Silkworm Genome Informatics Database

Gene

KWMTBOMO16113

Annotation

PREDICTED:_facilitated_trehalose_transporter_Tret1-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr27(+):9481756-9485365 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.19

CDS

ATGCCTCGTCGCAGACAATGGATGACGCCATTTATAAATCAGTGTTTCGCCACATCAGGTGTGACCCTCAATATGTTGACACACGGCTTCATGTACGGATTCAATACGGGACTGTTCGCACAGTTGAGGAAGACTAAAGAAATACAGTTGGATTTGGAGTTAGAGTCTTGGCTGGCGGCTGGATCTGCTTCTTTACCTAATATTGTGGCCGGAGAAATATTCCCTTTGGCCAATAGAAGCGCTTGTGGGGTGGTTTGTAACATAATGGCTTCATTATACACGTTCATCAATATCAAAAACATTCCTTATATCTTTTCTAAAGTTGGTGTCAGCGGAGTTTTCTTTATGAACGCCGCCCTGCTTTCATATGCCCTCGTCATCACAATGTACATGTTACCGGAAACAAAAGATAAAACGCTCTTAGAAATAGAAATCATATTAAGAGGGTGTCCTATTGCTGATGATGATGAAACAATGATTAATCTGAAAAAACATAATGAGACAAATTTCTGA

Protein

MPRRRQWMTPFINQCFATSGVTLNMLTHGFMYGFNTGLFAQLRKTKEIQLDLELESWLAAGSASLPNIVAGEIFPLANRSACGVVCNIMASLYTFINIKNIPYIFSKVGVSGVFFMNAALLSYALVITMYMLPETKDKTLLEIEIILRGCPIADDDETMINLKKHNETNF

Similarity

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.

Uniprot

H9J4T4 E0X905 H9J4T7 H9J4S0 A0A2W1BG84 A0A2A4KAY2 + More
A0A0L7L8D8 A0A2W1BBH7 A0A0L7KZ73 A0A0N1IG19 A0A194QJ30 A0A2W1BFI0

Pubmed

19121390 28756777 26227816 26354079

EMBL

BABH01035465 GQ871755 ADM86146.1 BABH01035469 BABH01035538 BABH01035539 + More
KZ150249 PZC71836.1 NWSH01000008 PCG80953.1 JTDY01002352 KOB71610.1 KZ150491 PZC70687.1 JTDY01004123 KOB68563.1 KQ460077 KPJ17891.1 KQ458671 KPJ05563.1 KZ150133 PZC73021.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000053240 UP000053268

PRIDE

H9J4T4 E0X905 H9J4T7 H9J4S0

Pfam

PF00083 Sugar_tr

Interpro

IPR005828   MFS_sugar_transport-like        + More
IPR036259   MFS_trans_sf
IPR005829   Sugar_transporter_CS
IPR020846   MFS_dom
IPR003663   Sugar/inositol_transpt

SUPFAM

SSF103473 SSF103473

CDD

cd06174 MFS

ProteinModelPortal

H9J4T4 E0X905 H9J4T7 H9J4S0 A0A2W1BG84 A0A2A4KAY2 + More
A0A0L7L8D8 A0A2W1BBH7 A0A0L7KZ73 A0A0N1IG19 A0A194QJ30 A0A2W1BFI0

PDB

4LDS E-value=0.0221953, Score=83

KEGG

101736616 no KO assigned | (RefSeq) monosaccharide-sensing protein 1-like

GO

GO:0022857 GO:0016021 GO:0008643 GO:0022891 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259 GO:0055085

Length:

170

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

63.28758

Exp number, first 60 AAs:

20.48888

Total prob of N-in:

0.94973

POSSIBLE N-term signal

sequence

inside

1 - 19

TMhelix

20 - 42

outside

43 - 75

TMhelix

76 - 98

inside

99 - 109

TMhelix

110 - 132

outside

133 - 170

Pi

184.692682

Theta

141.79915

Tajima's D

0.554255

CLR

0.045315

CSRT

0.525573721313934

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree