SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16112
Pre Gene Modal
BGIBMGA004506
Annotation
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.948
 

Sequence

CDS
ATGGCCAGCCACGGACTGGTGATGGGTTTCTCGGCCATCTTAGTGCCGCAACTCCAGCAGCCCGATTCGCCGATACCCGTTGACTACTCCACAGGATCGTGGATCGCTTCGATCCCCGGCTTCGCTTTGGTCGTCGGAAACTTCATCGTCCCCACAATCATGGCTAAATACGGACGACGAACAGCAAATCTCATCAGCATAGCTCCCATGATCACCGGCTGGTTCAATATATTGCTGGCAAGAAATGTTTCTGCCTTACTCATCGCAAGATTCAATCAAGGCATAGCTATGGGCATGAGCGCTTCCCTGGGACCCGTCCTAATCGGAGAATACACCAGCCCCAATAATCGAGGTGCATTCCTGACGAGTATCTCATTGACGATCGCCACAGGAGTTCTGGCGGTCCACACTATGGGCTCGTATTTGTCATGGCAAACGACTGCCTTGGTTTGCGCTTTCATTGCCTTTGTGGATCTTCTGATCGTGATCTACTCACCGGAATCGCCGAGTTGGTTGGCCGACCAAGGACGCTATGACGAATGCCGGAAAGTCTTCAGATGGTTGAGAAGCGAAGAAGAGGAAGAGGAATTGGAGAGAATGATAGAAGCGGCCATAGTCGTAAGAGAGTCGAAAGCGGACGTCAATCTTTCAGAATCATTCTTAAATAAAGTCAAAAGAAACGTTTCACACTTCTGCTCAACGATCATGAAAAGAGAGTTTTACAGGCCTATTTTTATCATGATGCACATTTACACGTTAGGACAATGGGCTGGAGCTAACATCCTAGCTGCTTATACTGTAGACATATTCACGGCTGTCATAGGAGAAGACATAAACATACCTTTGTTAATAATAACGCTGGACGCCCAGAGAATCATTTCGAACGCCGCAGCCATTTTTGTCATTAAGAAAATTAAGAGACGGACAATGCTGTTTTCGACTGTTACCTTAAATTTGTTCGCTTTTATCTCCACCGCTGCTTATACGTATTGTAAAGGGCGCGGTTTGTTACCTTTCGACCATCCCGTCATAGGTATAGCTCTGATACACATCCACATGTTCACAATAGCGACGGGCACAGTCCCATTACCCTTCATTATAGCAGGAGAATTGTTCCCTCTGGAGTTCAGGAGTCTAGCCGGTGGTATAAGCGTACTGTTCTTATCAACGAATCTATTTATAGCCGTTAAAACGTTTTCACTACTATTAAAGTCCATCGGTATACACGGTGCGTATCTGATATATGCTGGCGTCGTAGCTTATTGCTTGGTTATAGCTGGCTTCTTCCTGCCAGAAACGAAAGACCGGACGCTACAAGAAATAGAAGACGAATTCCGCGGTAGACCGTTAACTGTTGAGGAGTTGAAATCCACTCAGTCGTTGACCTCGTGGAAGCTAAGAAGCCAGGACAGACGTTGCAGCAGTCCTGTTGTATAG
Protein
MASHGLVMGFSAILVPQLQQPDSPIPVDYSTGSWIASIPGFALVVGNFIVPTIMAKYGRRTANLISIAPMITGWFNILLARNVSALLIARFNQGIAMGMSASLGPVLIGEYTSPNNRGAFLTSISLTIATGVLAVHTMGSYLSWQTTALVCAFIAFVDLLIVIYSPESPSWLADQGRYDECRKVFRWLRSEEEEEELERMIEAAIVVRESKADVNLSESFLNKVKRNVSHFCSTIMKREFYRPIFIMMHIYTLGQWAGANILAAYTVDIFTAVIGEDINIPLLIITLDAQRIISNAAAIFVIKKIKRRTMLFSTVTLNLFAFISTAAYTYCKGRGLLPFDHPVIGIALIHIHMFTIATGTVPLPFIIAGELFPLEFRSLAGGISVLFLSTNLFIAVKTFSLLLKSIGIHGAYLIYAGVVAYCLVIAGFFLPETKDRTLQEIEDEFRGRPLTVEELKSTQSLTSWKLRSQDRRCSSPVV

