Gene

KWMTBOMO16100

Pre Gene Modal

BGIBMGA004624

Annotation

PREDICTED:_glycine_receptor_subunit_alpha-2-like_[Bombyx_mori]

Location

Bomo_Chr27(-):9159136-9164065      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.668

CDS

ATGGCGGCTGGAAAGCTGCTGTGGCTTACGACTGCTTTGCTACGACTTTGGCTGGGAGCTACCGACTTGTGTTACGCGCAGTCAACACTCCTGACCTTCCAAGACCTCCTTCCTGATGACCCCCGACTGTACGACAAGATGCGCCCTCCTAAGATCAACGACCAGCCCACCACCGTGAACTTCCACGTCACAGTAATGGGTTTAGACTCCATAGACGAGAACTCAATGACCTACGCTGCGGATATATTCTTCGCACAGACGTGGAAAGATTTTCGTCTACGCTTGCCAGAGAACATGACTTCTGAATATCGGCTGTTAGAAGTGGACTGGCTGAAACACATGTGGCGCCCAGACTCGTTCTTCAAGAACGCCAAGTCGGTGACGTTTCAGACGATGACCATACCGAACCACTACGTGTGGCTGTACAAGGACAAGACCATACTGTACATGGTGAAGCTGACGTTGAGGCTGTCTTGCGCTATGAACTTCCTCATTTACCCTCACGATACGCAGGAGTGCAAACTGCAGATGGAGAGTCAACGTCTCATTCCTGTCGTTTAA

Protein

MAAGKLLWLTTALLRLWLGATDLCYAQSTLLTFQDLLPDDPRLYDKMRPPKINDQPTTVNFHVTVMGLDSIDENSMTYAADIFFAQTWKDFRLRLPENMTSEYRLLEVDWLKHMWRPDSFFKNAKSVTFQTMTIPNHYVWLYKDKTILYMVKLTLRLSCAMNFLIYPHDTQECKLQMESQRLIPVV

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.
Belongs to the small heat shock protein (HSP20) family.

Uniprot

H9J534   A0A0N1PIU4   A0A212FPH0   A0A2H1W8M8   A0A194QJK2   A0A2W1BQQ4   + More
A0A2A4JHW4   A0A182QRK7   A0A182N5Z1   A0A182SUI5   A0A182JAP1   A0A084VRZ0   A0A182YJS5   A0A182R1K3   A0A1B6C9S2   A0A182FQJ1   A0A182K0E9   A0A182V8X8   B0X4C3   A0A182KM32   A0A182XBK0   Q7PYF3   A0A182I0D9   A0A182TY19   A0A182GB84   A0A182LT77   A0A1S4FVK1   A0A0J7KED0   A0A182VQZ5   Q16MN1   W5J3F3   A0A2J7QMJ8   A0A182PC39   F4X3L1   A0A158NZZ9   A0A1B0EU65   Q0GQR2   A0A139WID5   A0A1B1QGE4   A8DMU7   A0A310SGT2   E2BB08   A0A139WIM3   D3UAF0   A0A0C9R0N0   A0A195CQM4   A0A026VTT1   A0A336L4G9   K7IXV1   E2ACX9   A0A195BN15   A0A336L8K3   A0A2R7WEV2   A0A3L8DW80   E0VZ48   A0A0R1EFH3   A0A2S2NHC1   A0A2S2Q405   W8BRS1   A0A0K8UTP5   A0A034WD30   A0A1J1IF71   B4JT27   Q9VDU9   Q6TF31   Q6TF30   B3P093   B4QSV3   B4IHT1   B4PNJ0   A0A1W4W826   A0A0M5J2B8   B4M4Q2   Q293L8   B3LXQ8   A0A3B0JRW1   B4K4T7   B4NF02   A0A2A3ESK0   B4GLY0   A0A1B0FHR8   A1KYB5   A1KYB3   A0A1A9WRN1   A0A0L0CP68   A0A1I8MBK0   A0A1A9VMB7   A0A1A9ZPQ1   A1KYB4   A0A1I8NXM5   A0A0M9A1N8   A0A1A9YF81   A0A154NWV9   A0A1D2MVS3   N6TWP0   A0A151X4E1   A0A1B3P9B7   A0A0L7RHJ3   A0A3R7MHZ6   A0A195E076  

Pubmed

19121390    26354079    22118469    28756777    24438588    25244985    + More
20966253    12364791    14747013    17210077    26483478    17510324    20920257    23761445    21719571    21347285    16902773    18362917    19820115    17880682    20798317    20087392    24508170    20075255    30249741    20566863    17994087    17550304    24495485    25348373    10731132    12537568    12537572    12537573    12537574    11714703    11753412    16110336    17569856    17569867    26109357    26109356    16360945    15632085    23185243    18057021    26108605    25315136    27289101    23537049   

EMBL

BABH01038851    BABH01038852    KQ460077    KPJ17892.1    AGBW02002687    OWR55627.1    + More
ODYU01006917    SOQ49192.1    LC373508    KQ458671    BBD14178.1    KPJ05564.1    KZ150011    PZC75070.1    NWSH01001510    PCG71020.1    AXCN02000191    ATLV01015787    KE525036    KFB40734.1    GEDC01027061    JAS10237.1    DS232337    EDS40276.1    EDS40288.1    AAAB01008987    EAA01021.5    APCN01002072    JXUM01054215    JXUM01054216    KQ561810    KXJ77459.1    AXCM01007470    LBMM01008736    KMQ88662.1    CH477856    EAT35586.1    ADMH02002134    ETN58371.1    NEVH01013208    PNF29773.1    GL888624    EGI58808.1    ADTU01005179    ADTU01005180    AJWK01014063    AJWK01014064    AJWK01014065    AJWK01014066    DQ667187    ABG75739.1    KQ971338    KYB27770.1    KU532293    ANT80568.1    EF545124    ABU63602.1    KQ763877    OAD54660.1    GL446901    EFN87099.1    KYB27769.1    FJ851089    ACZ51421.1    GBYB01001545    JAG71312.1    KQ977394    KYN03006.1    KK107929    EZA47107.1    UFQS01001971    UFQT01001971    SSX12806.1    SSX32248.1    GL438602    EFN68709.1    KQ976440    KYM86574.1    SSX12805.1    SSX32247.1    KK854669    PTY17761.1    QOIP01000003    RLU24616.1    DS235849    EEB18654.1    CH892399    KRK05495.1    GGMR01003982    MBY16601.1    GGMS01003282    MBY72485.1    GAMC01006972    JAB99583.1    GDHF01022267    JAI30047.1    GAKP01006363    JAC52589.1    CVRI01000048    CRK98864.1    CH916373    EDV94917.1    AE014297    AF411340    AY049774    AF382403    AF435469    BT029033    AAF55691.1    AAL05873.1    AAL12210.1    AAL66188.1    AAL74413.1    ABJ16966.1    AY422812    AAR33080.1    AY422813    AAR33081.2    CH954181    EDV48467.1    CM000364    EDX12313.1    CH480840    EDW49448.1    CM000160    EDW96053.1    CP012526    ALC46948.1    CH940652    EDW59613.1    CM000070    EAL29196.1    KRT01375.1    CH902617    EDV41715.1    KPU79308.1    OUUW01000008    SPP83733.1    CH933806    EDW16090.1    KRG01921.1    CH964251    EDW83377.1    KZ288189    PBC34677.1    CH479185    EDW38554.1    CCAG010015445    AY672641    AAV91002.1    AY672639    AAV91000.1    JRES01000097    KNC34130.1    AY672640    AAV91001.1    KQ435794    KOX73989.1    KQ434775    KZC04083.1    LJIJ01000465    ODM97183.1    APGK01049251    KB741146    KB631697    ENN73700.1    ERL85444.1    KQ982557    KYQ55088.1    KU716103    AOG14387.1    KQ414591    KOC70268.1    QCYY01003768    ROT62203.1    KQ979955    KYN18545.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000218220    UP000075886    + More
UP000075884    UP000075901    UP000075880    UP000030765    UP000076408    UP000075900    UP000069272    UP000075881    UP000075903    UP000002320    UP000075882    UP000076407    UP000007062    UP000075840    UP000075902    UP000069940    UP000249989    UP000075883    UP000036403    UP000075920    UP000008820    UP000000673    UP000235965    UP000075885    UP000007755    UP000005205    UP000092461    UP000005203    UP000007266    UP000008237    UP000078542    UP000053097    UP000002358    UP000000311    UP000078540    UP000279307    UP000009046    UP000002282    UP000183832    UP000001070    UP000000803    UP000008711    UP000000304    UP000001292    UP000192221    UP000092553    UP000008792    UP000001819    UP000007801    UP000268350    UP000009192    UP000007798    UP000242457    UP000008744    UP000092444    UP000091820    UP000037069    UP000095301    UP000078200    UP000092445    UP000095300    UP000053105    UP000092443    UP000076502    UP000094527    UP000019118    UP000030742    UP000075809    UP000053825    UP000283509    UP000078492   

PRIDE

H9J534    Q9VDU9    A1KYB5    A1KYB3    A1KYB4   

Pfam

PF02932   Neur_chan_memb        + More
PF02931   Neur_chan_LBD
PF00053   Laminin_EGF
PF00055   Laminin_N
PF00011   HSP20
PF08839   CDT1
PF16679   CDT1_C
PF00334   NDK
PF01159   Ribosomal_L6e

