Gene

KWMTBOMO16078

Pre Gene Modal

BGIBMGA004574

Annotation

PREDICTED:_solute_carrier_family_12_member_9_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr27(-):8445256-8448070      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.216 Nuclear   Reliability : 1.197

CDS

ATGGCAGAAACCCTTGACCCGCTGTCACCGACTGTGAATATTTCGCCAAGGATTGGAATCCTACAAAAACTAAGGACAAGATTTGGTAGAAATGTACCTATTAATCGAAATAACAGTGAAGGATATGTGGAATTCGGGGAGTTCCGGGTTGAACGTCCCGGAATTAAGAAGGTCGGGACATTCGCCGGCGTCTTCTGTCCCGTCGTGTTATCTATGTTTAGCGCTCTCGTGTTTATACGAATGGGTGAGTAG

Protein

MAETLDPLSPTVNISPRIGILQKLRTRFGRNVPINRNNSEGYVEFGEFRVERPGIKKVGTFAGVFCPVVLSMFSALVFIRMGE

Cofactor

Mn(2+)

Similarity

Belongs to the glycosyltransferase 2 family. GalNAc-T subfamily.

Uniprot

A0A2A4KAM1   A0A1E1W9H6   A0A194QJ95   A0A0N0PB89   A0A1Y1K8K4   A0A182VSV1   + More
D6WJT4   F4WUB9   A0A195C7H7   A0A195FJ83   A0A1A9ZJ56   Q29MP1   A0A1B0BZB6   A0A087ZXW7   A0A1Y1KDM3   A0A0L7QRB5   A0A1A9UMT2   A0A336LS50   E2BRE5   A0A026X0M0   T1HQ51   A0A0T6BDQ7   U4U3P2   E2B0U7   A0A1W4XW25   E2AV35   A0A0J7KYF9   K7IVK9   A0A1I8N2L1   E9J249   A0A151J6F0   A0A158NU44   A0A1J1HZ59   A0A182JCB5   A0A182PK75   A0A084W5J7   A0A1A9XDN1   A0A1J1I0Y3   A0A1I8NU70   A0A154P0U6  

Pubmed

26354079    28004739    18362917    19820115    21719571    15632085    + More
17994087    20798317    24508170    30249741    23537049    20075255    25315136    21282665    21347285    24438588   

EMBL

NWSH01000008    PCG80948.1    GDQN01007431    JAT83623.1    KQ458671    KPJ05587.1    + More
KQ461098    KPJ09476.1    GEZM01089085    JAV57724.1    KQ971343    EFA04772.2    GL888355    EGI62227.1    KQ978143    KYM96797.1    KQ981522    KYN40720.1    CH379060    EAL33652.1    JXJN01023087    JXJN01023088    GEZM01089084    JAV57725.1    KQ414784    KOC61094.1    UFQT01000144    SSX20842.1    GL449962    EFN81723.1    KK107054    QOIP01000004    EZA61551.1    RLU23582.1    ACPB03028822    LJIG01001466    KRT85474.1    KB631899    ERL86938.1    GL444693    EFN60688.1    GL443013    EFN62702.1    LBMM01002020    KMQ95381.1    GL767817    EFZ13099.1    KQ979854    KYN18797.1    ADTU01026197    ADTU01026198    CVRI01000037    CRK93243.1    ATLV01020668    KE525304    KFB45491.1    CRK93244.1    KQ434796    KZC05559.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000075920    UP000007266    UP000007755    + More
UP000078542    UP000078541    UP000092445    UP000001819    UP000092460    UP000005203    UP000053825    UP000078200    UP000008237    UP000053097    UP000279307    UP000015103    UP000030742    UP000000311    UP000192223    UP000036403    UP000002358    UP000095301    UP000078492    UP000005205    UP000183832    UP000075880    UP000075885    UP000030765    UP000092443    UP000095300    UP000076502   

Pfam

PF03522   SLC12        + More
PF00324   AA_permease
PF06957   COPI_C
PF00400   WD40
PF04053   Coatomer_WDAD
PF00248   Aldo_ket_red
PF05186   Dpy-30
PF12796   Ank_2
PF00652   Ricin_B_lectin
PF00535   Glycos_transf_2

Interpro

IPR018491   SLC12_C        + More
IPR004841   AA-permease/SLC12A_dom       
IPR002293   AA/rel_permease1       
IPR020472   G-protein_beta_WD-40_rep       
IPR019775   WD40_repeat_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR018170   Aldo/ket_reductase_CS       
IPR001680   WD40_repeat       
IPR006692   Coatomer_WD-assoc_reg       
IPR023210   NADP_OxRdtase_dom       
IPR010714   Coatomer_asu_C       
IPR036322   WD40_repeat_dom_sf       
IPR036812   NADP_OxRdtase_dom_sf       
IPR017986   WD40_repeat_dom       
IPR020471   Aldo/keto_reductase       
IPR007858   Dpy-30_motif       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR002110   Ankyrin_rpt       
IPR001173   Glyco_trans_2-like       
IPR000772   Ricin_B_lectin       
IPR035992   Ricin_B-like_lectins       
IPR029044   Nucleotide-diphossugar_trans       

SUPFAM

SSF50978   SSF50978        + More
SSF51430   SSF51430       
SSF48403   SSF48403       
SSF50370   SSF50370       
SSF53448   SSF53448       

Gene 3D

2.130.10.10     3.20.20.100     1.25.40.20     3.90.550.10    

CDD

cd06660  Aldo_ket_red
cd00204  ANK
cd00161  RICIN

ProteinModelPortal

A0A2A4KAM1   A0A1E1W9H6   A0A194QJ95   A0A0N0PB89   A0A1Y1K8K4   A0A182VSV1   + More
D6WJT4   F4WUB9   A0A195C7H7   A0A195FJ83   A0A1A9ZJ56   Q29MP1   A0A1B0BZB6   A0A087ZXW7   A0A1Y1KDM3   A0A0L7QRB5   A0A1A9UMT2   A0A336LS50   E2BRE5   A0A026X0M0   T1HQ51   A0A0T6BDQ7   U4U3P2   E2B0U7   A0A1W4XW25   E2AV35   A0A0J7KYF9   K7IVK9   A0A1I8N2L1   E9J249   A0A151J6F0   A0A158NU44   A0A1J1HZ59   A0A182JCB5   A0A182PK75   A0A084W5J7   A0A1A9XDN1   A0A1J1I0Y3   A0A1I8NU70   A0A154P0U6  

KEGG

101745558    K14429 solute carrier family 12 (potassium/chloride transporters), member 9 | (RefSeq) solute carrie

GO

GO:0006811   GO:0005215   GO:0055085   GO:0016021   GO:0022857   GO:0005198   GO:0016192   GO:0016491   GO:0006886   GO:0030126   GO:0005623   GO:0006884   GO:0055075   GO:0055064   GO:0015379   GO:1902476   GO:1990573   GO:0030246   GO:0016757   GO:0006486   GO:0005794  

Length:

83

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.7806

Exp number, first 60 AAs:

2.418

Total prob of N-in:

0.19094

outside

1  -  57

TMhelix

58  -  80

inside

81  -  83

 

 

Pi

47.019013

Theta

68.803543

Tajima's D

-0.839774

CLR

52.263304

CSRT

0.165641717914104

Interpretation

Uncertain