACACGATCACGGACCGCGCCATCTTCGGGCCCTACGTCCTCCTGCTAGTCGCGTGCGCCGTCTTCACTGCTACGACCACTTGCTTTGTGTTGGATTTCGTGATGGTAATGGTGATATACGCGTCGCACAGGTTCAAGGTGAACCCGGACAACGTGGCGACTCCGCTGGCGGCCTCCATCGGGGACATCGTCAGCAATACGGTGCTAGCGGTCACCGCCCAGTACATGTACGAGCAGATCCAGGTGTCTCTGTGGCAGCCCATCGCGTTGATCTGCGTGTACTACAGCCTCCTCCCGCTCTGGGTGTTCATCGTCTGGAGGAACAAGTACACCAAGACCGTCCTCACCAGCGGCTGGACCCCCGTCATCTCCGCCCTGTTCATAAGCGGTATCGGCGGTATAGTCCTGGACCAGGCCGTCGATTACTTCCGAGGGTACGAGGTGTTCCAGCCGATCGTGAATGGAATCGGGGGGAACCTGGTGTGCGTGCAGTCGTCCCGGCTGGCCACGCACCTCCACCAGACCGCCATCCCCGGGATCCTGCCGGAGAACACTAAGATCATTGAGTGGCCTTGGAAGACTTTGTTCTTTGGAACGACCGCGGCGAACGTGGCTCGCATGCTGCTGATCCTGGCCGTCTTCGGGCAGATAATCTTCATGGTGGTCGCGGACTTCGTGTACCAGGGGACGGTCACCATCCAGTTCGCGTTCGGCATCACGTACCTCACGTGCGCCCTGCTGCAGTTAAATTCTCTGGAACATCTATATATTAATATGTTCTGCTTTTCCTCTGCTGATCCTGACGTCTGTGCGGACCGTCTTAAAGACGTGGTGCTCCAGGGGATGGAATTGTTTATTCCCTCCTCTGAAGTGCCCGTTGGAGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGGATGCTGCACACCTCAAGCGGTCCGCATACGTGGCATGGGATAATGCCAGGAGACGTCAGGACCCTAACATCTCAGAGGAAAGGCGGAAATATAACGCCGCTTCCAGGTCCTACAAGAAGGTTATTGCCAAGGCGAAGTCGGAGCACGTTGCTAGAGTTGGCGAGCGACTAAAGAGCTATCCCTCTGGGAGCCGTGCTTTTTGGTCGCTCGCCAAAGCCGCAGAAGGAAACTTTTGCAGGTCTAGTCTCCCACCACTGCGAAAGTCCGATGACAGTCTGGCCCATAGTGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACCGTGGACGACGGGGGTGCTACACCACCGAACATCCCCCGGTGTGATAGTTCCCTGCCGGAGATCTGCTTTACACAGTGTGCAGTCAGGCGGGAACTCCGACTCCTGGACGTCCATAAGTCGAGTGGGCCAGACGGCATCCCCGCAGTGGTTCTGAAAACGTGCGCCCCTGAGCTGACGCCTGCGCTAACGCGTCTGTATCGCCTCTCTTATTGCGCTAACAGGGTTCCGTCTTCATGGAAGACCGCCCATGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTATAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATAATAAATATACAACTCCTGAAGTATCTTGAAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTCGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGATTGCTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCAATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAGGAGAGACGAACAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGATTCAATTCAACCCGTTAAAGACACAAATTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATCTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGCATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGTCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAACGGTAGGCAGCGGCTTGGCTCTGTCCCTGGCATTGCTGAAGTGATGCTGCTCCTTTACCTGGCCTACATCGTGATCCACTTCATGTGGAAGAGGAAGAAGGACCCCGACAATGCCGCCATCCCCTACCTCACGGCGCTCGGAGACCTCCTCGGCTCCGTGTTCCTGGGACTCGCCTTCGTCATCCTGTCCCTCTTCGGACTGGAATACGGCAATAATGTCCAGTGA

Protein

MASINSCGELKSPGDPEKKIPDTDAEKQPLSGKKEEKWWTTLMQVAVPFFIAGCGTIGAGLVLGTVRDWDVFINISAIFVLVPSLSGLKGNLDMCLASRLSTQANLGNMDSTKEVISMVVGNISLVQVQAIVAATVVSIFAIVVNTITDRAIFGPYVLLLVACAVFTATTTCFVLDFVMVMVIYASHRFKVNPDNVATPLAASIGDIVSNTVLAVTAQYMYEQIQVSLWQPIALICVYYSLLPLWVFIVWRNKYTKTVLTSGWTPVISALFISGIGGIVLDQAVDYFRGYEVFQPIVNGIGGNLVCVQSSRLATHLHQTAIPGILPENTKIIEWPWKTLFFGTTAANVARMLLILAVFGQIIFMVVADFVYQGTVTIQFAFGITYLTCALLQLNSLEHLYINMFCFSSADPDVCADRLKDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAAHLKRSAYVAWDNARRRQDPNISEERRKYNAASRSYKKVIAKAKSEHVARVGERLKSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRCDSSLPEICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRTKLVSEVENSLGRVSKWGELNLIQFNPLKTQICAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLNGRQRLGSVPGIAEVMLLLYLAYIVIHFMWKRKKDPDNAAIPYLTALGDLLGSVFLGLAFVILSLFGLEYGNNVQ

Uniprot

NA

ProteinModelPortal

NA

PDB

6AR3 E-value=6.49747e-06, Score=124

KEGG

101746660 K15122 solute carrier family 41 | (RefSeq) solute carrier family 41 member 1-like

GO

GO:0006812 GO:0008324 GO:0046872 GO:0016311 GO:0016791 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Length:

1168

Number of predicted TMHs:

10

Exp number of AAs in TMHs:

222.430870000001

Exp number, first 60 AAs:

18.28795

Total prob of N-in:

0.03755

POSSIBLE N-term signal

sequence

outside

1 - 41

TMhelix

42 - 64

inside

65 - 70

TMhelix

71 - 88

outside

89 - 122

TMhelix

123 - 145

inside

146 - 157

TMhelix

158 - 180

outside

181 - 227

TMhelix

228 - 250

inside

251 - 256

TMhelix

257 - 279

outside

280 - 347

TMhelix

348 - 370

inside

371 - 376

TMhelix

377 - 396

outside

397 - 1098

TMhelix

1099 - 1121

inside

1122 - 1133

TMhelix

1134 - 1156

outside

1157 - 1168

Pi

230.089247

Theta

159.477442

Tajima's D

2.115105

CLR

0.15567

CSRT

0.900304984750762

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree