Silkworm Genome Informatics Database

Gene

KWMTBOMO16055

Pre Gene Modal

BGIBMGA009320

Annotation

hypothetical_protein_AB894_15365?_partial_[Piscirickettsia_salmonis_LF-89_%3D_ATCC_VR-1361]

Location

Bomo_Chr27(+):7667660-7673590 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.9

CDS

ATGTCAAAGTCAAGTACAGGTAGAGGTAAAAATAATAAAACACGTGAACGTTCTCCGAATCCTGGACTGTACCAACAACTTCAAGCGATTGTATCTCGCCTGAATGCGTTGGAAGACAATTCAAGGTCTGGTATAGCGACTGTTGTTGAGAGGCAGCCTGCGGTGGAGTCATCGGGATCGGCGGGCAGTGCTGTGGTGCCGTGCGTGGTTCTGGCTTCTGAGCAAAGCACGACACCGCCATTGGTGCCTACGCCGGTTCCACGAGTTTCCGCTGACGATTGCGTCGCTGCCGAGGTAGCCGGTAAAATTGTAAGCGCAATTAATGAATTGAATCTGGTAAGGCCGAACCATATTTATATATCAAACTTTGATCCCGATTTAAATGATATTAATGTTTGGTGTGATGAAGTTGATCATGCACGTGTCATTTATAGGTGGACCGATAGGGAGTGCTTATCTCATATTGGTAATTGCCTTAAAGGCGATGCTCGTGTGTGGTTAAATGAATGGGTCACCAATGACCGTAGCTGGTCTAATTTTAAACGCGAGTTTAAACCGTTGTGTCCCCGTCGGGTAGATGTTGCAAATATCCTTTTTGATGTTATGAAAACCGATTCCAACAACTATCCTACATACGCGGAATATGTTAGGCGATCTTTATTGCGTCTTCGCATAGTAAATGGACTTAGTGACGAATTAGTTTCAGCAATAGTGATCCGGGGTATCGTTGATCCACAAATTCGTGCGGCCGCTACAAACGCGAGGTTATTGCCTAACGATTTAGTTGAGTTTTTCTCCATATATGTAAAACCTACACCTCAAACAAAAACAAATCATAATACTCGTACTGTCGCTGGTCGCTTTCATAATACACAATTTTCATCACGTAAAAGAGAGCATAGTTCTAGTAGAACCGGTTGTTACGTATGTGGATCATTTGGCCATAGACAAGTGAATTGCCCTAAGCGAACGAGAAAACGTTCGCCTACTGTGAATGATAGATTCACATCTGTACCCGCTGCCAGCTCCTCTGTGCAGAAGCCTGAACCTTGTTCTTTTTGTAAAAAGCTGGGCCATAAAGTAGAGCAGTGTTTCTTTAAGCAGCGTTCTGAAGCTCGTGGAAAATCTAACGTGAATTTTTGCCGTGATACTGTAAATGACTATAGAAAAAATGATATAGCTACTGCGATCGTACAGGGTGTACCAGTCGATATCCTGATAGATAGTGGATCCACAGTCTCGCTTATGTCTGAATCAATTGTAAAACATTTTCAATGTAAACGAGTACCCTCATTTTGCGTGTTACGAGGAATTGGTGACTGTGACACTGAATCTCGCTATTTTACTACTTTGACAGTTGAGTTTCCCGAAATTACGCTAGAAATAGACTTTCAAATTGTTAGTGACAAGTTCATGAATACCCCAGTCATAATCGGTACTGACGTTTTGAATCGGGAAGGTGTCACGTATATTAGGAAAAAGGGCATACAGCACTTAACTCGGGTAGAAAAGGTTTTTACTGCGGAGACAACTGAACTTAATTCAATCCGTACCGTGAATACTTCATTAACAGGTGAAGAAAAAAATAAATTATTAGCTTTGGTACGAAAATTTTCAAAATACCTTATAACTGGTACCGCGGCCAGTACTGTTACAACTGGATCCATGCAAATTCGACTCAGCAATGAAACTCCTATTGTTTACAGACCTTACAAATTATCATTTAGCGAAAAACTTCGCGTTAGAGAAATTATTAAGGATCTTCTTGATAAAGGTGTGATTAGGGAGTCTGAATCGGAGTTCTCGAGTCCGATATTGCTAGTTAAGAAAAAGGACGGCAGTGACAGGATGTGCGTGGACTTTCGGGCTCTTAATGCGAATACTGTGAAGGATCGCTATCCATTGCCGTTAATAGACGATCACATTGACCGGTTAGGTAGCGCAAAATATTTTACAAGCCTCGATATGGCCACTGGTTTCCACCAGATTCCTTTAGCAAACGACTCCATTCACAAAACCGGCTGTGTGACACCCGAAGGTCATTTTGAATACCTTAAAATGCCCTACGGGTTAGCTAATGCCCCGGTTGTTTATCAACGTATTATAACTAATACTCTGAAAGCCTTTAGTGAGACAGGGAGGGCTTTAATCTATATCGATGATGTTTTAATACCTAGTCAGACCATTGATGAAGGCCTAAATACTCTGCGTGAAATCTTTGAAACACTAACTAAGGCGGGCTTCTCAATTAATTTAAAAAAATGCAAGTTTCTTGCTAACGAAATTGAATATTTGGGCAGAACTATCAGCAATGGTCAGGTTAGGCCGAGTACGTATAAAGTAGAAGCATTGACAAAAGCCCCGAAGCCTGGTAATGTTAAACAAGCTAGACAATTTTTAGAAGTACACACTGATGCTTCTTCTCGAGGGTATGGAGCTGTTTTACTTCAGACTCATGGGAATAATAATAAACGCGTGGTGGGATATTTTAGTAAAGTTACCCTAGGCGCCGAACCACGCTATCACTCCTATGAGCTGGAGACACTCGCTGTGGTCAAGGCTCTGCAGCATTTCAGGCACTACCTCATAGAAGTTTTGTGGAAACTGCAGCTCACCCTGAACGTTACGAAACAAAAGTCCACTCAATATTCACCTTTATATTTGTTAATTGGTAGCGATGCTGTGACGCCCGTCATTCGTTCCGTTGTACGCGATGTGGCTCTAGAAGGAACAAGTGCCAACAGAGAAACCTTACGCGAGCTTGCCCGACAAAGAGCTTCTCAACTGCTGGACAAAAACCGAAAACAGCAGGACACTCGAGTAAATGAACGGCGCAAACCCCCGCGTACTTTCCATGAAAACGACGTGGTCTTCGTGCATAAGAATAGCCAATCTGTTGGAAAGCTGGATTCTGGTATGCGTGGCCCGTACAAAATAGTGCGTGCGCTGCCACATGGACGTTATGAACTGAAGCTTCTTTCTGGCTCACTTGGGAAGACCACGGAAGCTGCTGCCGAATTTATAAGTGCGTGGCACGGAGAGTGGACGCCGGATGTGTGCACCGCATTTTTCGAGTGTGATGAGAATAGCTCTGAGGAAGGTATTGTCGCCGATTCATCACACCACCATGACGACATAGTACCTCTAGACGAACCTATTAATGCGGGCGAGGACGCTCCGCCGTCAGGAGAGGCCGTGTTAGAAGATGATGATGACATTGGAGGCGTGGCCTAA

Protein

MSKSSTGRGKNNKTRERSPNPGLYQQLQAIVSRLNALEDNSRSGIATVVERQPAVESSGSAGSAVVPCVVLASEQSTTPPLVPTPVPRVSADDCVAAEVAGKIVSAINELNLVRPNHIYISNFDPDLNDINVWCDEVDHARVIYRWTDRECLSHIGNCLKGDARVWLNEWVTNDRSWSNFKREFKPLCPRRVDVANILFDVMKTDSNNYPTYAEYVRRSLLRLRIVNGLSDELVSAIVIRGIVDPQIRAAATNARLLPNDLVEFFSIYVKPTPQTKTNHNTRTVAGRFHNTQFSSRKREHSSSRTGCYVCGSFGHRQVNCPKRTRKRSPTVNDRFTSVPAASSSVQKPEPCSFCKKLGHKVEQCFFKQRSEARGKSNVNFCRDTVNDYRKNDIATAIVQGVPVDILIDSGSTVSLMSESIVKHFQCKRVPSFCVLRGIGDCDTESRYFTTLTVEFPEITLEIDFQIVSDKFMNTPVIIGTDVLNREGVTYIRKKGIQHLTRVEKVFTAETTELNSIRTVNTSLTGEEKNKLLALVRKFSKYLITGTAASTVTTGSMQIRLSNETPIVYRPYKLSFSEKLRVREIIKDLLDKGVIRESESEFSSPILLVKKKDGSDRMCVDFRALNANTVKDRYPLPLIDDHIDRLGSAKYFTSLDMATGFHQIPLANDSIHKTGCVTPEGHFEYLKMPYGLANAPVVYQRIITNTLKAFSETGRALIYIDDVLIPSQTIDEGLNTLREIFETLTKAGFSINLKKCKFLANEIEYLGRTISNGQVRPSTYKVEALTKAPKPGNVKQARQFLEVHTDASSRGYGAVLLQTHGNNNKRVVGYFSKVTLGAEPRYHSYELETLAVVKALQHFRHYLIEVLWKLQLTLNVTKQKSTQYSPLYLLIGSDAVTPVIRSVVRDVALEGTSANRETLRELARQRASQLLDKNRKQQDTRVNERRKPPRTFHENDVVFVHKNSQSVGKLDSGMRGPYKIVRALPHGRYELKLLSGSLGKTTEAAAEFISAWHGEWTPDVCTAFFECDENSSEEGIVADSSHHHDDIVPLDEPINAGEDAPPSGEAVLEDDDDIGGVA

Uniprot

A0A146M2J2 A0A0A9X1Z8 A0A0K8URI1 A0A2W1BA98 J9JN68 A0A0J7KLK4 + More
A0A146LBK3 A0A146KXF1

Pubmed

26823975 25401762 28756777

EMBL

GDHC01004980 JAQ13649.1 GBHO01030786 JAG12818.1 GDHF01023027 JAI29287.1 + More
KZ150428 PZC70914.1 ABLF02009677 ABLF02021755 ABLF02021756 ABLF02021757 ABLF02021758 ABLF02021759 ABLF02021760 ABLF02022031 ABLF02041876 LBMM01005919 KMQ91096.1 GDHC01014659 JAQ03970.1 GDHC01018907 JAP99721.1

Proteomes

UP000007819 UP000036403

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00077   RVP
PF00665   rve
PF03732   Retrotrans_gag
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF02145   Rap_GAP
PF02037   SAP

Interpro

IPR001969   Aspartic_peptidase_AS        + More
IPR001584   Integrase_cat-core
IPR041577   RT_RNaseH_2
IPR001995   Peptidase_A2_cat
IPR012337   RNaseH-like_sf
IPR001878   Znf_CCHC
IPR021109   Peptidase_aspartic_dom_sf
IPR000477   RT_dom
IPR041588   Integrase_H2C2
IPR018061   Retropepsins
IPR036397   RNaseH_sf
IPR036875   Znf_CCHC_sf
IPR005162   Retrotrans_gag_dom
IPR041373   RT_RNaseH
IPR000331   Rap_GAP_dom
IPR035974   Rap/Ran-GAP_sf
IPR036361   SAP_dom_sf
IPR003034   SAP_dom

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756
SSF111347   SSF111347
SSF68906   SSF68906

Gene 3D

2.40.70.10 3.30.420.10 3.40.50.11210 1.10.720.30

ProteinModelPortal

A0A146M2J2 A0A0A9X1Z8 A0A0K8URI1 A0A2W1BA98 J9JN68 A0A0J7KLK4 + More
A0A146LBK3 A0A146KXF1

PDB

4OL8 E-value=8.46472e-47, Score=476

KEGG

101738461 no KO assigned | (RefSeq) uncharacterized LOC101738461

GO

GO:0008270 GO:0004190 GO:0003676 GO:0015074 GO:0005096 GO:0051056 GO:0006508 GO:0022857 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Length:

1077

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00899999999999999

Exp number, first 60 AAs:

0.00032

Total prob of N-in:

0.00040

outside

1 - 1077

Pi

269.768404

Theta

165.027065

Tajima's D

3.111156

CLR

0.52794

CSRT

0.983450827458627

Interpretation

Possibly Balancing Selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree