SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16060
Pre Gene Modal
BGIBMGA004582
Annotation
PREDICTED:_forkhead_box_protein_P1_isoform_X2_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.013
 

Sequence

CDS
ATGAAATGGGTTGTATTTCCTGAGGAGTCTGGCAGGTGGGGCGGCGAGGCGGCGCGGCGACGCCGGCGCAGCTCGCCCCCGCGCCGCGCCTCTCCCCCCCGCGACCATGAGCCGCTTGCACTTGCTAGGAGCTCAGCACCGCCGTCACCGAGTGGCTCGGCCCACTCCAGCCCGGCGCCCGTGTCGTCTCCCGCGGGCAGCGCGGCCGGCACCGCTGGGGCTCGCTCTCCGCTACCACTGGTCGCACCGGACCTGCTCGCAATGCAGCTGATAGACCAGCACACGCAGCTCCAGGCCTTAATGAAACAAAGGCTCTTCCATCAGCACCAGATGCAAAAACAGCACATGTCTTCGGAGGCTGCCAAACGGCAATTAGAGCAGTCTAGACTCCAAGATCAGATCAATCTGAATCTGCTCTCGCAGCCTCACCTGCCGCCTCCAGACACTTCTCCTGGGTCACTGCATCAGCAGCTGGGCGCCCAACAACAACAGCTGGTGCAGCAACTACAGGCCGTGCAGCGTCAGTATCTGATGCACGGCCCTCTGTCAGTGCCGCCCAATGCTCCTCCAGGTCTGATGTTGTGGGGAAATGAAATGGAGGAACATCCTCTGTTCGGGAGAGGGGTCTGCAAGTGGCCCGGCTGTGATGCTCTCGCTGACGACTACCAGGCTTTCCTCAAACACCTGGAGGCGGCGCACACGCTGGACGACCGCTCGGCGGCGCAGGCGCGCGTGCAGATGCAGGTGGTGGCGCAGCTCGAGCTGCAGCTGCGGCGCGAGCGGGACCGCCTGGCCGCCATGATGCGGCACCTGCACGCCGCGCGCGACCACCACGCGCACAAGCACGGTCCGTACTCCGTCACTACTCAAATCCGTCAAATAACTATAACTTCAGGAGGCCCGAGCGAGGGGACATCACCGGGGCCCGTTAGAAGACGCGTCTCCGACAAGTCAGGAGTCGCCATTGCCGGAGAGATCCAACGGAACCGAGAGTTCTACAAGACGGCAGACGTGCGACCTCCGTTCACGTACGCGTCCCTCATACGGCAGGCCATAATCGAATCTCCCGATAAGCAGTTGACTCTGAACGAGATCTACAACTGGTTCCAGTCGACATTCTGCTACTTCAGGCGCAACGCGGCCACTTGGAAGAACGCAGTGCGTCACAACCTGTCGCTGCACAAATGCTTTATGCGCGTCGAGAACGTGAAGGGAGCCGTGTGGACGGTCGACGAGGTCGAGTTCTACAAGCGGCGCCCGCAGCGAGCCGCGCACGCGCCGCCGCCCATGCACCACGCCGGGTTCATGGGAGCTCAAAGCCCACCAATGATGACAAGTCCTCATGGCTACAGTGAAGCGCTGAAAAGAAATCTCCAGGGGATGATGGAAGATTGCAACTTGTCCTACATGTCCGGTGAGGACCACATGATGCAAACCGAGGACTATCCGTCTTCGCACGAGGAGTATAGCCGACCCCCAATACTGAACGGCTACGGCAGCAGTTCATCCCATGAGGTGAAGGCCGAAGACTTGAGCGCTAATGACACACAGGATATTAAACCCAATATATACGCGCTTAAAAACGAGATTCAAGCGTCTGATTACTCTAATAAAGCCGGCGACTACTCCAACAAGGAGTCTTCGAGCAATCGTTCCGGCGAGGGAAGCAGTTACGACGATTACCGTCCCGAAGACAGATACCGTCCCTCCATATCCCACATCAAGGACGAAGCCGAGAACCTCTCACTGAACGAGCAAAGATCTGAAAAGTAA
Protein
MKWVVFPEESGRWGGEAARRRRRSSPPRRASPPRDHEPLALARSSAPPSPSGSAHSSPAPVSSPAGSAAGTAGARSPLPLVAPDLLAMQLIDQHTQLQALMKQRLFHQHQMQKQHMSSEAAKRQLEQSRLQDQINLNLLSQPHLPPPDTSPGSLHQQLGAQQQQLVQQLQAVQRQYLMHGPLSVPPNAPPGLMLWGNEMEEHPLFGRGVCKWPGCDALADDYQAFLKHLEAAHTLDDRSAAQARVQMQVVAQLELQLRRERDRLAAMMRHLHAARDHHAHKHGPYSVTTQIRQITITSGGPSEGTSPGPVRRRVSDKSGVAIAGEIQRNREFYKTADVRPPFTYASLIRQAIIESPDKQLTLNEIYNWFQSTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRAAHAPPPMHHAGFMGAQSPPMMTSPHGYSEALKRNLQGMMEDCNLSYMSGEDHMMQTEDYPSSHEEYSRPPILNGYGSSSSHEVKAEDLSANDTQDIKPNIYALKNEIQASDYSNKAGDYSNKESSSNRSGEGSSYDDYRPEDRYRPSISHIKDEAENLSLNEQRSEK

Summary

Pfam
PF00250   Forkhead        + More
PF16159   FOXP-CC
Interpro
IPR036388   WH-like_DNA-bd_sf        + More
IPR036390   WH_DNA-bd_sf       
IPR001766   Fork_head_dom       
IPR030456   TF_fork_head_CS_2       
IPR032354   FOXP-CC       
SUPFAM
SSF46785   SSF46785       
Gene 3D
ProteinModelPortal
PDB
2AS5     E-value=3.99369e-37,     Score=390

Ontologies

Topology

Subcellular location
Nucleus  
Length:
590
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00021
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00035
outside
1  -  590
 
 

Population Genetic Test Statistics

Pi
276.687873
Theta
170.249869
Tajima's D
1.760223
CLR
0.023687
CSRT
0.84010799460027
Interpretation
Uncertain
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