Silkworm Genome Informatics Database

Gene

KWMTBOMO16070

Annotation

PREDICTED:_zinc_finger_protein_90-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr27(+):8070955-8084067 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.763

CDS

ATGAGTGGAAATCAAACGGATAATTGCTGTGGGTGTTTGTGCAGTTCAGATGAAAGATCTATAACAAAACTGTCTATTGAAAACGGATTTCTGCATAACGTATTACAGGTTGATTCCATATTATTATGCTATCTATGCAAGATACAAGCAAAAAAAGCAGATCTATTTGTGCAAAATATACAAAGCAATCAAATTTTACTCGAGAACTACCACAGTATTAATAATTTATCTGAAGACTTAAGAAAGTATGTAAAACCTATAGTTAATTTAAGCTACGTAACACTAAATGCTATTGAATTAAACGAGGTCAGTGGCTCAGCAGAAGAAACTTTTGTTATACTAAACAGTAGAAATGGTGACACTAAAATCAAAATGGAAATGAAGGAGGAAGAAACAGACACTTGTGATGAGGATTTTATTCCACCTGATGAAGAATGCCAAGATCGAGATTGCAAAGAGGAAACATTTCCACTCAACGAACTCCTGAAAGCCGAATTAGAAGTTGAAGAGATTGATCTTATGAGCTTAAAGAAATCTCTAGTAGCTAACAAATTGAAAAAAAGAAAAAAAGTAAATAAAAGTCACACTAAGGCACAATTGATACAAAAAATATATTTAACCAAGAAGCAGTGTGTAGCGGAAAGGGAAAGAATGGCACAGGATGTAAAATATCTGGATAGTCCATACAAATGTGTTGATTGTTTAAAGGGATTTGACTATAAGCCAAGTTTCTACAAACATATGGAAAGACATAATGAGGATATAGGGAATTACGTGTGTGACGTGTGCAAACAGCGCACGAACTCGGAGAAAAAACTGGCTAATCATAAGAAATATCATACTGTTCGCTACAAATGTACTGAATGCGATTTGACCCGGGTCAGTTATGCGGCTGTAAAATATCACTACAACGTGTTCCATTCTCTTGGATACTACCAATATAACTGTACCCACTGTTCGAAGATTTTCAAGAGTGAAATAACCTTAAGGAAACACATATGGTATGCCCACAAGACCCGGGAACGTGTTATATGTGATCATTGTCATCAGAGCTACGTCAACAAAGAGGTCTTGAAGGCGCATATGATGAGACGGCACATACAGCAGGTGTCGGTGGCGGGGAGGTGCGAGCGCTTCGTGTGCCAGGACTGCGGGGAGGCCTTCAGGACGCCCTCGCAGCTGAAGACGCACGGCATCAAGCACTGGCAGTGCAAGAACTACTACTGCGTCGAGTGCGACAAAAGTTTCAAATCGCCTTATTCGTTGAAGACTCATTTACGAACGTCCTCATCGCATGTCAAATACAAAGAGTTACCATTAAAGTGTCTACATTGCGAGAAGCGTTTCGCCGTCAAACGAGATTTGGAGCAGCACACGAACCGGATACACCTGAACATCAGGCCGTTCAAGTGCGACCGCTGCGACAAGGCGTACGTGAGCTCTTCCTCGCTTAAGGAGCACATCCGGATGACGCACGAGGGGTACAAGCGACCCCTCAAGTACCCCTGTCCGACTTGTCACAAAGTATTCGATATACTGAAGACTCACATCCGCACGCACACCGGCGAGCGCCCCTACCGCTGCGGCAAGTGCCCGGCGCAGTTCAGCCAGGCCGGCGTGCTCGCCACGCACAACAAGCTCGTGCACCTCAAGCTCACCAGGGACGGGAGACCGAAGCCAGCGCCGCCCAAATAA

Protein

MSGNQTDNCCGCLCSSDERSITKLSIENGFLHNVLQVDSILLCYLCKIQAKKADLFVQNIQSNQILLENYHSINNLSEDLRKYVKPIVNLSYVTLNAIELNEVSGSAEETFVILNSRNGDTKIKMEMKEEETDTCDEDFIPPDEECQDRDCKEETFPLNELLKAELEVEEIDLMSLKKSLVANKLKKRKKVNKSHTKAQLIQKIYLTKKQCVAERERMAQDVKYLDSPYKCVDCLKGFDYKPSFYKHMERHNEDIGNYVCDVCKQRTNSEKKLANHKKYHTVRYKCTECDLTRVSYAAVKYHYNVFHSLGYYQYNCTHCSKIFKSEITLRKHIWYAHKTRERVICDHCHQSYVNKEVLKAHMMRRHIQQVSVAGRCERFVCQDCGEAFRTPSQLKTHGIKHWQCKNYYCVECDKSFKSPYSLKTHLRTSSSHVKYKELPLKCLHCEKRFAVKRDLEQHTNRIHLNIRPFKCDRCDKAYVSSSSLKEHIRMTHEGYKRPLKYPCPTCHKVFDILKTHIRTHTGERPYRCGKCPAQFSQAGVLATHNKLVHLKLTRDGRPKPAPPK

Uniprot

A0A2H1W7Z1 A0A2A4JGB7 A0A212F827

Pubmed

22118469

EMBL

ODYU01006917 SOQ49191.1 NWSH01001510 PCG71021.1 AGBW02009801 OWR49895.1 + More

Proteomes

UP000218220 UP000007151

Pfam

PF00096 zf-C2H2 + More
PF12171 zf-C2H2_jaz

Interpro

IPR022755   Znf_C2H2_jaz        + More
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2H1W7Z1 A0A2A4JGB7 A0A212F827

PDB

5V3M E-value=2.09813e-24, Score=280

KEGG

101742437 no KO assigned | (RefSeq) zinc finger protein 675-like

GO

GO:0003676 GO:0046872 GO:0008270 GO:0016020 GO:0022857 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Length:

564

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01408

Exp number, first 60 AAs:

0.01227

Total prob of N-in:

0.00458

outside

1 - 564

Pi

202.837166

Theta

157.664893

Tajima's D

0.267819

CLR

0.173247

CSRT

0.440677966101695

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics