SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16073
Pre Gene Modal
BGIBMGA004576
Annotation
PREDICTED:_uncharacterized_protein_LOC106713509_[Papilio_machaon]
Location in the cell
Cytoplasmic   Reliability : 1.44 Mitochondrial   Reliability : 1.424 Peroxisomal   Reliability : 1.154
 

Sequence

CDS
ATGTGGCGTTTTGGTAAGAAAAACCTTTACGTCTGGAGTCTTGAAACCACGACGCTGATAAAAGTACTGGACGCTCACTTTGGCAGAATAGTCCAACTGGAACCGTTGACTGTTGGAGCTTGGAACAATGTGATAACGTCGTCCATAGACAGGACGGTCAAGATATGGAACATTGATAACATATTTGAGCAAGTACATAAGATTGATCGACAAGAACTGCCCATTGATTCTATTAGCCTAGCACGCGACAAGCAACTAGCGGTAACCGTCACCCGTAGCTGTTGGGGCCTCTGGGATACGAGCACCGGTCGGTTGATGGCGCAATTAGCTGACGCTCCGCTCGGCGCCATCGTCACGCACGCGGTCATCACGCCCACTGGAGATCACGTAGTCACTGCGGAATCGGGCTGCGTTATTATATGGGATACTCCTGAAAAACAGGGAATCTTCAAGGAAGAACAAAAAGGTGTAAAACAAGTTCTGCTTCTAGAAGACGGGACGAAATTCATCACGATATCTATGCAGGTGCCCGCTGATAACACGGATAACGTTGCTGTTGCTTATATCGTGGCAAGAACTATACCTGACGGTGAAAGAATTTACACAGCAGAATACGACGTTCGGGGTACCGGCTACAGAGCCGCTGTGGTTTCTGCAGAGGAACATCATCTAGTTGCTCCCGGAGTGGACAAGTCCTCCAGGGACTGTCTACATGTATTCCATGCTAGAACCGGAGCGAGGATACATAGGATACCAATTAAGAACAGCGGCATCAAAGACATGCAATCTATTGTGGCGTTGCCCCACAAGGCGCTCTGGGTGGCAGTCGTCGGTAATGACAAAGCCGGTATATTGGACATCAAAAGCAAAAGACTCATCAGATTTGTTCCACGTTGGAATGGCGCATGTACTCGCGATGGTAAGCTGGGGCTCTGTGCGCCTTCCAGAGGGGGGCTCGACCTCATAGAACTAAAGAGAGGAACATCGGTGCACCCCCTTATATACAGGGCGGCTGAAGGCGTATTTTCCATCATCACCATGTTTAGCTCGACAGACCATTATGTATTTTATTATCACAGCGGCAGGAAAACACTGAGAGTTTTCAGAACAATAGACGGTCGTGCTATAGCTGAGTACCGGGCGCCGGCCGAAGTCACAGGCGTGGCCAGCGCTCATGGAGGCAAAGCTGTCGCTATCGCCTCACAGGACGGTTGTCTCACAATCCTTAACATTGTTGACCCATACGAATGA
Protein
MWRFGKKNLYVWSLETTTLIKVLDAHFGRIVQLEPLTVGAWNNVITSSIDRTVKIWNIDNIFEQVHKIDRQELPIDSISLARDKQLAVTVTRSCWGLWDTSTGRLMAQLADAPLGAIVTHAVITPTGDHVVTAESGCVIIWDTPEKQGIFKEEQKGVKQVLLLEDGTKFITISMQVPADNTDNVAVAYIVARTIPDGERIYTAEYDVRGTGYRAAVVSAEEHHLVAPGVDKSSRDCLHVFHARTGARIHRIPIKNSGIKDMQSIVALPHKALWVAVVGNDKAGILDIKSKRLIRFVPRWNGACTRDGKLGLCAPSRGGLDLIELKRGTSVHPLIYRAAEGVFSIITMFSSTDHYVFYYHSGRKTLRVFRTIDGRAIAEYRAPAEVTGVASAHGGKAVAIASQDGCLTILNIVDPYE

