SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16059
Pre Gene Modal
BGIBMGA004584
Annotation
PREDICTED:_zinc_finger_protein_891-like_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 3.554
 

Sequence

CDS
ATGGCAGATTATGATATCATACCGTGCTACGAAGATGAAGATGTGTTTCACGCAAAAAACGAGGATGTTAACACTCTACACGCGTACTACATGGCGCAGTTCAATCTAGAACTTGAAGGCAACGGTAAAAGCAAGGGAAAACACGATAACTTTAAGTACGGGACTGAAGAGAGTTTCGATTTTGAAGCATTAGATGGCTGGGATAACAATGCGCCCGCAACTAATGTCAGCGGAGCAGATTTCGAAATTATCAATGAAGTAATAGACAGTAATATCAATGAACAGAACATTAAAGAGGTCCTCTTAGATTTAGACAGTATAGACTTTGAAGATAAAAGCAACGGTAACTATGATATCGCTGTAAGCGAAAACCAAAATGGATACGGTGCTAATAATGATTATATTGATGACGAATCACTAATTGACGAGCTTTGTAGAGAAGACAACGAGTCATACGGTTTGTCACCGGATTTCAATGAAGAATATTTAGCTCCGATTAACAAGGAGAAGAGTCAACTTCCTTCAATAGAGACATTTGCAAAACGCTATTGTAACTACAACATTGAGGAAAACAACTTGCAAGACTTCAATTTGAACACGGATTTCTCTCAGGGAAGCTTCGCTGTTAACAATATAGATCATTACAGCTATCCGAATAATATATTGTATAATTTAAACAATGAAAACAAGTATGTCCTACCGGACACGCCGACCAGTTGCAGTGAATTCAATTTTGAAAGAAAGAATTCTGTTTCTGAATCCATTGGGAGTGACATTCAAAGCTCGTGTTACTACGATGAGAATTCAGAAAATTTCGACGATGAAGACTTGTTCGTGAATTTGGATAGCTTCGGACTGACACTGGAAAGGGAAAATGAAAACGTGGAAAATAAAAATCATCAAAGCTCGAAGAAACTTGAAAAGGATAAGTCGCCAGGTGAAAGGATTTGCCTATGGGAACAGTGCTACGAGAGATATTCAAATCAAAACACACTAGTTGAACACATCGAGAGATCTCACGTCAACACTTATAAAGGTAACGATAAATTTCGATTTAGACGTTTTTGTTATTAA
Protein
MADYDIIPCYEDEDVFHAKNEDVNTLHAYYMAQFNLELEGNGKSKGKHDNFKYGTEESFDFEALDGWDNNAPATNVSGADFEIINEVIDSNINEQNIKEVLLDLDSIDFEDKSNGNYDIAVSENQNGYGANNDYIDDESLIDELCREDNESYGLSPDFNEEYLAPINKEKSQLPSIETFAKRYCNYNIEENNLQDFNLNTDFSQGSFAVNNIDHYSYPNNILYNLNNENKYVLPDTPTSCSEFNFERKNSVSESIGSDIQSSCYYDENSENFDDEDLFVNLDSFGLTLERENENVENKNHQSSKKLEKDKSPGERICLWEQCYERYSNQNTLVEHIERSHVNTYKGNDKFRFRRFCY

Summary

Pfam
PF00096   zf-C2H2        + More
PF01347   Vitellogenin_N
PF09172   DUF1943
PF00094   VWD
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR001747   Lipid_transpt_N       
IPR015255   Vitellinogen_open_b-sht       
IPR015816   Vitellinogen_b-sht_N       
IPR015819   Lipid_transp_b-sht_shell       
IPR011030   Lipovitellin_superhlx_dom       
IPR001846   VWF_type-D       
SUPFAM
SSF57667   SSF57667        + More
SSF56968   SSF56968       
SSF48431   SSF48431       
Gene 3D

Ontologies

Topology

Length:
357
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03694
outside
1  -  357
 
 

Population Genetic Test Statistics

Pi
130.230328
Theta
21.998524
Tajima's D
0.393512
CLR
12.199485
CSRT
0.487825608719564
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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