Gene

KWMTBOMO16069

Pre Gene Modal

BGIBMGA009519

Annotation

Yokozuna_[Bombyx_mori]

Location

Bomo_Chr27(+):8065705-8069315      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.292

CDS

ATGCGCTATGATAATGAAAGCAACTTACAGCAATATTTCCTAAAATTTGAAGGAATTCTTAGCGAATTAGCGGCAATCAACGTAAACGTCGATGTAGAAGATCAAATTTGCTATCTGCTGTCTTCTTTACCAAAGATATACGATCAATTAATTACATCAATTGAGACTATGGCTTCCGAGAAACAGCTGAACCTAGAATTTGTTAAAGCAAGACTACTCGATATGGAGACAAAGTTAAAAATGGACAGAAATAGTGAAAGCTATGAGAATAATGCCTTCATCACGTGCCACTCCTGCGGAAAACGTGGACACAAATCATTCGAATGCCGAAGATCAGGACGAGGACAAGGGCCGAGTAGAGGACAGTCATTGACACGAGGATGGAGCTATCCAAGATCGCGTGGACGCTCATTTAGAGGAAATTCAAGTTCACGACATACAACGTATCAACATACTTCAGCAGCAGGCAGAGACGACAAAGAAATAGGTTTCATTGCTAGCGATATTATTGCTAATGTGGGTGAATGTGGTAACATAGAACTAATTATAGACTCAGGATGTACGGAGCATTTAATAAATGAAAAATATGAAAATTATATGACGGATATTACGTACTTAGATAAACATGTCAAAATATTCGTAGCTAACGGCCAATGTATTACAACTAGTAAAAGAGGTAAACTTAAAGTAAAATATCAAAATACTACGATTAATATTGATGCTCTAATTGTGAAAGATGTTTCATACAATTTATTATCAGTAAAAAAGATTGTCGAGGCAGGTTTTAACATAAACTTTAATAAATACAATGTTAAAATATTTAATAAAAATACATTTTTACGCGGCACCGTGCAAGGAAAGTTGTATAAGCTACAAGCCGAATTATGTAAGTCCGAAGTTTGTAATGTTACTGATGCGACAGATTTATGGCACAAACATTTAGGTCACTTAAATAGGAAAAGCCTTAATATACTAAACTTACCTGTATCTAATAGAATTTGCAGTCCTTGTATGGAGGGCAAAGCCACCCGAAGCCCATTCACGCCTATCCCAAAGCCTAGAACGAAAATGACAGCCGAGATGCTTCACACAGATATAGCAGGACCGATCAGACATCAAGGACCTAATGGTGAAAAATATTTTATGACAATTATTGACGATTTCTCTCATTTTTGCGTAGTGTATCCCCTGAAGAGCAAATCTGAAGCAACAGAACGACTGATGAACTATGTATTAAGAATTGAAAACGAAACGGGGAATAAAGTTAAAAGAATTAGATGCGATAATGGTGGAGAGTACACTGCTAATAGTTTGAAACGTTTTTGCATAAATAGAGGTATTAGTTTAGAATATACATTACCATACACGCCACAACTTAATGGCATATCAGAACGGATGATCCGCACATTATGCGACAAAACGAGGACTCTATTAGCGGAAACAAATTTGCCAAAACATCTGTGGTGCGAAGCGATACAATGTGCAGTTTACCAATTAAACAGATCGCCATCATGGGCCATAAACTTCAAGACACCCAGCGAAATATTTTTTGGTAAAAACGACCTATCGAGATTGAGAGTATTTGGTTCCAAAGCTTGGGCTACTATAGTACCCAAACCGGACAAGTTTGCCAAGAGAGCAAAAGAAACAAGAATGGTAGGTTATGGAACTGTTGGTTACAGATTATGGGATCCAGAAGAAGATAAAATAGTTATTTCCAGAGATGTAAGATTTGATGAAAGCGATATTAAATTCAAAAATAACGAAGAAGTGAAACAAGTTAGATATATTCAAGACAAAGAAGAAGAAATCAATAAAGAAAAGCAAGATATTGTAGAACAGGAAGATGAATTTAAAGATGCAGAAATGAACACTGATCAAACTGAAGAAGCAATAATCAGACCCAAAAGAACGATAAATCCTCCTGCTTATCTTAAAGATTACGAGACGAATATAGAAAACATAAATGAAACTAATATTGTTATATGTCTGAGTGCACATGCACCAGAAACTTTCGAAGAAGCTATAAAAGAACCAGAATGGAAAAACGCAATCAATAAAGAGCTAGATGCACTCCAAAGACTAGAAACGTGGGAAGAACAAGAAATAACCGATGGAAGAAAACTCATAGATACAAAATGGATATTTAAACAAAAAGAAGATGGAACAAAAAAGGCAAGACTGGTAGCTAGAGGCTTCCAACAAAAGAAAAAAGATATTTTTGACAGCGTATATGCACCCGTTGCTAGACATTCAACCATAAGAATGATCTTATCAAAAGCTGTACAAGATGATTTAAAGATTATTCAGCTTGACATTCCCACTGCATTCCTAAATGGAAAATTAAAGTCTGATGTATTTATCAAAATACCCCAAGGATTAGAAATAAAAAATAATAATACAGCATTAAAACTAAAGAGAGCATTGTATGGATTGATTGAATCACCAAAATGTTGGAATGAAACACTTGACGAATTTGCGAAAGCTAACGGATTCCAAAGATCAGAATATGATTACTGTTTGTATTACAAAGAAGATTGCTGGATGCTGATTTACGTGGACGATATCCTAATCATTGGAAACGGGGAAGATATTATTAAAGCACTTAAGGAGAAGTTTAACGCAAAATATATGGGCGAAATTAAGAACTTTCTCGGAATGGAAGTTAAAAGAAATGAAGATACCTTAGAACTGAAACAAACTAAAATGATTGAAAAGATATTGACTAAATTCAAAATGGATGAATGTAACGGAATTAAAACTCCCATGGAAAGAAATTACAATATAGAAATAAAGGACAATACAGAAGTTTTGGACGTACCGTATCGAGAACTAATAGGAAGTCTAATTTATCTTACTGTAACAACAAGACCGGATTTAACATTTGCAGTGTCATATCTGAGCAGATTTTTAGATAAACCGAACGAAGAATTATGGAAAGCTGGAAAAAGAGTAGTACGTTATTTGAAAGAAACAAAAGAAAAAGGATTATTATTTAAAAAGACAAATGACAATAATTTATACGGATTTTCTGATGCCGATTGGGCTGGAGATAGAAGCGACAGAAAAAGTGTTAGCGGTGGTATTATCCTACAAGGGCAAAACCCCATTGCTTGGTTTTCAAAGAAGCAACAATGCGTAACTTTATCGTCTGCTGAAAGCGAGTATGTAGCCGCCGCATCATTAGCACAGGAAATTGTTAATTTAAAAGGCATATGTAAGCACCTAGGTTGTGATGTAAATGCCGTGCTATTTGTTGATAACAAAAGTGCGATATCAATGGCCAAGAATTACGAGAACTCTAAGCGTACAAAACACATTGATATACGGTTTCATTATATAAAAGACTTGGTTGTCAATAAGGTGATCAGCATAGAACATATTTGTACCAATGAAAATTTAGCGGATGTTATGACTAAAAGTTTGAGCACAGACAAATTTTATAAATGCATTGATAAGTTCTTGTGCTAA

