Silkworm Genome Informatics Database

Gene

KWMTBOMO16083

Pre Gene Modal

BGIBMGA004632

Annotation

PREDICTED:_transcription_factor_EB-like_[Bombyx_mori]

Location

Bomo_Chr27(+):8603431-8610137 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 3.941

CDS

ATGTGCGGTGCTGACGAGTTCCTAGAAGACATACTATCCCTGGACAGCGGCGCCGGACCCCTGTCATCGTCGGGCCCCCCCTCGGCCGCCAGTTCCGTGGCAGGGGACTGCGCGATGCTCTCCGATGCGGACATGCACGCGCTCGCTAAAGACAGACAGAAAAAAGACAATCACAACATGATCGAGCGCCGTCGGAGGTTCAATATAAACGACCGGATAAAGGAGCTTGGTACGTTGCTGCCGAAGACGAATGACCCCTTCTACGAAGTGATCCGTGACGTGAGGCCGAACAAGGGAACCATACTCAAGAGCAGCGTCGACTACATCAAGTGCCTGCGAGACGAGGTCAACAGGCTCAAGCAGAGCGAGCAGCGGCGGAAGCAGATCGAACTCCACAACCGGAAGCTGATGCTCAGGATACAGGAGTTGGAGCGTCTGGCGCGCGTGCACGGGCTGCCGGTGTCGGGCGGGGAGGGCTCCCCCCCGCACGCCGCTCCCCCCGCCGCGCCCCCCGCGCCGCACGACGAGCCGCCGCCCACGCAGCCTGAGGTGGTACTGCCGAAGACGGAGCCTGCACCCCTCATGGAGCTTAACGAGCCGCCCCCGGACTTACTCCGGGACATGCCCTCAACGGAATGCCTCTCAGCCTTGGACGCTTTAGACGGTCTGAAGTTAGGATCCTGTTCGCCTCTCAGTCGAGACGAGGGTCTCTCGTTGGGATGTCTAGAACCGGATCTGTGCCTAGATCCAGTTCCAGAGAACCTGTTTAGTCATAAGGATATCAAGATGCGTCTGTCTCCACTGTTGGGGCCCGAGGACAGCAGCGCGGCGCTCAACCTCGCGCAAATAGAAGACCTCATGGATGACGACTCACACAATCCAGTCACGCAAGGTGATCCGATGTTGTGTTCGTCGCCCACCTCGCAGCTGTGCCTGAGCGACGTAGTGGCCGAGGCGGCTGACCGGAATATATCGTCAATGTTACACGACGATCACGCAGGGTTCCCACACAACACCGGCAACTGTTCGTCTTTAATGTCCGAAAGCTCACTAGGCCTCGGAGGTCTCGGAGCTCTGACTGAAGGCTGCCTCCCGAGCTTTCTGATGGGAGGTCCCCACCACCACGCCCCGCACTCGCCCCACTCGCATCCACGGCAGCACTGCTTCGACATGGACCTCGGGGCATGA

Protein

MCGADEFLEDILSLDSGAGPLSSSGPPSAASSVAGDCAMLSDADMHALAKDRQKKDNHNMIERRRRFNINDRIKELGTLLPKTNDPFYEVIRDVRPNKGTILKSSVDYIKCLRDEVNRLKQSEQRRKQIELHNRKLMLRIQELERLARVHGLPVSGGEGSPPHAAPPAAPPAPHDEPPPTQPEVVLPKTEPAPLMELNEPPPDLLRDMPSTECLSALDALDGLKLGSCSPLSRDEGLSLGCLEPDLCLDPVPENLFSHKDIKMRLSPLLGPEDSSAALNLAQIEDLMDDDSHNPVTQGDPMLCSSPTSQLCLSDVVAEAADRNISSMLHDDHAGFPHNTGNCSSLMSESSLGLGGLGALTEGCLPSFLMGGPHHHAPHSPHSHPRQHCFDMDLGA

Uniprot

A0A194QJM4 A0A212FK81 A0A2W1BFJ0

Pubmed

26354079 22118469 28756777

EMBL

KQ458671 KPJ05584.1 AGBW02008142 OWR54109.1 KZ150133 PZC73031.1 + More

Proteomes

UP000053268 UP000007151

Pfam

PF15951 MITF_TFEB_C_3_N + More
PF00010 HLH

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR031867   MiT/TFE_N
IPR011598   bHLH_dom

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

A0A194QJM4 A0A212FK81 A0A2W1BFJ0

PDB

6G1L E-value=1.11552e-32, Score=350

KEGG

101740924 no KO assigned | (RefSeq) transcription factor EB-like

GO

GO:0006959 GO:0046983 GO:0045893 GO:0006508 GO:0016020 GO:0006810 GO:0022857 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Length:

395

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00621

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00269

outside

1 - 395

Pi

198.836742

Theta

149.271488

Tajima's D

0.955818

CLR

0.125619

CSRT

0.642917854107295

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree