SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16047
Pre Gene Modal
BGIBMGA004561
Annotation
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.962
 

Sequence

CDS
ATGGTGAGATGGATCACGCCATTTGTGAAGCAGTGCTTCGTAACATCCGGTGTGGCTATCAGCATGGCGCAGTTCGGTCTCGTCTTTGGTATCACCGCGATCCTGATACCGCAGCTGCAGTCACAAAAACCTGTAATGCTGATCGACGAATCCACCGAGTCTTGGATAGCTGCTATACCTGGTTTCGCGCTGTTATTTGGTAACTTCACTATACCTACCATCATGGGCAAATATGGACGAAAAGTCGCCAACATCATCAGTGTTCTGCCCGTAATCGTCGGCTGGCTGTTAATCACAAGCGCCTCCAACACATACTTCATCTTGGCTGCAAGATTTCTTCAAGGGATCTCTATGGGAATGAGCACATCATTGGGACCGATCTTGATTGGCGAATACACCAGCCCAAAGTACCGTGGAGCGTTTTTATCGAGTCTTTGCTTAGTTATGGCGATGGCTACTTTGACGGTGCATTCTGTCGGCTCATATGTGACATGGCAATGGACTGCCTTCGTGTGTTCAGTAATAACTTTCATAGATTTATTAATTGTAATTAATTCTCCTGAATCACCTAGTTGGTTGGCCGATCAAGGGAAATATGAAGACTGCAGAAAAGTGTTTATTTGGTTGCGGGGTGATACCGAAAATGAGGAATTAGAGAAAATGATTGAGGCTAGCAAAATTGTTAGGGAGTCTAAAGCAGACGTCGTCATATCAGATACGTTCGTTAAAAATCTTAAAGCCAAATTTGCTGTTGGATTCGAAGCGTTAAGACGAAAAGAGTTTTACAAACCGATATTCGTAATGGTTCACGTTTATACTTTAGGTGAATGGGCAGGGATCAATATCCTTTCCCCTTATATCGTTGAGGTTGCAGAAGCTCTTGTAGACAAAGACAAAATGAATGTACCATTATTGGTAGTGACCGTAGATGCTCAGAGAATAATTATGAACGCTGCTGCAATATATTTTATGACAAAATTTAGACGGAGAGTAATTCTGATAAGTACAACAATGCTTTGCGTCGCTGTTTTGCTTCTTATTTCAGCTTACAGTTACGCCAAAACGTCAAACTTGTTACCATTCGATCATCCGTCCATAGGCGCGATTTTGTTACACGTTCATATGTTCACAATAGCAACAGGTTCGGTGCCCCTACCGATGACAATATCAGGCGAAATATTCCCATTACAATTCCGAAGCGTCTCGGGTGCTTTGAGCGCAGTATTCTTTTCTTTTCATCTCTTCATCACCGTAAAAACATACCGGTATTTACGCAATTCTTTAGGATTACACGGAACGTATTTGATATACGCAGCTATTGTGACTTATTGCTTGGTCGTGAGCTGGATATTTTTACCGGAGACCAAAGACAGGACTCTACAGGAAATTGAAGATGAATTTAGAGGAGGGCCTCCGACGAGGGATAGAGATGAAAATACTGCTGAGATTTTAATGGAGACGAAATAA
Protein
MVRWITPFVKQCFVTSGVAISMAQFGLVFGITAILIPQLQSQKPVMLIDESTESWIAAIPGFALLFGNFTIPTIMGKYGRKVANIISVLPVIVGWLLITSASNTYFILAARFLQGISMGMSTSLGPILIGEYTSPKYRGAFLSSLCLVMAMATLTVHSVGSYVTWQWTAFVCSVITFIDLLIVINSPESPSWLADQGKYEDCRKVFIWLRGDTENEELEKMIEASKIVRESKADVVISDTFVKNLKAKFAVGFEALRRKEFYKPIFVMVHVYTLGEWAGINILSPYIVEVAEALVDKDKMNVPLLVVTVDAQRIIMNAAAIYFMTKFRRRVILISTTMLCVAVLLLISAYSYAKTSNLLPFDHPSIGAILLHVHMFTIATGSVPLPMTISGEIFPLQFRSVSGALSAVFFSFHLFITVKTYRYLRNSLGLHGTYLIYAAIVTYCLVVSWIFLPETKDRTLQEIEDEFRGGPPTRDRDENTAEILMETK

