SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16074
Pre Gene Modal
BGIBMGA004576
Annotation
PREDICTED:_NACHT_and_WD_repeat_domain-containing_protein_2_[Papilio_xuthus]
Location in the cell
Cytoplasmic   Reliability : 1.854
 

Sequence

CDS
ATGAATAAGAAATCTCCATTGTATACTGTGGAATGGATCGGTCGAGACGGTCTAGATACAGAGACGCACAGCGAATATCTCAACCATTTCATTGCTCATTTTTATAAGAACATCATCAAATTGGTCGACAGGGCAATGCGTAAAGAAGACAGTAGCGCACAAGGTCAAATTGTAACAGAAATCCTGCAGCATTTACATGCTTGTAATAATTCTGTCAAAGTTTTTCATGGCAGAGAAGAAGATTTGAAATTCATCGAGGACTATATGAAAGACGCTTCCGATAAACCATTGGTTTTGTATGGTGAAGGCGGCTGCGGAAAGACCAGTTTACTAGCCAAGAGTTCCGCCATGTCCCTCGATACATGGTTCGCAGAGGCCCGTCCTACAAACATCATCAGATTCCTTGGAACTACACCTGATTCCAGCGCCTTAACTCCGACGCTTATCTCAATTTGTCAACAGATATCCTACAACTTTGCCCTTCCGTTCGAGAGCATCCCAGACGACCTCGTGCCCTTGACTGCTCATTTCAAACAGCTACTGACAATGGCAAGCCAGAACCAACCCCTACTACTCTTTTTAGATTCCGTTGATCAGCTAACTGGCATTGGCACAGAAAACAATAAAGTATCTTGGCTACCCACAAGATTGCCACCACACTGCAAGATAATTGTAACATGTGCGTGCGAAGAAGCTAATCCAGATGTGTCCAAAGAATATGACGTACTTCGGAGGATGATTGACTCAGAAGACAGCTTTTTAGAAGTCAAAGCTCTCGGCGAAGATCTAGCCATGCAAGTTCTGAAATTGTGGATGGCATCTGCAGCCAGAGATCTCACAAATTACCAGTGGCGTTTGGTTTCTAATGCCATTGGACAATGCTCTTTACCGATATTCGTGAAACTTGTTTTTGCAGAGGTCTGCAGATGGAGAAGCTACACCAAGCCTCAGGATACCCACCTCGCTTCTACAGTCATGGATTCGATTATGATGTTGTTTGAGAGGATCGAAAAACAGCATGGACGTCTACTGGTCTTTCACGCTTTGGCTTACATCACGGCAGCCCGCAGCGGTCTTTCCGAGACGGAACTTGAAGATCTCATATCGTTGGACGACAGAGTCTTGGACGACGTATACCAGTACCATTTGCCGCCTGTCAGGAGAATTCCTCCTCTGCTTTGGACTAGGATCCGTAACGATTTGCCTAACTACCTCTCTGAACGCGAAGCCGACGGTGTTTCCGTGATGAACTGGTACCACAGGCAGTTTCGTGACACAGCCCGCGAGAGATACTTCAAGAATATGAATATGGCGATGTACTTTCATTCTATGATTGCTGATTACTACCTCGGTATCTGGGGTGGTGGTGTACCAAAGCCGTTCAAGTATACAGAAATCCAGCGTCATCGGTTCAATCTTGCGGATAGGGAGGGTGTGGCTGACAGGAAGGTCCCACTTCAGCCTTTGGTCTTCATGTCAGCCGATGGAACATCCAAGAGATACAATTTACGAAAGTTTGGAGAATTGCCATTTCATCTAGTAAGATCGAAGCGATTCACCGATTTATACGCAGAAGTACTCTTCAACTACGAGTGGCTTCACGCGAAACTCAACTGCTGTCCTCTGCAAGCTGTCCTGGCTGATTTCGAAGATGCTAAGCTACATGTTAATAAAGACGCAGTGAGAGAATTAATGCTAGTAGCAGATGCTTTGCGTCTTGGTGGTGCTATTCTGGGTACATACCCTGATATGTTGGCGCCCCAATTGGTTGGAAGACTTTTGCCGGAGGCCCCTCATAATCCTGCTGTAGCGTCTCTGCTGAAACAATGTCACGATAAAGGAAAAAATCACTGCGCTTTACTGCCATCCCACCATTGCTTACACACCCCGGGCGGTCCTTTGAAGTATTCTTTAGAAGGTCACCAATTCGCTGTTTTCGCATTTCGCCTAAGCTCGGACAAACGCTACGTTGTGTCAATCTCTAGTAGGGTTATATCCTGGGACCTTTCCACTTCGGACCTGGCTCGAGATCTATGTCCACAATTGGAAGGTATTATGCAGAATCTGGAGCTCTCACCCGACAATAAATGGGCCGCTGCTTCAACGAATAACTCTGTCTCCATGTTGTTGAACATGCTGACCAGTGAATACGTGACCATTGATAATCCACTTGATGAAGGGGAAACAGTCCGAGGAGTTTTCGTCCTCAACCATCACATGATAATTTACGGTCCTCGCTCCTGGGTCCAGTACAGCATGAGAGGTGAACACGAGAAGACTATTCCTGCTCCCGATACCGCTCCGTATGATGACGTCGAATGGGAGATACTCTCAATGGAGTTTCGTGATTTGGAGAACTTCGTTCTGGTTATGTGGAGCGGGGATTTGGATGAAGATAGGTTGCTGGTGTTGTTCTGTAAGGAGGGGGCTTGGATGCGGCCTCTGAGATGCAGAGGTGCCATGGCTCTCAGCAAAAACTGGAACAAGATCTACTCTAGTGACCCTGATAGAGGATACCAGATATCAATTTACCAGCTCAATGACGAAGAAGGCTGTTGGGACAAAATCGAAGAGTTACATCATCGCGAGACGGACACCGCTGAAGCAATGCTCCAATTAAAACGCGGGAAAAAGGACAAAATGTTGCTTGGTTAG
Protein
MNKKSPLYTVEWIGRDGLDTETHSEYLNHFIAHFYKNIIKLVDRAMRKEDSSAQGQIVTEILQHLHACNNSVKVFHGREEDLKFIEDYMKDASDKPLVLYGEGGCGKTSLLAKSSAMSLDTWFAEARPTNIIRFLGTTPDSSALTPTLISICQQISYNFALPFESIPDDLVPLTAHFKQLLTMASQNQPLLLFLDSVDQLTGIGTENNKVSWLPTRLPPHCKIIVTCACEEANPDVSKEYDVLRRMIDSEDSFLEVKALGEDLAMQVLKLWMASAARDLTNYQWRLVSNAIGQCSLPIFVKLVFAEVCRWRSYTKPQDTHLASTVMDSIMMLFERIEKQHGRLLVFHALAYITAARSGLSETELEDLISLDDRVLDDVYQYHLPPVRRIPPLLWTRIRNDLPNYLSEREADGVSVMNWYHRQFRDTARERYFKNMNMAMYFHSMIADYYLGIWGGGVPKPFKYTEIQRHRFNLADREGVADRKVPLQPLVFMSADGTSKRYNLRKFGELPFHLVRSKRFTDLYAEVLFNYEWLHAKLNCCPLQAVLADFEDAKLHVNKDAVRELMLVADALRLGGAILGTYPDMLAPQLVGRLLPEAPHNPAVASLLKQCHDKGKNHCALLPSHHCLHTPGGPLKYSLEGHQFAVFAFRLSSDKRYVVSISSRVISWDLSTSDLARDLCPQLEGIMQNLELSPDNKWAAASTNNSVSMLLNMLTSEYVTIDNPLDEGETVRGVFVLNHHMIIYGPRSWVQYSMRGEHEKTIPAPDTAPYDDVEWEILSMEFRDLENFVLVMWSGDLDEDRLLVLFCKEGAWMRPLRCRGAMALSKNWNKIYSSDPDRGYQISIYQLNDEEGCWDKIEELHHRETDTAEAMLQLKRGKKDKMLLG

Summary

EMBL
BABH01025676    BABH01025677    KZ149997    PZC75382.1    NWSH01001908    PCG69725.1    + More
RSAL01000078    RVE48741.1    AGBW02009801    OWR49898.1    KQ460761    KPJ12573.1    ATLV01013235    KE524847    KFB37533.1    CH477356    EAT42778.1    AXCN02001729    ACPB03010524    JXUM01140736    JXUM01140737    JXUM01140738    JXUM01140739    KQ569115    KXJ68757.1    KB632344    ERL93057.1    UFQT01001083    SSX28802.1    APGK01055161    APGK01055162    KB741261    ENN71565.1    GDHF01004214    JAI48100.1    GFDL01004390    JAV30655.1    CM000160    EDW97367.1    KK107238    EZA54682.1    CH954181    EDV49098.1    APCN01001484    AAAB01008816    EAA05136.3    DS231980    EDS30244.1    AXCM01001359    OUUW01000008    SPP83672.1    CH479185    EDW38085.1    CM000070    EAL28866.2    KRT01137.1    KRT01136.1    JRES01001582    KNC21746.1    KRT01135.1    CCAG010012025    KQ976504    KYM82920.1    GL888056    EGI68608.1    KQ982205    KYQ58996.1    CH480815    EDW41963.1    CH902629    EDV35337.1    GL449017    EFN83516.1    CH933806    EDW15667.1    ADTU01023849    ADMH02002090    ETN59363.1    JXJN01013283    JXJN01013284    JXJN01013285    AE014297    AAF55270.1    KQ979122    KYN22530.1    KQ977771    KYM99979.1    KQ981522    KYN40557.1    CH940650    EDW66880.1    QOIP01000007    RLU20944.1    GL442898    EFN62780.1    CP012526    ALC45346.1    CM000364    EDX12732.1    KK853768    KDQ84119.1    CH964272    EDW84218.1    CH916369    EDV92570.1    KZ288289    PBC29252.1    NNAY01000701    OXU26911.1    KQ414615    KOC68524.1    GGMR01014988    MBY27607.1    ABLF02037162    GL765283    EFZ16709.1    GL732635    EFX69546.1    DS235222    EEB13481.1    HACA01008250    CDW25611.1    JH431948    KQ763581    OAD54968.1    GDIQ01144357    JAL07369.1    GDIQ01040043    JAN54694.1    GDIQ01145710    JAL06016.1    GDIQ01022359    JAN72378.1    GDIQ01076922    JAN17815.1    GDIP01086821    JAM16894.1    GDIP01013562    JAM90153.1    GDIP01087871    JAM15844.1    GDIP01037234    JAM66481.1    GDIP01111618    JAL92096.1    GDIQ01178037    JAK73688.1    LRGB01000243    KZS20194.1   
Pfam
PF05729   NACHT        + More
PF00400   WD40
PF13271   DUF4062
PF13191   AAA_16
Interpro
IPR019775   WD40_repeat_CS        + More
IPR027417   P-loop_NTPase       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR007111   NACHT_NTPase       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR025139   DUF4062       
IPR011048   Haem_d1_sf       
IPR036322   WD40_repeat_dom_sf       
IPR041664   AAA_16       
IPR011044   Quino_amine_DH_bsu       
SUPFAM
SSF50998   SSF50998        + More
SSF52540   SSF52540       
SSF51004   SSF51004       
SSF50978   SSF50978       
SSF50969   SSF50969       
Gene 3D

Ontologies

Topology

Length:
884
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.735919999999999
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.02151
outside
1  -  884
 
 

Population Genetic Test Statistics

Pi
263.014967
Theta
195.025769
Tajima's D
1.713287
CLR
0.279683
CSRT
0.828558572071396
Interpretation
Uncertain
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