Silkworm Genome Informatics Database

Gene

KWMTBOMO16067

Pre Gene Modal

BGIBMGA004577

Annotation

scavenger_receptor_type_C_precursor_[Bombyx_mori]

Location

Bomo_Chr27(-):8038698-8053164 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.055

CDS

ATGACGCATCACGATGGCGCTTGGCTCATGACGTTCTGCCTCCCGAACTACAGATTAGAGGGTTCAGAAGTGTTATACTGCAACGGATACAGATGGAATAGCACTGCGCCTAAATGCGTTGAGATGAACAACAACGTAACAACGATCAAGTACAGTTGCGACTTCGAAGAGGACCTCTGCGGTTGGATACAGGACGAGTTCCACGATTTCGATTGGAAGCGACTGAACACGAAAACTCCGAGCTCCTTTACGCTTACCGGACCGTGGTTTGATCACACGTACGGCTCCAGAGGAAAGGGCCATTTCATGTATATCGAGAGTACTGGGCGTTTCATTAACGATACAGCCCGACTTTTATCGCCGATTTACGATTCGGCCATAGCGAAGGACGGATGTTTTCAGCTTTATTATCACATGTATGGAAGATCATTAGGAGGCCTTAGGGTATACCAAAAACCGGACAGCGTCGATTTAATGACGATGCTGGCTTCAGAGGAACAGCGAAAGGATTACATTATTTTTGAAAAGTGGGGCGAACAAGGTGACCTCTGGCTTTCCGCTGCTCCACGACTAAAGGACTTTAACGAAGACTTTCAGATAGTGATCGAAGGAATCCGAGGATCCAGTTTCATGAGCGACCTGGCTATTGACGATATTTCCGTGTTGAGAGGACAGAAGTGCGTAGACGCAGCGGCGCATGCAATCACCCCCTCTCCTTATAAAGCCGACTCTTGCGTCGGTCGATGCTTCCAAAATATAACTATCACAAGAGGCTGTGGTTGCGACGGAGACTGCGTCATCTATGGCTACTGCTGTCAAGACTTCGTAGATCTATGCATCGAAAAAGATCCCGAAACAACAGTGATTGCCGAAACTGGTTCGACCGTTGCATTACCGCAAACACAGAAACTAGTAGCTTCTACAACCAACGCTACAACTTCAACTTCAACCACAACGACGACTACACCCAAACCCATTGTTATACTTTCAACTAAAACTACCACTACTACTGCTTCTCCCAAACCTACGACTCCCACTACCACCAGTACTAAGACTTTTCCTACTATTCCCACAAGGACCACTACTATCACAGTCAGTAAAACTCCAAAAACCAGTACCAAAACGACCATAGCCAGACGTTCCTCTAGCCCATCCCAGAAACAGACCACCAAGGTCCTTAAGCCTACGACTCAGTCCAGTTCCATCACACCTAAGAGTGCAACTCGTAAGGTGACGTCTGTCGCTTCGACCACAGTTGGGAGTAAAAAATTAACATCCAGCACTACAGTAAAACCTGCTAGTACCAGCAAAAAGGTTACTGAAAAACAGTCTTTTACCAAGAAGATGACGGTGGACGTTTTTGTTGCGAAGAAATCGAAAGGAGCCTCAAAAACACTGCAAACGTCTGGCATAATAGTTGGTGTGTTGTTTTGTGTATTTGCGTTGGTCGGATCCGTGGTGGCTTGGCGACGTTACGGCGGCATGATGATCGTTAGAAGGTTGAGAGGTCAAATCGCGAATGACCCTGAAGTGCGCTATCTGAGTGCCCATATGGACGATTGA

Protein

MTHHDGAWLMTFCLPNYRLEGSEVLYCNGYRWNSTAPKCVEMNNNVTTIKYSCDFEEDLCGWIQDEFHDFDWKRLNTKTPSSFTLTGPWFDHTYGSRGKGHFMYIESTGRFINDTARLLSPIYDSAIAKDGCFQLYYHMYGRSLGGLRVYQKPDSVDLMTMLASEEQRKDYIIFEKWGEQGDLWLSAAPRLKDFNEDFQIVIEGIRGSSFMSDLAIDDISVLRGQKCVDAAAHAITPSPYKADSCVGRCFQNITITRGCGCDGDCVIYGYCCQDFVDLCIEKDPETTVIAETGSTVALPQTQKLVASTTNATTSTSTTTTTTPKPIVILSTKTTTTTASPKPTTPTTTSTKTFPTIPTRTTTITVSKTPKTSTKTTIARRSSSPSQKQTTKVLKPTTQSSSITPKSATRKVTSVASTTVGSKKLTSSTTVKPASTSKKVTEKQSFTKKMTVDVFVAKKSKGASKTLQTSGIIVGVLFCVFALVGSVVAWRRYGGMMIVRRLRGQIANDPEVRYLSAHMDD

Uniprot

H9J4Y7 B5BSX6

Pubmed

19121390 18840462

EMBL

BABH01025688 AB436164 BAG70411.1

Proteomes

UP000005204

PRIDE

H9J4Y7 B5BSX6

Pfam

PF00084   Sushi        + More
PF01033   Somatomedin_B
PF00629   MAM

Interpro

IPR013320   ConA-like_dom_sf        + More
IPR035976   Sushi/SCR/CCP_sf
IPR000436   Sushi_SCR_CCP_dom
IPR001212   Somatomedin_B_dom
IPR036024   Somatomedin_B-like_dom_sf
IPR000998   MAM_dom

SUPFAM

SSF57535   SSF57535        + More
SSF90188   SSF90188
SSF49899   SSF49899

CDD

cd00033 CCP
cd06263 MAM

ProteinModelPortal

H9J4Y7 B5BSX6

PDB

5OJ6 E-value=1.07453e-21, Score=256

KEGG

100188966 no KO assigned | (RefSeq) Scr-c, BmSCRC, SCRC; scavenger receptor type C

GO

GO:0016021 GO:0006955 GO:0005044 GO:0030247 GO:0016020 GO:0022857 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Length:

520

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.15894

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00640

outside

1 - 466

TMhelix

467 - 489

inside

490 - 520

Pi

229.365904

Theta

18.885094

Tajima's D

0.262591

CLR

0.780456

CSRT

0.451027448627569

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics