SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16086
Pre Gene Modal
BGIBMGA004630
Annotation
PREDICTED:_protein_lethal(2)essential_for_life-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.226
 

Sequence

CDS
ATGGCGTTGTTACCATACTTATTGGATGATTTGCGTCCTCATCGCATTCGGGACCAGCTCTTCGGTATGGATTTGTCTCCGGACGATTTTCTAGCGGACATTATTGATCGGCCAATTGTGCGCATGAAATATGTACGTCCGTGGCGAAACTTGGCAGCTGCCGCTCGCGACGTCGGTTCGACCATCAAGACTGACAGAGACAAACTCCAGATCAATCTGGATGTTCAACATTTCACGCCTGAGGAGATATCTGTGAAGACTGCGGACGGGTACATCGTGATCGAAGGACAACACGAAGAGAAACAAGATGAGCATGGTTACGTTACGCGCCATTTCAAGCGTCGTTATGCTCTGCCTGAAGGATGTAAGCCGGAGACCGTGGAATCTAGACTGTCTTCGGATGGGGTGTTGACGGTTATAGCTCCGAAATCCTCTCAGAGTAAGGACGAGAGAGCTGTTCCTATTACCCACACCGGTCCGGTTAGAAGAAAGCAGCATGACGACGACCAGATCAATGGAAATGCGGAAGAAGAAACTAAATCGCCTCAGAAGAAACGAAAACGGTAA
Protein
MALLPYLLDDLRPHRIRDQLFGMDLSPDDFLADIIDRPIVRMKYVRPWRNLAAAARDVGSTIKTDRDKLQINLDVQHFTPEEISVKTADGYIVIEGQHEEKQDEHGYVTRHFKRRYALPEGCKPETVESRLSSDGVLTVIAPKSSQSKDERAVPITHTGPVRRKQHDDDQINGNAEEETKSPQKKRKR

Summary

Similarity
Belongs to the small heat shock protein (HSP20) family.
EMBL
BABH01042227    KZ150133    PZC73025.1    NWSH01000008    PCG80951.1    ODYU01009326    + More
SOQ53668.1    JTDY01002346    KOB71621.1    HQ219477    ADX96002.1    KX958471    ASQ43187.1    KP843904    AKS40083.1    AGBW02009356    OWR51030.1    KU522480    APX61066.1    KQ458671    KPJ05575.1    KY701309    ASK86231.1    RSAL01000078    RVE48718.1    MG816464    AYA93248.1    KJ461920    AHW45922.1    KQ460891    KPJ10838.1    KJ461916    AHW45918.1    AGBW02008361    OWR53574.1    KQ459460    KPJ00669.1    AGBW02011158    OWR47131.1    HQ219475    ADX96000.1    AGBW02012988    OWR44131.1    KQ460126    KPJ17594.1    DQ063591    AAZ14792.1    KX958479    ASQ43195.1    KP843906    AKS40085.1    AB195971    BAD74196.1    FJ602780    ACM24346.1    KU096844    AMY63177.1    KZ150055    PZC74338.1    KPJ10837.1    BABH01025846    AF315318    AAG30945.2    ODYU01012514    SOQ58867.1    NWSH01002265    PCG68757.1    HM046617    ADK55524.1    KJ461917    AHW45919.1    KX958476    ASQ43192.1    NWSH01001148    PCG72391.1    JX491641    KC710020    AB244517    AGC23337.1    AGM90553.1    BAE94664.1    AK402622    BAM19244.1    NWSH01003339    PCG66520.1    PCG66521.1    HQ647012    AET10424.1    AY829748    AAV91362.1    KPJ10841.1    AB195970    BAD74195.1    KX845559    ATB54990.1    PZC74333.1    KJ461921    AHW45923.1    KP843896    AKS40075.1    AY829747    AY829775    AAV91361.1    AAV91389.1    FJ602788    ACM24354.1    JQ708200    AFQ02692.1    AGBW02008280    OWR53838.1    KM217077    KM217078    AJA32865.1    AB251898    BAF03558.1    KM217079    AJA32867.1    KPJ00666.1    KM217080    AJA32868.1    AGBW02014566    OWR41396.1    DQ336356    ABC68342.2    KM881570    AJQ22645.1    AF315317    AF315319    FJ602772    AAG30944.1    AAG30946.1    ACM24338.1    HM046615    ADK55522.1    ODYU01005718    SOQ46845.1    GAIX01009047    JAA83513.1    KR137569    ALI87024.1    RSAL01000012    RVE53492.1    SOQ46842.1    JTDY01014370    KOB52036.1    KJ461913    AHW45915.1    EU668902    ACD01216.1    KX845562    ATB54993.1    PZC74337.1    KX977584    ATN45243.1    KX977585    ATN45244.1    PCG68755.1    MF067296    ASM61894.1    KC710018    KC710022    AGM90551.1    AGM90555.1    JTDY01002160    KOB71979.1    KC710019    KC710024    AGM90552.1    AGM90557.1    RVE53491.1    HM046613    ADK55520.1    GDQN01008714    JAT82340.1    KPJ00670.1    U94328    AAC36146.1    SOQ46844.1    OWR41397.1    NWSH01000548    PCG75721.1    GAIX01014246    JAA78314.1    KZ150027    PZC74790.1    PCG75724.1    KC689795    KX845561    AGQ42773.1    ATB54992.1    PZC74791.1    ODYU01008627    SOQ52368.1    PCG72390.1    MH042022    AXJ21597.1    HM046614    ADK55521.1    KX958480    ASQ43196.1    KQ459597    KPI95180.1    KF251046    AGY56063.1    BABH01035507    HQ219476    ADX96001.1    AB195973    BAD74198.1    DQ063589    AAZ14790.1   
Pfam
PF00011   HSP20
Interpro
IPR001436   Alpha-crystallin/HSP        + More
IPR002068   A-crystallin/Hsp20_dom       
IPR008978   HSP20-like_chaperone       
IPR036116   FN3_sf       
IPR003961   FN3_dom       
SUPFAM
SSF49764   SSF49764        + More
SSF49265   SSF49265       
Gene 3D
PDB
3J07     E-value=1.75514e-23,     Score=266

Ontologies

Topology

Length:
188
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0002
Exp number, first 60 AAs:
0.0002
Total prob of N-in:
0.04246
outside
1  -  188
 
 

Population Genetic Test Statistics

Pi
71.586351
Theta
154.13649
Tajima's D
-1.564231
CLR
293.723357
CSRT
0.0513974301284936
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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