Protein

MRYDNESNLQQYFLKFEGILSELAAINVNVDVEDQICYLLSSLPKIYDQLITSIETMASEKQLNLEFVKARLLDMETKLKMDRNSESYENNAFITCHSCGKRGHKSFECRRSGRGQGPSRGQSLTRGWSYPRSRGRSFRGNSSSRHTTYQHTSAAGRDDKEIGFIASDIIANVGECGNIELIIDSGCTEHLINEKYENYMTDITYLDKHVKIFVANGQCITTSKRGKLKVKYQNTTINIDALIVKDVSYNLLSVKKIVEAGFNINFNKYNVKIFNKNTFLRGTVQGKLYKLQAELCKSEVCNVTDATDLWHKHLGHLNRKSLNILNLPVSNRICSPCMEGKATRSPFTPIPKPRTKMTAEMLHTDIAGPIRHQGPNGEKYFMTIIDDFSHFCVVYPLKSKSEATERLMNYVLRIENETGNKVKRIRCDNGGEYTANSLKRFCINRGISLEYTLPYTPQLNGISERMIRTLCDKTRTLLAETNLPKHLWCEAIQCAVYQLNRSPSWAINFKTPSEIFFGKNDLSRLRVFGSKAWATIVPKPDKFAKRAKETRMVGYGTVGYRLWDPEEDKIVISRDVRFDESDIKFKNNEEVKQVRYIQDKEEEINKEKQDIVEQEDEFKDAEMNTDQTEEAIIRPKRTINPPAYLKDYETNIENINETNIVICLSAHAPETFEEAIKEPEWKNAINKELDALQRLETWEEQEITDGRKLIDTKWIFKQKEDGTKKARLVARGFQQKKKDIFDSVYAPVARHSTIRMILSKAVQDDLKIIQLDIPTAFLNGKLKSDVFIKIPQGLEIKNNNTALKLKRALYGLIESPKCWNETLDEFAKANGFQRSEYDYCLYYKEDCWMLIYVDDILIIGNGEDIIKALKEKFNAKYMGEIKNFLGMEVKRNEDTLELKQTKMIEKILTKFKMDECNGIKTPMERNYNIEIKDNTEVLDVPYRELIGSLIYLTVTTRPDLTFAVSYLSRFLDKPNEELWKAGKRVVRYLKETKEKGLLFKKTNDNNLYGFSDADWAGDRSDRKSVSGGIILQGQNPIAWFSKKQQCVTLSSAESEYVAAASLAQEIVNLKGICKHLGCDVNAVLFVDNKSAISMAKNYENSKRTKHIDIRFHYIKDLVVNKVISIEHICTNENLADVMTKSLSTDKFYKCIDKFLC

Uniprot

O96968   A0A146L6N5   A0A0A9XG27   A0A0A9Z0I6   A0A146KTS1   A0A1B6DFK3   + More
A0A0A9WLY1   A0A146LV28   A0A224XA26   A0A0T6AT79   A0A182GA29   A0A182GSW5   A0A1Y1L115   J9KJ72   A0A0J7K6U3   A0A182G1G7   A0A182H4X3   A0A1W7R6I5   A0A023F102   A0A1Y1MQF0   A0A151S6I6   A0A151QZS0   A0A1W7R6C3   A0A151RAL1   A0A034VP82   A0A151RCT9   A0A1W7R685   A0A1Y1MJE9   A0A182GGE6   A0A2R6RYD4   A0A2N9I6N4   A0A068B703   A0A0A9W6B0   A0A087SVE4   A0A1B6C2D3   Q9ZRJ0   A0A2N9ETC8   A0A151QNH6   A0A151T355   A0A2N9H4V1   A0A2N9FQJ1   A0A0A9ZBW6   A0A2N9FZ01   A0A2N9IGN4   A0A151R6U8   A0A2R6QHR4   A0A2N9GA80   A0A2K3N1R3   B8YLY4   A0A2N9HKJ4   A0A1Y1LCN3   B8YLY5   B8YLY6   H6U1F0   A0A2N9EE21   A0A151THM1   A0A151R2G6   A0A151TKT1   A0A2N9I9F7   B8YLY3   B8YLY7   A0A2N9I8Q5   A0A151TNK0   A0A151SDY6   A0A151RJN4   A0A1W7R6A3   A0A151UBW1   A0A2N9IGN3   A0A151UC72   A0A251VAZ6   A0A151UCJ8   H6U1E9   A0A2N9H6B2   A0A0A9W6J9   A0A0A9WDS7   A0A0J7K6W1   B1N668   A0A2Z6N0M9   A0A2B4R8Q4   A0A2N9FPD9   A0A2N9H0T6   T1PKV2   A0A151TVS9   A0A251V331   A0A224XJ98   A0A2K3NXK0   A0A2N9FMR2   A0A2N9FWL6   Q6L3N8   A0A2N9GLP2   A0A1Y1NGN0   Q967L5   A0A2N9I0Q5   A0A2N9ISP1  

