SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16126  Validated by peptides from experiments
Annotation
heat_shock_protein_hsp20.1_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.011
 

Sequence

CDS
ATGTCTCTGCTGCCATTCATCCTGGGATACCAACCGAACCGCCTTCGCGATCAGGACTTCGGACTGGCGCTTACTCCGGACGATCTCCTGACGGCCGTCATCACGCCAACGATGTCCAGAGATTACTACCGGCCGTGGAAGCAGATGGCGATGGCCAATAGAGACGTCGGTTCCACCATCACCTCGAATAAGGACAAATTCCAGGTCAACTTAGACGTTCAACACTTTTCGCCCGAAGAAATCTCAGTGAAGACAGCCGACGGCTACGTCATCGTCGAAGGTAAGCACGAGGAGAGGCAGGACGAGCACGGCTACATCTCTCGTCAGTTCACGCGGCGTTACGCTCTGCCAGAAAACTGTAACCCCGACACTGTCGAATCTCGGCTGTCCTCTGACGGCGTGCTGACCGTGATCGCTCCCAGGACTCCGGCTGCCACGAAGAACGAGCGAGCTGTTCCCATCACTCAAACCGGCCCGGTCCGGAAGGAGATTAAGGAGCCCACTGCGGAAGTTGAGAGCAACGAAACAAAACAATGA
Protein
MSLLPFILGYQPNRLRDQDFGLALTPDDLLTAVITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESNETKQ

Summary

Similarity
Belongs to the small heat shock protein (HSP20) family.
EMBL
AB195971    BAD74196.1    FJ602780    ACM24346.1    AGBW02011158    OWR47131.1    + More
MG816464    AYA93248.1    AGBW02012988    OWR44131.1    NWSH01001148    PCG72391.1    RSAL01000078    RVE48718.1    KY701309    ASK86231.1    KX958479    ASQ43195.1    DQ063591    AAZ14792.1    ODYU01005718    SOQ46845.1    AGBW02008361    OWR53574.1    HQ219475    ADX96000.1    KP843906    AKS40085.1    KJ461920    AHW45922.1    KX977585    ATN45244.1    KJ461916    AHW45918.1    KQ460891    KPJ10838.1    KQ459460    KPJ00669.1    HM046613    ADK55520.1    MF067296    ASM61894.1    NWSH01002265    PCG68755.1    KM881570    AJQ22645.1    AF315317    AF315319    FJ602772    AAG30944.1    AAG30946.1    ACM24338.1    KX845562    KZ150055    ATB54993.1    PZC74337.1    KR137569    ALI87024.1    KX958476    ASQ43192.1    KU096844    AMY63177.1    JX491641    KC710020    AB244517    AGC23337.1    AGM90553.1    BAE94664.1    KJ461917    AHW45919.1    SOQ46844.1    NWSH01003339    PCG66520.1    PCG66521.1    AB251898    BAF03558.1    KC710018    KC710022    AGM90551.1    AGM90555.1    KX845559    ATB54990.1    PZC74333.1    U94328    AAC36146.1    AK402622    BAM19244.1    HM046617    ADK55524.1    KC710019    KC710024    RSAL01000012    AGM90552.1    AGM90557.1    RVE53491.1    BABH01025846    AF315318    AAG30945.2    KP843896    AKS40075.1    RVE53492.1    AB195970    BAD74195.1    PZC74338.1    PCG68757.1    ODYU01012514    SOQ58867.1    KPJ10841.1    KPJ00666.1    GDQN01008714    JAT82340.1    AGBW02014566    OWR41397.1    AGBW02008280    OWR53838.1    KM217080    AJA32868.1    GAIX01014246    JAA78314.1    KM217079    AJA32867.1    KX977584    ATN45243.1    HM046615    ADK55522.1    KPJ10837.1    SOQ46842.1    JTDY01014370    KOB52036.1    HQ647012    AET10424.1    EU668902    ACD01216.1    KZ150133    PZC73025.1    ODYU01009326    SOQ53668.1    JQ708200    AFQ02692.1    AY829748    AAV91362.1    KJ461913    AHW45915.1    JTDY01002160    KOB71979.1    NWSH01000008    PCG80951.1    AY829747    AY829775    AAV91361.1    AAV91389.1    FJ602788    ACM24354.1    KM217077    KM217078    AJA32865.1    OWR41396.1    DQ336356    ABC68342.2    GAIX01009047    JAA83513.1    HQ219477    ADX96002.1    BABH01042227    KX958471    ASQ43187.1    KP843904    AKS40083.1    JTDY01002346    KOB71621.1    KC689795    KX845561    KZ150027    AGQ42773.1    ATB54992.1    PZC74791.1    KX958480    ASQ43196.1    KQ460970    KPJ10176.1    ODYU01008627    SOQ52368.1    NWSH01000548    PCG75721.1    HM359007    ADI48314.1    MH042022    AXJ21597.1    HM046614    ADK55521.1    AGBW02009356    OWR51030.1    PCG72390.1    PZC74790.1    KQ459597    KPI95180.1    BABH01035507    AB195973    BAD74198.1    PCG75724.1    AB251897    BAF03557.1    KP843907    AKS40086.1    DQ063589    AAZ14790.1    DQ063590    AAZ14791.1    KU522479    APX61065.1   
Pfam
PF00011   HSP20
Interpro
IPR008978   HSP20-like_chaperone        + More
IPR001436   Alpha-crystallin/HSP       
IPR002068   A-crystallin/Hsp20_dom       
IPR036116   FN3_sf       
IPR003961   FN3_dom       
SUPFAM
SSF49764   SSF49764        + More
SSF49265   SSF49265       
Gene 3D
PDB
3J07     E-value=3.70095e-27,     Score=297

Ontologies

Topology

Length:
178
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01287
Exp number, first 60 AAs:
0.01287
Total prob of N-in:
0.00690
outside
1  -  178
 
 

Population Genetic Test Statistics

Pi
190.312533
Theta
158.052509
Tajima's D
0.641798
CLR
162.243302
CSRT
0.55807209639518
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
31250652 SPLIVFFRLAKTEPPTNLEQAENIIKEHEAFLTTMEANDDKINSVVQFANRLVEERHFDADKIQRKAENIEARRNANREKALNLMEKLQDQLQLHQFLQDCDELGEWVQEKNVTAQDDTYRSAKTIHSKWTRHQAFEAEIAANKERLFAVQNAAEELMKQKPEFVEVISPKMHELQDQFENLQTTTKEKGERLFDANREV 100.00 5e-135
31250652 YALPENCNPDTVESR 100.00 4e-06
31250652 LSSDGVLTVIAPR 100.00 6e-05
26822097 SYNISEGAIETIMK 100.00 9e-04
26280517 EIISTPIIDDMIR 100.00 9e-04
25044914 EIKEPTAEVESNETK 100.00 9e-04
28467696 EIKEAISIPAAASFK 100.00 9e-04
26280517 HDVTIPHGTIFSPNYPAAYPAR 100.00 0.005
25044914 EIKDQSEGTQDAENK 100.00 0.005
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