SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16115
Pre Gene Modal
BGIBMGA004538
Annotation
PREDICTED:_sugar_transporter_ERD6-like_6_isoform_X2_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.783
 

Sequence

CDS
ATGTCTGGTACTGGACGATGGACCACGCCGTTCTTGAAACAGTGCTTTGCGGTATCGAGTGTGGCTCTCAACGTAATGTCATACGGTATGGTTTTCGGATTTAACGCATCACTGTTCTCAGACTTGAGGAAGAGTCGAGAGATACCCTTGGACAGGGATTCAGAGTCATGGTTGGCATCACTGATCGGAATAACTACACTAATAGGATGTTTCTCCACCTCAATAATCATAGACACAATTGGCAGAAGACCTGCACTTCTCATCAGCTCAACCCTCATGGTCAGCGGTTGGATAGGATTCAGTTTGGCCTCATCATTTCCTGCCTTACTATTAGCAAAGATATTTCAAGGAATGTCTATCGGTCTTGGGACCACAATGGGCGGTATTTTAATTGCAGAATACAGCAGTCCCAAATACCGTGGATCTCTTATAGCAACAATACCTGCTGCGTTCCTGGTCGTGTTTTATTATATGGTACCGGAAACTAAAGATAAGACTCTTCAAGAAATAGAAGATAAACTCAGAGGATATTCTATAGCTCGTCGTGATGAAACTTTGAAATTAAAAGACGCTGAACTATGA
Protein
MSGTGRWTTPFLKQCFAVSSVALNVMSYGMVFGFNASLFSDLRKSREIPLDRDSESWLASLIGITTLIGCFSTSIIIDTIGRRPALLISSTLMVSGWIGFSLASSFPALLLAKIFQGMSIGLGTTMGGILIAEYSSPKYRGSLIATIPAAFLVVFYYMVPETKDKTLQEIEDKLRGYSIARRDETLKLKDAEL

Summary

Similarity
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
EMBL
BABH01035544    BABH01035538    BABH01035539    RSAL01000045    RVE50592.1    NWSH01000008    + More
PCG80953.1    KZ150249    PZC71836.1    KQ460077    KPJ17881.1    BABH01025717    RVE50589.1    ODYU01011356    SOQ57052.1    BABH01025731    NWSH01000704    PCG74682.1    KJ439227    KZ150491    AHX25878.1    PZC70688.1    AGBW02010956    OWR47467.1    ODYU01007122    SOQ49615.1    KQ458671    KPJ05558.1    KPJ17885.1    PCG74683.1    BABH01035527    BABH01035528    BABH01035529    KPJ17891.1    ODYU01008354    SOQ51875.1    NWSH01000578    PCG75536.1    NWSH01001042    PCG72950.1    SOQ49614.1    PZC71835.1    KPJ05554.1    KQ460126    KPJ17589.1    KPJ05573.1    AGBW02002687    OWR55626.1    AGBW02009614    OWR50324.1    KPJ05563.1    BABH01038850    KPJ05559.1    PCG74684.1    KPJ05555.1    KQ458981    KPJ04505.1    RSAL01000181    RVE44925.1    KPJ17884.1    RVE44926.1    GFDF01009026    JAV05058.1    GFDF01009027    JAV05057.1    NWSH01002771    PCG67556.1    BABH01025723    KQ459158    KPJ03590.1    KPJ05572.1    PZC70686.1    PZC71837.1    BABH01038877    BABH01038878    BABH01038879    BABH01038880    BABH01038881    AJWK01032461    AB901078    BAQ02378.1    KZ150133    PZC73021.1    NWSH01000610    PCG75342.1    UFQT01001316    SSX30005.1    UFQT01000224    SSX22028.1    NNAY01002414    OXU21332.1    ODYU01007347    SOQ50032.1   
Pfam
PF00083   Sugar_tr        + More
PF07690   MFS_1
Interpro
IPR005828   MFS_sugar_transport-like        + More
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR005829   Sugar_transporter_CS       
IPR003663   Sugar/inositol_transpt       
IPR011701   MFS       
SUPFAM
SSF103473   SSF103473       

Ontologies

Topology

Length:
193
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
102.23035
Exp number, first 60 AAs:
25.66699
Total prob of N-in:
0.67316
POSSIBLE N-term signal
sequence
outside
1  -  14
TMhelix
15  -  37
inside
38  -  57
TMhelix
58  -  80
outside
81  -  84
TMhelix
85  -  102
inside
103  -  108
TMhelix
109  -  131
outside
132  -  140
TMhelix
141  -  160
inside
161  -  193
 
 

Population Genetic Test Statistics

Pi
216.869053
Theta
139.679711
Tajima's D
1.303097
CLR
0.147815
CSRT
0.735713214339283
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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