Gene

KWMTBOMO16117

Annotation

PREDICTED:_uncharacterized_protein_LOC105389553_[Plutella_xylostella]

Location

Bomo_Chr27(+):9556296-9557743      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.16 Nuclear   Reliability : 1.456

CDS

ATGCATCGCGAGAACGGCCAAGCCGAACGCTACTGCAGAACCGTTCTTAATTTACTACGAGTCGAAGTTGGTAGCAAAGGCTCCCAATGGTCTGATGTGCTGTGGAAAGCACAGCTTACTTTAAACATCACGAAGCAGATGACCACGCAGACTTCACCACTTCAGCTCCTTATTGGTATAGAGGCAGCTACTCCAGTCATTAGAGATCTGGTGCGCGATGTTGCGTTAGACGCCAATTCTAACCGTGAAGCTTTACTAACCCTCAGTCGACAGAAAGCATCCGAATTACTATTGGACAATCAACGGCGACAAGACGAACAGGTCAACGAACGTCGGCGCCAGCCCACAACGTTTGCTGTGGGTGACTTCGTGTTCGTCAACAAGGCAACACAGTCAACGGGCAAACTCGACTCCGGGATGCGCGGCCCTTACAAGGTCTTGCGCACGCTTCCACATCACCGTTACGAGCTGGAGCTTCTCGCCGGTTCCTACGGCAAAAAGACACAAGCGGCCGCCCAATATATGGTGTTGTGGCGCGGCGAGTGGACCCCGGAGACATGCAGCGCTTTCTTTGAAACTGAGGGTGAACTTATTGATGCGACTTCTGACGTAGCTGGAAGAGGCCTTCCTCTATTGAGAGATGAGGCGGTCGAGGACGCCTCGCCATCAGGAACGGCCGTATTACCGAGTCCAGGCAACCCCCGACCGGAAACACTATAA

Protein

MHRENGQAERYCRTVLNLLRVEVGSKGSQWSDVLWKAQLTLNITKQMTTQTSPLQLLIGIEAATPVIRDLVRDVALDANSNREALLTLSRQKASELLLDNQRRQDEQVNERRRQPTTFAVGDFVFVNKATQSTGKLDSGMRGPYKVLRTLPHHRYELELLAGSYGKKTQAAAQYMVLWRGEWTPETCSAFFETEGELIDATSDVAGRGLPLLRDEAVEDASPSGTAVLPSPGNPRPETL

Uniprot

A0A3S2PH68   A0A194R3M4   A0A0A9X1Z8   A0A146M2J2   A0A0A1XC90   A0A0A1XFE9   + More
A0A0A1WXH9   A0A084VNH0   A0A0J7K890   A0A0J7K8L8   A0A0J7KFF1   A0A0K8U3Q1   A0A0A9WLN3   A0A0C9QX60   A0A0J7JZI0   A0A034VLR3   A0A2A4JMN7   A0A0J7MSH3   W8APB2   A0A1R1PJ63   A0A0J7KEC9   A0A034WRX5   A0A034WW03   A0A0J7NF11   A0A0J7KLK4   A0A2A4J7U9   A0A0J7KQN5   A0A034VKV9   W8C8Q1   A0A034WKE0   W8B0V9   W8ANK3   A0A182GLM7   A0A2R5LP11   A0A0J7K9X8   A0A164TTE6   A0A1Y1NEJ5   A0A0K8VWM3   V5GQL3   X1XM84   A0A034WVB0   A0A151RCB1   A0A182G9K0   A0A0P4VR68   A0A0A1XB16   A0A0K8SCT3   A0A1R1PN02   A0A023EYH9   A0A023EZG2   A0A0A1WNQ1  

Pubmed

26354079    25401762    26823975    25830018    24438588    25348373    + More
24495485    26483478    28004739    22057054    27129103    25474469   

EMBL

RSAL01000035    RVE51343.1    KQ460855    KPJ11840.1    GBHO01030786    JAG12818.1    + More
GDHC01004980    JAQ13649.1    GBXI01005730    JAD08562.1    GBXI01004632    JAD09660.1    GBXI01010986    JAD03306.1    ATLV01014752    KE524984    KFB39514.1    LBMM01011782    KMQ86633.1    LBMM01011790    KMQ86624.1    LBMM01008296    KMQ88999.1    GDHF01030992    JAI21322.1    GBHO01037839    JAG05765.1    GBYB01008369    JAG78136.1    LBMM01019746    KMQ83464.1    GAKP01016237    JAC42715.1    NWSH01001093    PCG72660.1    LBMM01019745    KMQ83465.1    GAMC01020207    JAB86348.1    LSSK01001748    LSSK01001018    OMH78870.1    OMH80988.1    LBMM01008871    KMQ88569.1    GAKP01001563    JAC57389.1    GAKP01000974    JAC57978.1    LBMM01005919    KMQ91095.1    KMQ91096.1    NWSH01002797    PCG67520.1    LBMM01004258    KMQ92653.1    GAKP01016235    JAC42717.1    GAMC01007326    JAB99229.1    GAKP01004347    JAC54605.1    GAMC01015907    JAB90648.1    GAMC01016175    JAB90380.1    JXUM01072364    KQ562717    KXJ75259.1    GGLE01007069    MBY11195.1    LBMM01010976    KMQ87102.1    LRGB01001727    KZS10738.1    GEZM01005427    JAV96179.1    GDHF01009055    JAI43259.1    GALX01004559    JAB63907.1    ABLF02004526    ABLF02054969    GAKP01000690    JAC58262.1    KQ483848    KYP40258.1    JXUM01049447    KQ561604    KXJ78025.1    GDKW01003992    JAI52603.1    GBXI01005773    JAD08519.1    GBRD01014907    JAG50919.1    LSSK01000685    OMH82338.1    GBBI01004550    JAC14162.1    GBBI01004551    JAC14161.1    GBXI01014244    JAD00048.1   

Proteomes

UP000283053    UP000053240    UP000030765    UP000036403    UP000218220    UP000069940    + More
UP000249989    UP000076858    UP000007819    UP000075243   

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF00078   RVT_1
PF00077   RVP
PF17919   RT_RNaseH_2
PF02037   SAP
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF12384   Peptidase_A2B
PF03732   Retrotrans_gag

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR001878   Znf_CCHC       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR041577   RT_RNaseH_2       
IPR000477   RT_dom       
IPR018061   Retropepsins       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR041373   RT_RNaseH       
IPR024650   Peptidase_A2B       
IPR005162   Retrotrans_gag_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       
SSF68906   SSF68906       

Gene 3D

3.30.420.10     2.40.70.10     1.10.720.30    

ProteinModelPortal

A0A3S2PH68   A0A194R3M4   A0A0A9X1Z8   A0A146M2J2   A0A0A1XC90   A0A0A1XFE9   + More
A0A0A1WXH9   A0A084VNH0   A0A0J7K890   A0A0J7K8L8   A0A0J7KFF1   A0A0K8U3Q1   A0A0A9WLN3   A0A0C9QX60   A0A0J7JZI0   A0A034VLR3   A0A2A4JMN7   A0A0J7MSH3   W8APB2   A0A1R1PJ63   A0A0J7KEC9   A0A034WRX5   A0A034WW03   A0A0J7NF11   A0A0J7KLK4   A0A2A4J7U9   A0A0J7KQN5   A0A034VKV9   W8C8Q1   A0A034WKE0   W8B0V9   W8ANK3   A0A182GLM7   A0A2R5LP11   A0A0J7K9X8   A0A164TTE6   A0A1Y1NEJ5   A0A0K8VWM3   V5GQL3   X1XM84   A0A034WVB0   A0A151RCB1   A0A182G9K0   A0A0P4VR68   A0A0A1XB16   A0A0K8SCT3   A0A1R1PN02   A0A023EYH9   A0A023EZG2   A0A0A1WNQ1  

PDB

3DLR     E-value=0.027415,     Score=85

KEGG

NA   

GO

GO:0003676   GO:0015074   GO:0004190   GO:0008270   GO:0022857   GO:0005215   GO:0022891   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

Length:

239

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00554999999999999

Exp number, first 60 AAs:

0.00245

Total prob of N-in:

0.16695

outside

1  -  239

 

 

Pi

12.540942

Theta

1.537627

Tajima's D

0

CLR

129.728932

CSRT

0.417129143542823

Interpretation

Uncertain