Gene

KWMTBOMO16058

Pre Gene Modal

BGIBMGA004584

Annotation

putative_zinc_finger_protein_transcription_factor_lame_duck_[Operophtera_brumata]

Location

Bomo_Chr27(-):7725213-7726589      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 2.758

CDS

ATGCGCGTTCACTCTGGACACAAGCCGAACAGATGTCATCACCCGGGCTGCGGGAAGGCCTTCTCCCGTCTGGAGAACCTGAAGATCCACGTGCGGTCCCACACGGGCGAGCGGCCCTACGCCTGCCCGGCGCCGCACTGCAGGAAGGCCTTCTCTAACTCCTCGGATCGAGCGAAACATCAGCGGACCCATTTTAACGCTGTGAGTTTATTGTTATGTTATTTCAAAATTTGTTACGATACTGTTGAATATTAG

Protein

MRVHSGHKPNRCHHPGCGKAFSRLENLKIHVRSHTGERPYACPAPHCRKAFSNSSDRAKHQRTHFNAVSLLLCYFKICYDTVEY

Uniprot

A0A2A4IZG8   A0A0L7LS16   A0A0N1PGI9   A0A0N1PIA1   H9J4Z4   A0A2H1VZE5   + More
A0A212ES86   A0A3S2NE44   A0A0C9QUN0   A0A0A9XIN2   A7RU02   A0A1D2MC39   A0A1A7WXR4   E9HVZ7   A0A146WUR1   S7N9F6   D2A690   X1YV67   A0A2P2I8C9   A0A336M7J0   B4JSF1   A0A1X7TZW3   A0A336LZY2   A0A096LX21   F1QLU9   A0A3P8Y6I8   F1QB13   A0A0R4IU95   I3KPR2   A0A3P8NVZ4   A0A3P9DEG4   A0A3B3UN43   A0A3B4F4T0   A1L1Q6   A0A3Q2VLI3   A0A3Q4HB75   A0A3Q0S9C6   B4MB53   A0A0N8DMH8   Q1PHK2   A0A162R3H3   A0A0P5X6X2   A0A0P6JK72   A0A3B4WZL6   A0A0N8E1A9   A0A3P9HM98   A0A1Z5LAI9   U3K7G9   A0A3Q1IV94   A0A3B3CSC6   A0A3P8X0U1   C6KXM5   A0A3P8TYA1   A0A1I8M221   A0A3B4AHS9   A0A3Q4BV79   A0A3Q1CRF7   A0A3Q3LP82   A0A3B5ADY8   B4KBC4   B3LZ98   A0A3Q3GXQ6   A0A0N8CU51   A0A1W4ZLW4   A0A1W4ZLW9   A0A091QP27   A0A093RFM2   A0A1W4V4S4   A0A3B0JLC0   B4R1C1   B3P8H3   A0A091RZC8   B4HF96   A0A094K6C9   B4GYR7   Q962I0   Q7K9G4   A0A091GCN7   D2H2F5   G1LSS7   B4PN27   Q29AW1   A0A0S7I0U6   A0A3B5PWI8   W5LIU3   A0A3B5LZC1   A0A3B3UFB6   A0A2I0U2A1   V4BDH9   G3VFX4   H3AVX8   A0A3B1ILW8   A0A2I0MCD5   A0A3P9PEU5   A0A3B5KEF1   A0A096LST7   A0A091GXG1   C3XY75   A0A091MW11  

Pubmed

26227816    26354079    19121390    22118469    25401762    17615350    + More
27289101    21292972    18362917    19820115    23254933    17994087    23594743    25069045    25186727    16715098    17554307    28528879    29451363    24487278    19609364    25315136    25463417    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    11782407    20010809    17550304    15632085    23542700    25329095    21709235    9215903    23371554    21551351    18563158   

EMBL

NWSH01004650    PCG64818.1    JTDY01000218    KOB78237.1    KQ458842    KPJ04901.1    + More
KQ459890    KPJ19581.1    BABH01025710    ODYU01005403    SOQ46201.1    AGBW02012867    OWR44311.1    RSAL01000078    RVE48730.1    GBYB01007462    GBYB01007463    GBYB01007464    JAG77229.1    JAG77230.1    JAG77231.1    GBHO01024098    JAG19506.1    DS469538    EDO45177.1    LJIJ01001942    ODM90482.1    HADW01009317    SBP10717.1    GL732885    EFX64073.1    GCES01052690    JAR33633.1    KE163605    EPQ12830.1    KQ971346    EFA05809.2    AMQN01000151    IACF01004679    LAB70268.1    UFQT01000504    SSX24839.1    CH916373    EDV94691.1    UFQT01000265    SSX22591.1    AYCK01007466    AYCK01007467    AYCK01007468    CR847832    CT025742    CU468737    AERX01019659    AERX01019660    BC129173    AAI29174.1    CH940656    EDW58324.1    GDIP01019223    JAM84492.1    DQ438880    ABE66437.1    LRGB01000243    KZS20198.1    GDIP01077081    JAM26634.1    GDIQ01016615    JAN78122.1    GDIQ01071596    JAN23141.1    GFJQ02002772    JAW04198.1    AGTO01000642    AB353139    BAH85837.1    CH933806    EDW16852.2    CH902617    EDV43025.1    GDIP01098639    JAM05076.1    KK702719    KFQ28356.1    KL443527    KFW94817.1    OUUW01000007    SPP83025.1    CM000364    EDX14007.1    CH954182    EDV54068.1    KK937871    KFQ48322.1    CH480815    EDW43274.1    KL342558    KFZ53806.1    CH479198    EDW28186.1    AY032609    AY121651    AE014297    AAK39641.1    AAM51978.1    AAN13923.1    AJ311850    CAC51080.1    KL448089    KFO80145.1    GL192442    EFB29153.1    ACTA01058125    ACTA01066125    ACTA01074125    ACTA01082125    ACTA01090125    ACTA01098125    ACTA01106125    CM000160    EDW98082.2    CM000070    EAL27238.3    GBYX01436205    JAO45130.1    KZ506319    PKU40196.1    KB203019    ESO86629.1    AEFK01179653    AEFK01179654    AEFK01179655    AEFK01179656    AEFK01179657    AEFK01179658    AEFK01179659    AEFK01179660    AEFK01179661    AEFK01179662    AFYH01131998    AFYH01131999    AFYH01132000    AFYH01132001    AFYH01132002    AFYH01132003    AFYH01132004    AFYH01132005    AKCR02000021    PKK27341.1    KL513452    KFO87232.1    GG666472    EEN67129.1    KK837583    KFP80774.1   

Proteomes

UP000218220    UP000037510    UP000053268    UP000053240    UP000005204    UP000007151    + More
UP000283053    UP000001593    UP000094527    UP000000305    UP000007266    UP000001070    UP000007879    UP000028760    UP000000437    UP000265140    UP000005207    UP000265100    UP000265160    UP000261500    UP000261460    UP000264840    UP000261580    UP000261340    UP000008792    UP000076858    UP000261360    UP000265200    UP000016665    UP000265040    UP000261560    UP000265120    UP000001038    UP000265080    UP000095301    UP000261520    UP000261620    UP000257160    UP000261640    UP000261400    UP000009192    UP000007801    UP000261660    UP000192224    UP000192221    UP000268350    UP000000304    UP000008711    UP000001292    UP000008744    UP000000803    UP000053760    UP000008912    UP000002282    UP000001819    UP000002852    UP000018467    UP000261380    UP000030746    UP000007648    UP000008672    UP000053872    UP000242638    UP000005226    UP000001554   

PRIDE

H9J4Z4    Q1PHK2    Q962I0    Q7K9G4   

Pfam

PF01347   Vitellogenin_N        + More
PF09172   DUF1943
PF00096   zf-C2H2
PF00094   VWD

