Gene

KWMTBOMO16124

Pre Gene Modal

BGIBMGA008012

Annotation

PREDICTED:_tigger_transposable_element-derived_protein_4-like_[Papilio_machaon]

Location

Bomo_Chr27(+):9739106-9740514      View in EpiBrowser

Full name

Tigger transposable element-derived protein 4      

Location in the cell

Nuclear   Reliability : 3.413

CDS

ATGAAACGAGCCAGAACAACGAAGCACACGAATATTGAGGAAGCTTTGTTGAAGTGGTTTAAATGTCAAAGGGCTAATAATGTGCCAATAAACGGACCGATTCTTCAAGAAAAAGCTAACGATTTTGCTCAACGTTTTGGCGAAGATTTTGTTTGCTCGTCTAGTTGGATCCAACGTTTCCGGGCTCGGCACGGTATTATCGGCGGGAAAATGAGTGGTGAAGCTGCCAGTGTTGATAAGGATACTGTAGAAGAATGGATAACGCAAAAGTGGCCTACATTATTCGAAGGCTACGGACCAGATGAAATTTTTAACGCAGACGAAACTGGACTTTTTTACAATATGACACCGGACAAGACTTTAAAGTTCAAAGGAGAGAATTGTTCGGGAGGAAAAATGTCTAAGACAAGATTAACGATCATGGTTGCAGCAAATATGACAGGATCCTCTAAAAGAAAGCTTTTAGTTATTGGCAAATCTAAGAAACCAAGATGCTTTAAAAACATACACTCACTGCCGGTAACGTATGAAAACAATGTGAAGTCATGGATGACATCGGACATTTTTGAGAGATGGTTAAGAAACTGGGACGCTGAATTGAAAGGAAACAAACAGAAAGTTCTACTTTTGGTTGATAACTGTCCTGCTCATCCGGCTGTTACTAATCTAAAATGCATTAAACTTGTGTTCTTACCACCAAATGTTACATCTGTATTGCAACTAATGGAGCAAGGTGTCATAAGATGTTTAAAATCTCACTATAGAAGACTGCAAGTGTTAAAGTTAATACAAAATCTTGACAGTAGCGAACAAAAAAGGTTTACGGTTCTTGATGCCATCTTAATGATATCAGAAGCATGGAAAAACGTTTCACAAAACACTATAGCTAACTGCTTTAAGCATGCTGGTTTTAAAGACCTCTTAACAATAACCTCAGATGATGTGACTGATGATGATGGAGAGGACAATATTTCTCTTGCTCAATTAGCCCAAAATGTACGACCTGCTTTATATACTACTGAAGCAGCAGAGTTCATTGATGTAGATAACTCTATTGCAATTTGCGCACGAGCTACGGAATATGATATTGTACGAGATGTTCAAGAGGAAGATGACGAACAGGAAGACTCTGAAGAACAATTTACTGTACCAACTTTGAATGATGGTATCAATGCTGTTAGTATATTAAGAAAGATTGTTCTTTTTAATGAACATTTCCACATCCACAGCAATTATGACGATACGTTAATTAAAATCCAACGTGAATTACAAAATATCTATGCACAACAGAAGTGTTCCAAACAGACCAAAATTAGAGATTTTATGCTTACAGAAAAATAA

Protein

MKRARTTKHTNIEEALLKWFKCQRANNVPINGPILQEKANDFAQRFGEDFVCSSSWIQRFRARHGIIGGKMSGEAASVDKDTVEEWITQKWPTLFEGYGPDEIFNADETGLFYNMTPDKTLKFKGENCSGGKMSKTRLTIMVAANMTGSSKRKLLVIGKSKKPRCFKNIHSLPVTYENNVKSWMTSDIFERWLRNWDAELKGNKQKVLLLVDNCPAHPAVTNLKCIKLVFLPPNVTSVLQLMEQGVIRCLKSHYRRLQVLKLIQNLDSSEQKRFTVLDAILMISEAWKNVSQNTIANCFKHAGFKDLLTITSDDVTDDDGEDNISLAQLAQNVRPALYTTEAAEFIDVDNSIAICARATEYDIVRDVQEEDDEQEDSEEQFTVPTLNDGINAVSILRKIVLFNEHFHIHSNYDDTLIKIQRELQNIYAQQKCSKQTKIRDFMLTEK

Similarity

Belongs to the tigger transposable element derived protein family.

Keywords

Complete proteome   DNA-binding   Nucleus   Polymorphism   Reference proteome  

Feature

chain  Tigger transposable element-derived protein 4
sequence variant  In dbSNP:rs34432931.

Uniprot

H9JER5   H9JRJ8   V5GY20   A0A2H1VZ78   A0A1W4VG27   A0A0Q9XFU2   + More
A0A1Y1KNY0   A0A2S2NVD0   A0A1E1XPV2   A0A2J7PTM7   A0A2R5L8Q6   A0A1E1XTJ5   X1WUV9   A0A151NEE7   A0A2L2YIB8   A0A131XG10   A0A023FJP7   A0A087U5W6   A0A087UK97   A0A1E1X4M9   L7MLD5   A0A087UJS2   A0A3Q0GP10   L7MMS1   A0A023GKV9   A0A2Y9DPY4   A0A1U7RJI3   A0A2R5LGG9   A0A087U1U6   L7MLS7   A0A2U3W395   A0A1D2M783   A0A0B7BST1   A0A1E1XRR1   F7HQK9   E2R100   U6CPF6   A0A3Q7P972   M3Z8F2   A0A2K5C1T7   J9LIK9   G1MLG7   A0A3Q7U3A8   D2GXS4   A0A2Y9HZ54   A0A3P4S0X8   A0A3Q7WY04   A0A2Y9KLY4   S9XPQ8   A0A384BN56   G3W0T3   A0A147BJ44   H0WRQ3   A0A2K6SCY7   A0A091SZA7   L8HVP8   A0A1U7TKK1   F7AYM3   A0A087V7Q2   L7MKS4   Q8IY51   A0A2U3X756   A0A2K6JVL4   A0A2K6NL06   W5Q0B7  