Pubmed

10333565    26823975    25401762    26483478    28004739    25474469    + More
22057054    25348373    29661190    8624443    24500806    28382043    19656907    22427337    28538728    18339939    11319273   

EMBL

AB014676    BAA74713.1    GDHC01015802    JAQ02827.1    GBHO01027564    JAG16040.1    + More
GBHO01004832    JAG38772.1    GDHC01019310    JAP99318.1    GEDC01012841    GEDC01000503    JAS24457.1    JAS36795.1    GBHO01035173    JAG08431.1    GDHC01007058    JAQ11571.1    GFTR01008662    JAW07764.1    LJIG01022881    KRT78250.1    JXUM01155348    KQ572178    KXJ68066.1    JXUM01085595    KQ563513    KXJ73717.1    GEZM01072005    JAV65635.1    ABLF02041793    LBMM01012492    KMQ86193.1    JXUM01136904    KQ568499    KXJ68982.1    JXUM01025857    KQ560736    KXJ81076.1    GEHC01000878    JAV46767.1    GBBI01004033    JAC14679.1    GEZM01028916    JAV86196.1    KQ483456    KYP50361.1    KQ484324    KYP35753.1    GEHC01000928    JAV46717.1    KQ483890    KYP39660.1    GAKP01015342    JAC43610.1    KQ483843    KYP40337.1    GEHC01000966    JAV46679.1    GEZM01032204    JAV84770.1    JXUM01011189    KQ560325    KXJ83029.1    NKQK01000002    PSS35035.1    OIVN01004879    SPD19723.1    KF740825    AIC77183.1    GBHO01040663    JAG02941.1    KK112142    KFM56833.1    GEDC01029908    JAS07390.1    D83003    BAA11674.1    OIVN01000557    SPC82046.1    KQ485623    KYP31853.1    CM003610    KYP61490.1    OIVN01002854    SPD06945.1    OIVN01001052    SPC89229.1    GBHO01002761    JAG40843.1    OIVN01001309    SPC92453.1    OIVN01005657    SPD23465.1    KQ484038    KYP38095.1    NKQK01000016    PSS08126.1    OIVN01001666    SPC96375.1    ASHM01015075    PNX96991.1    FJ544853    ACL97384.1    OIVN01003569    SPD12194.1    GEZM01063091    JAV69316.1    FJ544854    ACL97385.1    FJ544856    ACL97386.1    JN402333    AFB73912.1    OIVN01000036    SPC73022.1    CM003608    KYP66486.1    KQ484186    KYP36645.1    CM003607    KYP67664.1    OIVN01005059    SPD20680.1    FJ544851    ACL97383.1    FJ544857    ACL97387.1    OIVN01005024    SPD20514.1    CM003606    KYP68607.1    KQ483417    KYP53032.1    KQ483702    KYP42748.1    GEHC01000959    JAV46686.1    CM003603    KYP76810.1    OIVN01005591    SPD23209.1    KYP76811.1    CM007892    OTG31811.1    KYP77007.1    JN402332    AFB73911.1    OIVN01002904    SPD07378.1    GBHO01040573    JAG03031.1    GBHO01040574    JAG03030.1    LBMM01012645    KMQ86082.1    EF094939    EF094940    ABO36622.1    ABO36636.1    DF973299    GAU24969.1    LSMT01001145    PFX12880.1    OIVN01001022    SPC88819.1    OIVN01002680    SPD05612.1    KA648745    AFP63374.1    CM003605    KYP71150.1    CM007893    OTG30017.1    GFTR01008327    JAW08099.1    ASHM01002084    PNY07765.1    OIVN01000991    OIVN01001835    SPC88370.1    SPC98114.1    OIVN01001534    SPC95017.1    AC149291    AAT38758.1    OIVN01002055    SPD00174.1    GEZM01005617    GEZM01005616    GEZM01005615    GEZM01005614    JAV96040.1    AY009101    AAK12626.1    OIVN01004867    SPD19656.1    OIVN01006233    SPD28466.1   