Summary

EMBL
NWSH01001908    PCG69725.1    KZ149997    PZC75382.1    ODYU01006321    SOQ48064.1    + More
KQ460761    KPJ12573.1    RSAL01000078    RVE48741.1    AGBW02009801    OWR49898.1    KQ458842    KPJ04911.1    NEVH01004413    PNF39578.1    GFXV01001877    MBW13682.1    KQ981522    KYN40557.1    ADTU01023849    GL888056    EGI68608.1    KQ976504    KYM82920.1    KQ979122    KYN22530.1    KQ435711    KOX79674.1    QOIP01000007    RLU20944.1    GL442898    EFN62780.1    KQ977771    KYM99979.1    DS235222    EEB13481.1    KQ982205    KYQ58996.1    KZ288289    PBC29252.1    KK107238    EZA54682.1    KQ763581    OAD54968.1    GGMR01014988    MBY27607.1    ABLF02037162    GL449017    EFN83516.1    AXCM01001359    AJWK01032340    AJWK01032341    AJWK01032342    AJWK01032343    AJWK01032344    AJWK01032345    APCN01001484    ACPB03010524    GAKP01023219    JAC35737.1    AAAB01008816    EAA05136.3    UFQT01001083    SSX28802.1    AXCN02001729    ADMH02002090    ETN59363.1    ATLV01013235    KE524847    KFB37533.1    NNAY01000701    OXU26911.1    CH477356    EAT42778.1    DS231980    EDS30244.1    KQ414615    KOC68524.1    KK853768    KDQ84119.1    JXUM01140736    JXUM01140737    JXUM01140738    JXUM01140739    KQ569115    KXJ68757.1    APGK01055161    APGK01055162    KB741261    ENN71565.1    KB632344    ERL93057.1    GFDL01004390    JAV30655.1    GDHF01013227    JAI39087.1    JRES01001582    KNC21746.1    CH940650    EDW66880.1    CH902629    EDV35337.1    GDHF01004214    JAI48100.1    CH954181    EDV49098.1    AE014297    AAF55270.1    CM000160    EDW97367.1    CM000364    EDX12732.1    CH916369    EDV92570.1    CH964272    EDW84218.1    CH933806    EDW15667.1    LJIJ01000234    ODN00079.1    OUUW01000008    SPP83672.1    CM000070    EAL28866.2    KRT01136.1    CH479185    EDW38085.1    KRT01135.1    KRT01137.1    CCAG010012025    JXJN01013283    JXJN01013284    JXJN01013285    CP012526    ALC45346.1    LNIX01000028    OXA41697.1    PYGN01002564    PSN30262.1    GL732635    EFX69546.1    GDIP01086821    JAM16894.1    GDIQ01022359    JAN72378.1    GDIP01123917    JAL79797.1    LRGB01000243    KZS20194.1    GDIP01111618    JAL92096.1   
Pfam
PF00400   WD40        + More
PF13271   DUF4062
PF05729   NACHT
PF13191   AAA_16
Interpro
IPR011047   Quinoprotein_ADH-like_supfam        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR011048   Haem_d1_sf       
IPR019775   WD40_repeat_CS       
IPR027417   P-loop_NTPase       
IPR025139   DUF4062       
IPR007111   NACHT_NTPase       
IPR011044   Quino_amine_DH_bsu       
IPR036322   WD40_repeat_dom_sf       
IPR041664   AAA_16       
SUPFAM
SSF51004   SSF51004        + More
SSF50998   SSF50998       
SSF52540   SSF52540       
SSF50969   SSF50969       
SSF50978   SSF50978       
Gene 3D
PDB
6J6Q     E-value=0.000442876,     Score=103

Ontologies

Topology

Length:
416
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.71391
Exp number, first 60 AAs:
0.0279
Total prob of N-in:
0.01547
outside
1  -  416
 
 

Population Genetic Test Statistics

Pi
306.830286
Theta
164.466183
Tajima's D
3.467589
CLR
0.364735
CSRT
0.993200339983001
Interpretation
Uncertain
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