Summary

Similarity
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
EMBL
BABH01035548    KQ460077    KPJ17887.1    KQ458671    KPJ05561.1    KZ150249    + More
PZC71836.1    ODYU01011356    SOQ57052.1    NWSH01000008    PCG80953.1    AGBW02008317    OWR53759.1    AGBW02010956    OWR47467.1    RSAL01000045    RVE50592.1    BABH01025733    PCG80949.1    JTDY01002352    KOB71610.1    PZC71838.1    JTDY01000342    KOB77618.1    KPJ05558.1    ODYU01000118    SOQ34347.1    BABH01035527    BABH01035528    BABH01035529    BABH01025731    ODYU01007122    SOQ49615.1    RVE50589.1    ODYU01008354    SOQ51875.1    NWSH01000704    PCG74682.1    KJ439227    KZ150491    AHX25878.1    PZC70688.1    PZC71835.1    AGBW02009614    OWR50324.1    NWSH01000578    PCG75536.1    BABH01025717    ODYU01007347    SOQ50032.1    NWSH01002771    PCG67556.1    JTDY01004123    KOB68566.1    PCG74683.1    BABH01038881    KZ150133    PZC73021.1    RSAL01000181    RVE44925.1    KPJ17880.1    KPJ05573.1    KOB71609.1    PCG75537.1    KPJ05554.1    KPJ17881.1    KQ458981    KPJ04505.1    PCG74684.1    SOQ49614.1    AGBW02009205    OWR51384.1    KPJ17884.1    KPJ05555.1    BABH01035543    SOQ49613.1    KPJ05583.1    FJ373021    ACQ66002.1    GQ871755    ADM86146.1    BABH01035538    BABH01035539    BABH01035469    BABH01025720    KPJ05559.1    BABH01035544    KPJ17891.1    NWSH01001042    PCG72950.1    PZC70687.1    KPJ05563.1    OWR50323.1    KPJ05572.1    RVE44926.1    PCG67555.1    JTDY01000230    KOB78170.1    ODYU01012470    SOQ58795.1    BABH01038877    BABH01038878    BABH01038879    BABH01038880    KQ460126    KPJ17588.1    GQ871756    ADM86147.1    BABH01025724    KPJ05557.1    NWSH01006268    PCG63546.1    KB632225    ERL90272.1    KQ459299    KPJ01871.1    ODYU01009098    SOQ53272.1    BABH01025723    KPJ17883.1    KPJ05560.1    AGBW02013662    OWR43027.1    KQ460761    KPJ12541.1    PCG80950.1    JTDY01002470    KOB71349.1    PCG75535.1    ODYU01009373    SOQ53753.1    ODYU01001065    SOQ36788.1    PZC71837.1    UFQT01001016    SSX28504.1    SOQ51878.1    PZC71834.1    BABH01018801    RVE50591.1    ODYU01011726    SOQ57638.1    JTDY01008796    KOB64392.1    ATLV01010625    KE524589    KFB35580.1    BABH01000587   
Pfam
PF00083   Sugar_tr
Interpro
IPR005828   MFS_sugar_transport-like        + More
IPR003663   Sugar/inositol_transpt       
IPR020846   MFS_dom       
IPR036259   MFS_trans_sf       
IPR005829   Sugar_transporter_CS       
SUPFAM
SSF103473   SSF103473       
PDB
4LDS     E-value=6.05085e-21,     Score=249

Ontologies

Topology

Length:
478
Number of predicted TMHs:
11
Exp number of AAs in TMHs:
230.69776
Exp number, first 60 AAs:
21.30929
Total prob of N-in:
0.02707
POSSIBLE N-term signal
sequence
outside
1  -  32
TMhelix
33  -  55
inside
56  -  61
TMhelix
62  -  84
outside
85  -  93
TMhelix
94  -  111
inside
112  -  117
TMhelix
118  -  140
outside
141  -  143
TMhelix
144  -  166
inside
167  -  242
TMhelix
243  -  265
outside
266  -  279
TMhelix
280  -  302
inside
303  -  308
TMhelix
309  -  331
outside
332  -  345
TMhelix
346  -  368
inside
369  -  380
TMhelix
381  -  403
outside
404  -  407
TMhelix
408  -  430
inside
431  -  478
 
 

Population Genetic Test Statistics

Pi
260.266191
Theta
174.2205
Tajima's D
2.129887
CLR
0.079681
CSRT
0.901354932253387
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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