Pubmed

19121390    17994087    28004739    29209593    22293439    26561354    + More
28049606    28503490    25576852    27289101    16341006    20010809    23149746    24813606    21709235    29652888    22751099    19892987    15815621    15489334    14702039    25362486    20809919   

EMBL

BABH01023425    BABH01031799    GALX01001744    JAB66722.1    ODYU01005364    SOQ46128.1    + More
CH933812    KRG07157.1    GEZM01080219    GEZM01080218    JAV62288.1    GGMR01008478    MBY21097.1    GFAA01002355    JAU01080.1    NEVH01021236    PNF19682.1    GGLE01001733    MBY05859.1    GFAA01000830    JAU02605.1    ABLF02034653    AKHW03003207    KYO35178.1    IAAA01026926    LAA07859.1    GEFH01002147    JAP66434.1    GBBK01002531    JAC21951.1    KK118338    KFM72755.1    KK120216    KFM77786.1    GFAC01005197    JAT93991.1    GACK01000229    JAA64805.1    KK120140    KFM77611.1    GACK01000230    JAA64804.1    GBBM01000897    JAC34521.1    GGLE01004497    MBY08623.1    KK117753    KFM71335.1    GACK01000074    JAA64960.1    LJIJ01003184    ODM88784.1    HACG01049168    HACG01049169    HACG01049170    HACG01049171    CEK96033.1    CEK96034.1    CEK96035.1    CEK96036.1    GFAA01001803    JAU01632.1    AAEX03010049    HAAF01000614    CCP72440.1    AEYP01045400    ABLF02042388    ACTA01040196    GL192370    EFB26546.1    CYRY02045419    VCX40834.1    KB017510    EPY77151.1    AEFK01215205    GEGO01004591    JAR90813.1    AAQR03075137    KK492952    KFQ64083.1    JH882892    ELR47958.1    KL483028    KFO08644.1    GACK01000607    JAA64427.1    AC106882    BC037869    AK058054    AMGL01037157   

Proteomes

UP000005204    UP000192221    UP000009192    UP000235965    UP000007819    UP000050525    + More
UP000054359    UP000189705    UP000248480    UP000245340    UP000094527    UP000008225    UP000002254    UP000286641    UP000000715    UP000233020    UP000008912    UP000286640    UP000248481    UP000286642    UP000248482    UP000261680    UP000291021    UP000007648    UP000005225    UP000233220    UP000189704    UP000002281    UP000005640    UP000245341    UP000233180    UP000233200    UP000002356   

PRIDE

H9JER5    H9JRJ8    Q8IY51   

Pfam

PF03221   HTH_Tnp_Tc5        + More
PF03184   DDE_1
PF04218   CENP-B_N
PF01388   ARID

Interpro

IPR004875   DDE_SF_endonuclease_dom        + More
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR036431   ARID_dom_sf       
IPR001606   ARID_dom       
IPR036388   WH-like_DNA-bd_sf       

SUPFAM

SSF46689   SSF46689        + More
SSF46774   SSF46774       

Gene 3D

1.10.150.60     1.10.10.10    

ProteinModelPortal

H9JER5   H9JRJ8   V5GY20   A0A2H1VZ78   A0A1W4VG27   A0A0Q9XFU2   + More
A0A1Y1KNY0   A0A2S2NVD0   A0A1E1XPV2   A0A2J7PTM7   A0A2R5L8Q6   A0A1E1XTJ5   X1WUV9   A0A151NEE7   A0A2L2YIB8   A0A131XG10   A0A023FJP7   A0A087U5W6   A0A087UK97   A0A1E1X4M9   L7MLD5   A0A087UJS2   A0A3Q0GP10   L7MMS1   A0A023GKV9   A0A2Y9DPY4   A0A1U7RJI3   A0A2R5LGG9   A0A087U1U6   L7MLS7   A0A2U3W395   A0A1D2M783   A0A0B7BST1   A0A1E1XRR1   F7HQK9   E2R100   U6CPF6   A0A3Q7P972   M3Z8F2   A0A2K5C1T7   J9LIK9   G1MLG7   A0A3Q7U3A8   D2GXS4   A0A2Y9HZ54   A0A3P4S0X8   A0A3Q7WY04   A0A2Y9KLY4   S9XPQ8   A0A384BN56   G3W0T3   A0A147BJ44   H0WRQ3   A0A2K6SCY7   A0A091SZA7   L8HVP8   A0A1U7TKK1   F7AYM3   A0A087V7Q2   L7MKS4   Q8IY51   A0A2U3X756   A0A2K6JVL4   A0A2K6NL06   W5Q0B7  

PDB

1HLV     E-value=1.30126e-05,     Score=117

KEGG

NA   

GO

GO:0005634   GO:0003677   GO:0003676   GO:0006470   GO:0016311   GO:0016791   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

Subcellular location

Nucleus  

Length:

446

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02019

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10975

outside

1  -  446

 

 

Pi

27.752561

Theta

38.56581

Tajima's D

-1.002237

CLR

40.641811

CSRT

0.139143042847858

Interpretation

Uncertain