Proteomes

UP000069940    UP000249989    UP000007819    UP000036403    UP000075243    UP000241394    + More
UP000054359    UP000236291    UP000215914    UP000225706   

PRIDE

O96968   

Pfam

PF00665   rve        + More
PF07727   RVT_2
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF13961   DUF4219
PF13358   DDE_3
PF13855   LRR_8
PF03106   WRKY

Interpro

IPR036397   RNaseH_sf        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR038717   Tc1-like_DDE_dom       
IPR032675   LRR_dom_sf       
IPR036576   WRKY_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003657   WRKY_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF118290   SSF118290       

Gene 3D

3.30.420.10     2.40.70.10     2.20.25.80     3.80.10.10    

ProteinModelPortal

O96968   A0A146L6N5   A0A0A9XG27   A0A0A9Z0I6   A0A146KTS1   A0A1B6DFK3   + More
A0A0A9WLY1   A0A146LV28   A0A224XA26   A0A0T6AT79   A0A182GA29   A0A182GSW5   A0A1Y1L115   J9KJ72   A0A0J7K6U3   A0A182G1G7   A0A182H4X3   A0A1W7R6I5   A0A023F102   A0A1Y1MQF0   A0A151S6I6   A0A151QZS0   A0A1W7R6C3   A0A151RAL1   A0A034VP82   A0A151RCT9   A0A1W7R685   A0A1Y1MJE9   A0A182GGE6   A0A2R6RYD4   A0A2N9I6N4   A0A068B703   A0A0A9W6B0   A0A087SVE4   A0A1B6C2D3   Q9ZRJ0   A0A2N9ETC8   A0A151QNH6   A0A151T355   A0A2N9H4V1   A0A2N9FQJ1   A0A0A9ZBW6   A0A2N9FZ01   A0A2N9IGN4   A0A151R6U8   A0A2R6QHR4   A0A2N9GA80   A0A2K3N1R3   B8YLY4   A0A2N9HKJ4   A0A1Y1LCN3   B8YLY5   B8YLY6   H6U1F0   A0A2N9EE21   A0A151THM1   A0A151R2G6   A0A151TKT1   A0A2N9I9F7   B8YLY3   B8YLY7   A0A2N9I8Q5   A0A151TNK0   A0A151SDY6   A0A151RJN4   A0A1W7R6A3   A0A151UBW1   A0A2N9IGN3   A0A151UC72   A0A251VAZ6   A0A151UCJ8   H6U1E9   A0A2N9H6B2   A0A0A9W6J9   A0A0A9WDS7   A0A0J7K6W1   B1N668   A0A2Z6N0M9   A0A2B4R8Q4   A0A2N9FPD9   A0A2N9H0T6   T1PKV2   A0A151TVS9   A0A251V331   A0A224XJ98   A0A2K3NXK0   A0A2N9FMR2   A0A2N9FWL6   Q6L3N8   A0A2N9GLP2   A0A1Y1NGN0   Q967L5   A0A2N9I0Q5   A0A2N9ISP1  

PDB

3S3O     E-value=1.68932e-08,     Score=146

KEGG

102464564    no KO assigned | (RefSeq) Mir3307, bmo-mir-3307; microRNA 3307

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0004491   GO:0004519   GO:0003964   GO:0003700   GO:0043565   GO:0016020   GO:0022857   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR11439  

Subcellular location

Nucleus  

Length:

1156

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02152

Exp number, first 60 AAs:

0.01981

Total prob of N-in:

0.00107

outside

1  -  1156

 

 

Pi

490.659689

Theta

219.433936

Tajima's D

3.898245

CLR

0

CSRT

0.998250087495625

Interpretation

Uncertain