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR001747   Lipid_transpt_N       
IPR013087   Znf_C2H2_type       
IPR015255   Vitellinogen_open_b-sht       
IPR015816   Vitellinogen_b-sht_N       
IPR015819   Lipid_transp_b-sht_shell       
IPR011030   Lipovitellin_superhlx_dom       
IPR001846   VWF_type-D       
IPR030405   GLIS3       
IPR030430   GLIS1       

SUPFAM

SSF56968   SSF56968        + More
SSF48431   SSF48431       
SSF57667   SSF57667       

Gene 3D

1.25.10.20     2.30.230.10    

ProteinModelPortal

A0A2A4IZG8   A0A0L7LS16   A0A0N1PGI9   A0A0N1PIA1   H9J4Z4   A0A2H1VZE5   + More
A0A212ES86   A0A3S2NE44   A0A0C9QUN0   A0A0A9XIN2   A7RU02   A0A1D2MC39   A0A1A7WXR4   E9HVZ7   A0A146WUR1   S7N9F6   D2A690   X1YV67   A0A2P2I8C9   A0A336M7J0   B4JSF1   A0A1X7TZW3   A0A336LZY2   A0A096LX21   F1QLU9   A0A3P8Y6I8   F1QB13   A0A0R4IU95   I3KPR2   A0A3P8NVZ4   A0A3P9DEG4   A0A3B3UN43   A0A3B4F4T0   A1L1Q6   A0A3Q2VLI3   A0A3Q4HB75   A0A3Q0S9C6   B4MB53   A0A0N8DMH8   Q1PHK2   A0A162R3H3   A0A0P5X6X2   A0A0P6JK72   A0A3B4WZL6   A0A0N8E1A9   A0A3P9HM98   A0A1Z5LAI9   U3K7G9   A0A3Q1IV94   A0A3B3CSC6   A0A3P8X0U1   C6KXM5   A0A3P8TYA1   A0A1I8M221   A0A3B4AHS9   A0A3Q4BV79   A0A3Q1CRF7   A0A3Q3LP82   A0A3B5ADY8   B4KBC4   B3LZ98   A0A3Q3GXQ6   A0A0N8CU51   A0A1W4ZLW4   A0A1W4ZLW9   A0A091QP27   A0A093RFM2   A0A1W4V4S4   A0A3B0JLC0   B4R1C1   B3P8H3   A0A091RZC8   B4HF96   A0A094K6C9   B4GYR7   Q962I0   Q7K9G4   A0A091GCN7   D2H2F5   G1LSS7   B4PN27   Q29AW1   A0A0S7I0U6   A0A3B5PWI8   W5LIU3   A0A3B5LZC1   A0A3B3UFB6   A0A2I0U2A1   V4BDH9   G3VFX4   H3AVX8   A0A3B1ILW8   A0A2I0MCD5   A0A3P9PEU5   A0A3B5KEF1   A0A096LST7   A0A091GXG1   C3XY75   A0A091MW11  

PDB

2GLI     E-value=4.93999e-15,     Score=191

KEGG

101742924    K09232 zinc finger protein GLIS1/3 | (RefSeq) zinc finger protein GLI2-like

GO

GO:0005319   GO:0003676   GO:0000977   GO:0006357   GO:0005634   GO:0007417   GO:0000981   GO:0042593   GO:0003323   GO:1990798   GO:0005737   GO:0007525   GO:0007519   GO:0010817   GO:0045944   GO:0007520   GO:0007517   GO:0003700   GO:0006355   GO:0001227   GO:0010454   GO:0001649   GO:0045444   GO:0001228   GO:0046872   GO:0008270   GO:0022857   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR45718:SF1   PTHR45718:SF3  

Length:

84

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.37882

Exp number, first 60 AAs:

0.00041

Total prob of N-in:

0.42384

outside

1  -  84

 

 

Pi

7.805884

Theta

17.309039

Tajima's D

-1.306542

CLR

123.57694

CSRT

0.0820458977051148

Interpretation

Uncertain