Summary

Similarity
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
EMBL
BABH01025731    AGBW02010956    OWR47467.1    RSAL01000045    RVE50592.1    KQ460077    + More
KPJ17887.1    KQ458671    KPJ05561.1    BABH01035548    ODYU01011356    SOQ57052.1    KZ150249    PZC71836.1    NWSH01000008    PCG80953.1    AGBW02008317    OWR53759.1    BABH01035527    BABH01035528    BABH01035529    KPJ05558.1    BABH01025733    PCG80949.1    JTDY01002352    KOB71610.1    PZC71838.1    ODYU01000118    SOQ34347.1    RVE50589.1    BABH01025717    AGBW02009614    OWR50324.1    BABH01038881    NWSH01000704    PCG74683.1    KPJ17881.1    KJ439227    KZ150491    AHX25878.1    PZC70688.1    PCG74682.1    JTDY01000342    KOB77618.1    RSAL01000181    RVE44925.1    KQ458981    KPJ04505.1    NWSH01002771    PCG67556.1    NWSH01000578    PCG75536.1    PZC71835.1    KZ150133    PZC73021.1    KPJ05554.1    ODYU01007122    SOQ49615.1    ODYU01008354    SOQ51875.1    JTDY01004123    KOB68566.1    ODYU01007347    SOQ50032.1    SOQ49614.1    KPJ17880.1    PCG74684.1    KPJ05555.1    KPJ17884.1    KPJ05573.1    KOB71609.1    PCG75537.1    AGBW02009205    OWR51384.1    BABH01035543    KPJ05583.1    NWSH01001042    PCG72950.1    BABH01035544    BABH01035538    BABH01035539    KPJ17891.1    SOQ49613.1    KPJ05563.1    BABH01035469    GQ871755    ADM86146.1    BABH01025720    KPJ05559.1    FJ373021    ACQ66002.1    ODYU01012470    SOQ58795.1    JTDY01000230    KOB78170.1    KPJ05572.1    OWR50323.1    RVE44926.1    AGBW02013662    OWR43027.1    PZC70686.1    KQ460761    KPJ12541.1    KPJ05557.1    ODYU01009098    SOQ53272.1    SOQ51878.1    PCG80950.1    PCG75535.1    KQ971345    KYB27009.1    PZC71834.1    PZC71837.1    JTDY01008796    KOB64392.1    RVE50591.1    BABH01038877    BABH01038878    BABH01038879    BABH01038880    KPJ17883.1    ATLV01010625    KE524589    KFB35580.1    BABH01025724    KQ460126    KPJ17588.1    NWSH01006268    PCG63546.1    KQ459299    KPJ01871.1    AXCM01002831    GQ871756    ADM86147.1    PCG67555.1    BABH01018801    JTDY01002470    KOB71349.1   
Pfam
PF00083   Sugar_tr
Interpro
IPR005828   MFS_sugar_transport-like        + More
IPR003663   Sugar/inositol_transpt       
IPR020846   MFS_dom       
IPR005829   Sugar_transporter_CS       
IPR036259   MFS_trans_sf       
SUPFAM
SSF103473   SSF103473       
PDB
4LDS     E-value=5.26688e-17,     Score=216

Ontologies

Topology

Length:
488
Number of predicted TMHs:
12
Exp number of AAs in TMHs:
249.22362
Exp number, first 60 AAs:
29.53383
Total prob of N-in:
0.99278
POSSIBLE N-term signal
sequence
inside
1  -  12
TMhelix
13  -  35
outside
36  -  54
TMhelix
55  -  72
inside
73  -  84
TMhelix
85  -  107
outside
108  -  111
TMhelix
112  -  130
inside
131  -  136
TMhelix
137  -  159
outside
160  -  162
TMhelix
163  -  185
inside
186  -  264
TMhelix
265  -  287
outside
288  -  301
TMhelix
302  -  324
inside
325  -  330
TMhelix
331  -  353
outside
354  -  362
TMhelix
363  -  385
inside
386  -  397
TMhelix
398  -  417
outside
418  -  429
TMhelix
430  -  452
inside
453  -  488
 
 

Population Genetic Test Statistics

Pi
44.18326
Theta
43.538166
Tajima's D
-1.515692
CLR
100.416595
CSRT
0.0604469776511174
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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