Gene

KWMTBOMO16042  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004592

Annotation

PREDICTED:_calsyntenin-1_[Papilio_xuthus]

Location

Bomo_Chr27(-):7225355-7257153      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.057 Nuclear   Reliability : 1.671

CDS

ATGGCAAAATATTTGTCGGAAATCCCATATCTGGAGTTGGACGAGCCCGATGAGGGTTATCATGGGCTGATCAAGGAGAACGAGACCCTGGTCGAAGTGACTCCTCCGATCCGTGCCCGGGGACCGCTCTGTTCCTTCCTGATACTAAACAACATACATCATGGAGAGGCCCCTTTTGAGATAATGGTGATAGACGAAAACGAAGCCCGCCTCCGTGTCCGATACCCGCTGAACTGCGAGAAACGACGAAACTACAAATTCGATATTGCCGCAGTTGGTTGCGACGGCTCCTATTCCAACACTGTCCCCGTTCACATAACGGTGACAGACGTGAACGAATACGCTCCAGTCTTCAGTCAATCCGCGTACGTGAAGACCGTCGACGAGGGACGCATTTACGATGAGATCCTTCGCGTCGAAGCCACTGATAAGGATTGCACTCCGCGATATGGTGACGTGTGCAAGTACGAGATCCTTACGGACAGGAGCCAACCGTTTACTATCAACGTTGAAGGTGTGATCAGGAACACTGAGCCACTTGACTACGAGAAGTCTCACAACCACATCCTGTCGGTTGTCGCCTACGATTGCGGTATGATGCAGTCGACGCCTGTTATGGTCACAATCAAAGTTAACAAGCCCTGCAGAGCGGGATGGAAAGGAGTGGCGGAACGTGTAGATTACGCGCCGGGAACAGGTCCACTGGCCTTATTCCCCGCCGCACGTCTGGAGACCTGTTCTTCAGACGAGCGTTGCCCTGGAGTCACCAGGATCCAAGCTGCGGTCTCCTTGCAGGCCTCGCGCGTCGGCAGCGGCTGCGACAGGGATACTTATTCGCTGCATTCTCAGCGTACCATATGCGGACTCGACCCGAAGACAATTGACCTGCTACCGAGTCCTGGAGCCGGTAATGAATGGGCGAAATCATTGAAGCCCGACTCAGGTCGTGACGGCGAGCAGATGTTCGAATTCGACGGCGAAACAACATCGGCCATAGTTCCAGAGTCGGTGTTGCCTCACTCGCTGACCAGCAGCTTCTCAATCTCGACGTGGATGCGTCACGCCCCTCCCGCTGACGGCGACAAGCACAGAAAGGAACACGTTCTGTGCCTTGCCGACGACCACAAAATGAATCGCCACCACTACGCTTTGTTCGTCCGTAACTGCCGTTTGATCCTGCTCTTGCGCCGGGACTTCGGCGAGGGAGACCTCAACATATTCCGTCCTGCCGAGTGGAGGTGGAAGATACCCGAGGTTTGCGACAACGAATGGCATCACTACGCTCTGAACATCCGCTTCCCCAACGTGGACTTGTTTATTGACGGCGAACCTTACCGCTCGCTCGACGGTAAAGGGCCCGAAGTTATTGACGACTGGCCCCTGCACCCCGCGCACGGTGTCAACACCACCCTCGTCGTCGGCGCTTGTTGGCAAGGCACCGAGAAGGATATGAAGCACCACCTTCGCGGCTGGCTGGCGGGGCTGGGCGTGCTGCGTGGCGCCGCACAGCCCTCACACGCGCTCTCCTGTCTGGCTCGCTGCCGGGAGGGACTCAGTCTGGCACCGGACCTATATCTGAAGTCGGTGTCAGTGGAGGGCGACGGAGTGGCGGACGTGGAGACATTGCTGCGCCGTGTCGCGTATGGAGACGCGCGGGCCTTCCCCACTCCGGGCAGGAGGAATGTGCACGTGGCCACCACCATCACCTGCGACAACGGGCGCATCATCAAGGCCCGCCCGGCGGAGTCTTACATCATGGTGCTGGCGCCGCAGACGCCCAGCATCCTCCTGAACGGCAGTGCGGACGTGGCGCGCGACTACGCACACTTCCGCGCAGGACTCACCGTGTTCCCGGACCTCGGCGTCTCCGTCCGAGCTGCTCCCGCTCATCCACTGGCCGATGAGAATCAGAAGCTGGACTCGTGCGTGGTGTCGGTGTACCCGGCTCTGAACCCGGACCACGAGGCTTTGTCGCTGCGCGCGGCCGCAGACCTGCCGTTGCGGTACGACATCCGCGCGGCCGTCACTCGGGACGGCGTCATCCTCACCGGCGCCGACACCGTCCACAACTACCAGAAGGTGCTTCGCGAAATCGAGTACAGCAACAAGAAGCCGGCCTACTACCTGAACCGCGTGTTCAAGCTGACCTGCTCAGAGCTCAACGGTCGATTCACGAGCAACGAATATGTACAAACCTTAACTGTGGTCCACCCTCATATGTCGGCCGCTAACGAGGTGGCCTCTCGGGAGCTACCCAGCGGCATCGCGGACAAGGCTGACGTCGCCAGAGAATCAGTGCCGGACCGCGGCCACGCCCACGGGCACGCCGTGGCGCCGCGCGTGTACGCCGCGCACGCACAGCGCGACGCGCACGCAGCCGACGTGCCCGCGCCCCGCCTCATCGACCTGCGCCCCGAGCAGAGCGCCAACCACGTGGCTCTGCTGATCGGCGTGGTGGCCGTGGGAGTGGTGGTGCTGGCGGCAGGAGTGGGCGTGGCGCGCACCCGACGCTCCCCCCGCGCGCCCGCCGCGCCCCGCGCTCGACACGTCGACTCCGAGATGGCGTGGGACGACTCCGCCCTCACCATCACCGTCAACCCCATGGAAGAGAGCGTCCCATCCTGCGGCACGCACGTGAACGCGGCGGACAGCTCGGACGGCGAGTCCTGCTCCGACTCGGACTCCGAGCATCACGACTCCTCCGACGAAGACGACGAAGTGATGCCCAACAAACAGCACAAATACAGAAACATCAGCCAGCTGGAGTGGGACAACAGCACGATGTAA

