SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16105
Pre Gene Modal
BGIBMGA004620
Annotation
PREDICTED:_histone_lysine_demethylase_PHF8-like_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.508
 

Sequence

CDS
ATGCAGGTGGTGGAAGAGCAGAAGACGGCCGCGCCGGCGCCGGTGCGTCGCTCCGAGCGGCCGGTCCGGCGCCGCGTGTCCAACACGTACGACTACGAGGACTGCGACCTGTACATCGACGAGACGCCGGCCCCGCGCCGGAGGAAGCCCTCCGGCAAGAACAAGACGCACTACAAACAGAGCCCCGCAAGTGTCCCGTCCAACAACAACTACAGGCAGGCCGCCATACCGGCGCCGGCCAACGGTATCGAGTCGCTGATACAGGCTTCGGTGCTGGCTGAAGAAGAGGAACAACCGGTTGACGCTACGGAGGACGTGGCGGTGGCCGGCATGCTGAGTATAAGCGAACAGCGCTACACGGCTCCCCGGACCTTCGGGCTGGCGGCGCATCGGGACCTCGCGCCCTCCACCTCGGCGCAGGACAGCAGTAGCAGTACACCGAGTGGCAGTAAAAGAACGCGGAAACCGGCTCCCAGCGCCGGCCATTCCGACGAGGACGTAGCCGAGGAACAAGACATCATCAAGGAGGTGCATCGAGACGAAGAGTACGTGTATCCATCGTTAGAAATGAGTTCGGATGAGGAAGACGACTGGGCGCTGTCGCGGCGGCGGCGAACCTCCAGGAAGGTCGATAAGACCAAGGGCGATAAGTAA
Protein
MQVVEEQKTAAPAPVRRSERPVRRRVSNTYDYEDCDLYIDETPAPRRRKPSGKNKTHYKQSPASVPSNNNYRQAAIPAPANGIESLIQASVLAEEEEQPVDATEDVAVAGMLSISEQRYTAPRTFGLAAHRDLAPSTSAQDSSSSTPSGSKRTRKPAPSAGHSDEDVAEEQDIIKEVHRDEEYVYPSLEMSSDEEDDWALSRRRRTSRKVDKTKGDK

Summary

Pfam
PF17811   JHD        + More
PF13621   Cupin_8
PF00628   PHD
PF02373   JmjC
Interpro
IPR003347   JmjC_dom        + More
IPR041667   Cupin_8       
IPR041070   JHD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
SUPFAM
SSF57903   SSF57903       
Gene 3D

Ontologies

Topology

Subcellular location
Nucleus  
Length:
217
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.23358
outside
1  -  217
 
 

Population Genetic Test Statistics

Pi
331.207675
Theta
157.88493
Tajima's D
3.251173
CLR
0.035796
CSRT
0.989450527473626
Interpretation
Uncertain
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