Interpro

IPR006201   Neur_channel        + More
IPR018000   Neurotransmitter_ion_chnl_CS       
IPR036719   Neuro-gated_channel_TM_sf       
IPR036734   Neur_chan_lig-bd_sf       
IPR006029   Neurotrans-gated_channel_TM       
IPR006202   Neur_chan_lig-bd       
IPR006028   GABAA/Glycine_rcpt       
IPR013015   Laminin_IV_B       
IPR008211   Laminin_N       
IPR000742   EGF-like_dom       
IPR002049   Laminin_EGF       
IPR038684   Laminin_N_sf       
IPR002068   A-crystallin/Hsp20_dom       
IPR008978   HSP20-like_chaperone       
IPR034907   NDK-like_dom       
IPR036390   WH_DNA-bd_sf       
IPR032054   Cdt1_C       
IPR014939   CDT1_Gemini-bd-like       
IPR006602   Uncharacterised_DM10       
IPR036850   NDK-like_dom_sf       
IPR037993   NDPk7B       
IPR014722   Rib_L2_dom2       
IPR041997   KOW_RPL6       
IPR008991   Translation_prot_SH3-like_sf       
IPR000915   60S_ribosomal_L6E       

SUPFAM

SSF90112   SSF90112        + More
SSF63712   SSF63712       
SSF49764   SSF49764       
SSF46785   SSF46785       
SSF54919   SSF54919       
SSF50104   SSF50104       

Gene 3D

2.70.170.10     2.60.120.1490     2.60.40.790     3.30.70.141     2.30.30.30    

CDD

cd04412  NDPk7B
cd13156  KOW_RPL6

ProteinModelPortal

H9J534   A0A0N1PIU4   A0A212FPH0   A0A2H1W8M8   A0A194QJK2   A0A2W1BQQ4   + More
A0A2A4JHW4   A0A182QRK7   A0A182N5Z1   A0A182SUI5   A0A182JAP1   A0A084VRZ0   A0A182YJS5   A0A182R1K3   A0A1B6C9S2   A0A182FQJ1   A0A182K0E9   A0A182V8X8   B0X4C3   A0A182KM32   A0A182XBK0   Q7PYF3   A0A182I0D9   A0A182TY19   A0A182GB84   A0A182LT77   A0A1S4FVK1   A0A0J7KED0   A0A182VQZ5   Q16MN1   W5J3F3   A0A2J7QMJ8   A0A182PC39   F4X3L1   A0A158NZZ9   A0A1B0EU65   Q0GQR2   A0A139WID5   A0A1B1QGE4   A8DMU7   A0A310SGT2   E2BB08   A0A139WIM3   D3UAF0   A0A0C9R0N0   A0A195CQM4   A0A026VTT1   A0A336L4G9   K7IXV1   E2ACX9   A0A195BN15   A0A336L8K3   A0A2R7WEV2   A0A3L8DW80   E0VZ48   A0A0R1EFH3   A0A2S2NHC1   A0A2S2Q405   W8BRS1   A0A0K8UTP5   A0A034WD30   A0A1J1IF71   B4JT27   Q9VDU9   Q6TF31   Q6TF30   B3P093   B4QSV3   B4IHT1   B4PNJ0   A0A1W4W826   A0A0M5J2B8   B4M4Q2   Q293L8   B3LXQ8   A0A3B0JRW1   B4K4T7   B4NF02   A0A2A3ESK0   B4GLY0   A0A1B0FHR8   A1KYB5   A1KYB3   A0A1A9WRN1   A0A0L0CP68   A0A1I8MBK0   A0A1A9VMB7   A0A1A9ZPQ1   A1KYB4   A0A1I8NXM5   A0A0M9A1N8   A0A1A9YF81   A0A154NWV9   A0A1D2MVS3   N6TWP0   A0A151X4E1   A0A1B3P9B7   A0A0L7RHJ3   A0A3R7MHZ6   A0A195E076  

PDB

5VDH     E-value=9.26187e-18,     Score=217

KEGG

101747077    K05397 histamine-gated chloride channel | (RefSeq) glycine receptor subunit alpha-2-like

GO

GO:0004888   GO:0016021   GO:0005230   GO:0005886   GO:1902476   GO:0034220   GO:0007268   GO:0050877   GO:0005254   GO:0007165   GO:0042391   GO:0043005   GO:0005887   GO:0045202   GO:0006811   GO:0019182   GO:0019183   GO:0030534   GO:0043052   GO:0045472   GO:0009636   GO:0006821   GO:0005840   GO:0006412   GO:0003735   GO:0006810   GO:0016020   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259   GO:0005216  

PANTHER

PTHR18945  

SignalP

Position:   1 - 26,         Likelihood:  0.934315

 

 

Length:

186

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.82962

Exp number, first 60 AAs:

0.54589

Total prob of N-in:

0.06521

outside

1  -  186

 

 

Pi

218.1235

Theta

162.907612

Tajima's D

0.731503

CLR

1.449299

CSRT

0.579021048947553

Interpretation

Uncertain