Protein

MAKYLSEIPYLELDEPDEGYHGLIKENETLVEVTPPIRARGPLCSFLILNNIHHGEAPFEIMVIDENEARLRVRYPLNCEKRRNYKFDIAAVGCDGSYSNTVPVHITVTDVNEYAPVFSQSAYVKTVDEGRIYDEILRVEATDKDCTPRYGDVCKYEILTDRSQPFTINVEGVIRNTEPLDYEKSHNHILSVVAYDCGMMQSTPVMVTIKVNKPCRAGWKGVAERVDYAPGTGPLALFPAARLETCSSDERCPGVTRIQAAVSLQASRVGSGCDRDTYSLHSQRTICGLDPKTIDLLPSPGAGNEWAKSLKPDSGRDGEQMFEFDGETTSAIVPESVLPHSLTSSFSISTWMRHAPPADGDKHRKEHVLCLADDHKMNRHHYALFVRNCRLILLLRRDFGEGDLNIFRPAEWRWKIPEVCDNEWHHYALNIRFPNVDLFIDGEPYRSLDGKGPEVIDDWPLHPAHGVNTTLVVGACWQGTEKDMKHHLRGWLAGLGVLRGAAQPSHALSCLARCREGLSLAPDLYLKSVSVEGDGVADVETLLRRVAYGDARAFPTPGRRNVHVATTITCDNGRIIKARPAESYIMVLAPQTPSILLNGSADVARDYAHFRAGLTVFPDLGVSVRAAPAHPLADENQKLDSCVVSVYPALNPDHEALSLRAAADLPLRYDIRAAVTRDGVILTGADTVHNYQKVLREIEYSNKKPAYYLNRVFKLTCSELNGRFTSNEYVQTLTVVHPHMSAANEVASRELPSGIADKADVARESVPDRGHAHGHAVAPRVYAAHAQRDAHAADVPAPRLIDLRPEQSANHVALLIGVVAVGVVVLAAGVGVARTRRSPRAPAAPRARHVDSEMAWDDSALTITVNPMEESVPSCGTHVNAADSSDGESCSDSDSEHHDSSDEDDEVMPNKQHKYRNISQLEWDNSTM

Uniprot

H9J502   A0A2A4JJF5   A0A0N1PHV1   A0A0N0P9T4   D2A5Z8   A0A1Y1M0Q1   + More
A0A2J7QUX1   A0A067QR42   A0A1W4XLY8   A0A1B6DHN7   A0A0M9A8Q9   A0A224XAU4   J9KAX0   A0A023FAK9   T1IAQ7   A0A0K8SCK3   A0A0V0G7C1   R4WP17   A0A0K8SB61   A0A2S2PD92   A0A0A9XNU4   A0A3S2LSG9   A0A2H8TL63   A0A2A3EPE1   E2B2T1   V9ID35   A0A087ZY17   A0A310SPK8   A0A195CUA5   A0A0P4W2K2   E2A5K2   A0A195FNV6   A0A3L8DDJ3   A0A195BHY1   A0A158NQ36   A0A232F4H2   K7J2G0   A0A154PFP9   A0A195DEK8   A0A0C9Q2S1   A0A1D2N098   A0A1B6L9L5   E0VTS3   A0A1W7RAU6   N6TQZ0   A0A026WN35   T1J4B1   A0A0L7QR66   A0A3S3QCK7   A0A2P2I1R6   A0A087TLN2   E9I831   A0A0P4WXY1   A0A0P6II70   A0A0P4ZSP5   A0A0P5CET2   A0A0P5A6M5   A0A0P6HGZ8   A0A0P5AS19   A0A0P5ESS2   A0A0P5Z071   A0A0P6A6U9   A0A0N8DDT1   A0A0P5BTR4   A0A0P6GQ46   A0A0N8EGF1   A0A0P5WB75   A0A0P4WZF7   A0A0P4YGA5   A0A0P5DS34   A0A0P5UT71   A0A0P5UUC7   A0A0P4YV61   A0A0P5K1F7   A0A1E1XJ52   L7MJP4   L7LYC9   A0A224YJ64   A0A131YVL7   A0A0P5XT36   A0A3Q0IWU9   A0A164YB63   A0A0P4XR93   A0A336M9E6   A0A336KCN5   A0A084VZ51   A0A2M4CWF7   A0A2M3YZV3   A0A2M3Z007   A0A2M4A215   A0A2M4A1K9   A0A2M4A1T0   W5JGL3   A0A1Q3FAD2  

Pubmed

19121390    26354079    18362917    19820115    28004739    24845553    + More
25474469    23691247    25401762    20798317    30249741    21347285    28648823    20075255    27289101    20566863    23537049    24508170    21282665    29209593    25576852    28797301    26830274    24438588    20920257    23761445   

EMBL

BABH01025749    BABH01025750    BABH01025751    BABH01025752    NWSH01001281    PCG71858.1    + More
KQ460077    KPJ17874.1    KQ459444    KPJ00924.1    KQ971345    EFA05740.2    GEZM01044444    JAV78220.1    NEVH01010480    PNF32367.1    KK853123    KDR11089.1    GEDC01012089    JAS25209.1    KQ435711    KOX79517.1    GFTR01008372    JAW08054.1    ABLF02024920    GBBI01000215    JAC18497.1    ACPB03007402    ACPB03007403    ACPB03007404    GBRD01015327    GBRD01015326    GBRD01015325    GBRD01012092    GBRD01012088    GBRD01012087    GBRD01012085    GBRD01012084    JAG50500.1    GECL01002893    JAP03231.1    AK417416    BAN20631.1    GBRD01015329    GBRD01015328    GBRD01015324    GBRD01015323    GBRD01012091    GBRD01012090    GBRD01012089    GBRD01012086    JAG50498.1    GGMR01014735    MBY27354.1    GBHO01042711    GBHO01042698    GBHO01027690    GBHO01022288    JAG00893.1    JAG00906.1    JAG15914.1    JAG21316.1    RSAL01000017    RVE52900.1    GFXV01003081    MBW14886.1    KZ288210    PBC32901.1    GL445235    EFN89996.1    JR038733    AEY58381.1    KQ760519    OAD60007.1    KQ977279    KYN04266.1    GDRN01096955    JAI59221.1    GL436993    EFN71285.1    KQ981382    KYN42138.1    QOIP01000009    RLU18391.1    KQ976464    KYM84430.1    ADTU01022920    NNAY01000959    OXU25726.1    KQ434885    KZC10030.1    KQ980934    KYN11328.1    GBYB01008288    JAG78055.1    LJIJ01000331    ODM98716.1    GEBQ01019589    JAT20388.1    DS235772    EEB16779.1    GFAH01000126    JAV48263.1    APGK01055242    APGK01055243    KB741261    KB632413    ENN71630.1    ERL95259.1    KK107148    EZA57440.1    JH431842    KQ414784    KOC61054.1    NCKU01000050    RWS17650.1    IACF01002293    LAB67952.1    KK115780    KFM66021.1    GL761360    EFZ23272.1    GDIP01253453    JAI69948.1    GDIQ01030905    JAN63832.1    GDIP01208566    GDIP01048239    JAJ14836.1    GDIP01172327    JAJ51075.1    GDIP01206967    JAJ16435.1    GDIQ01032904    JAN61833.1    GDIP01194818    JAJ28584.1    GDIQ01265015    JAJ86709.1    GDIP01052033    JAM51682.1    GDIP01035049    JAM68666.1    GDIP01043599    JAM60116.1    GDIP01184360    JAJ39042.1    GDIQ01031904    JAN62833.1    GDIQ01029260    JAN65477.1    GDIP01088542    JAM15173.1    GDIP01252758    JAI70643.1    GDIP01229016    JAI94385.1    GDIP01153566    JAJ69836.1    GDIP01125787    JAL77927.1    GDIP01109393    JAL94321.1    GDIP01226811    JAI96590.1    GDIQ01192193    JAK59532.1    GFAA01004102    JAT99332.1    GACK01000849    JAA64185.1    GACK01008229    JAA56805.1    GFPF01006520    MAA17666.1    GEDV01005992    JAP82565.1    GDIP01067779    JAM35936.1    LRGB01000930    KZS15071.1    GDIP01239271    JAI84130.1    UFQS01000275    UFQT01000275    SSX02292.1    SSX22668.1    SSX02291.1    SSX22667.1    ATLV01018602    ATLV01018603    ATLV01018604    ATLV01018605    ATLV01018606    ATLV01018607    ATLV01018608    ATLV01018609    KE525239    KFB43245.1    GGFL01005482    MBW69660.1    GGFM01001042    MBW21793.1    GGFM01001096    MBW21847.1    GGFK01001367    MBW34688.1    GGFK01001356    MBW34677.1    GGFK01001380    MBW34701.1    ADMH02001280    ETN63226.1    GFDL01010592    JAV24453.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007266    UP000235965    + More
UP000027135    UP000192223    UP000053105    UP000007819    UP000015103    UP000283053    UP000242457    UP000008237    UP000005203    UP000078542    UP000000311    UP000078541    UP000279307    UP000078540    UP000005205    UP000215335    UP000002358    UP000076502    UP000078492    UP000094527    UP000009046    UP000019118    UP000030742    UP000053097    UP000053825    UP000285301    UP000054359    UP000079169    UP000076858    UP000030765    UP000000673   

PRIDE

H9J502   

Pfam

PF00028   Cadherin        + More
PF02210   Laminin_G_2

Interpro

IPR026914   Calsyntenin        + More
IPR002126   Cadherin-like_dom       
IPR015919   Cadherin-like_sf       
IPR013320   ConA-like_dom_sf       
IPR001791   Laminin_G       

SUPFAM

SSF49313   SSF49313        + More
SSF49899   SSF49899       

ProteinModelPortal

H9J502   A0A2A4JJF5   A0A0N1PHV1   A0A0N0P9T4   D2A5Z8   A0A1Y1M0Q1   + More
A0A2J7QUX1   A0A067QR42   A0A1W4XLY8   A0A1B6DHN7   A0A0M9A8Q9   A0A224XAU4   J9KAX0   A0A023FAK9   T1IAQ7   A0A0K8SCK3   A0A0V0G7C1   R4WP17   A0A0K8SB61   A0A2S2PD92   A0A0A9XNU4   A0A3S2LSG9   A0A2H8TL63   A0A2A3EPE1   E2B2T1   V9ID35   A0A087ZY17   A0A310SPK8   A0A195CUA5   A0A0P4W2K2   E2A5K2   A0A195FNV6   A0A3L8DDJ3   A0A195BHY1   A0A158NQ36   A0A232F4H2   K7J2G0   A0A154PFP9   A0A195DEK8   A0A0C9Q2S1   A0A1D2N098   A0A1B6L9L5   E0VTS3   A0A1W7RAU6   N6TQZ0   A0A026WN35   T1J4B1   A0A0L7QR66   A0A3S3QCK7   A0A2P2I1R6   A0A087TLN2   E9I831   A0A0P4WXY1   A0A0P6II70   A0A0P4ZSP5   A0A0P5CET2   A0A0P5A6M5   A0A0P6HGZ8   A0A0P5AS19   A0A0P5ESS2   A0A0P5Z071   A0A0P6A6U9   A0A0N8DDT1   A0A0P5BTR4   A0A0P6GQ46   A0A0N8EGF1   A0A0P5WB75   A0A0P4WZF7   A0A0P4YGA5   A0A0P5DS34   A0A0P5UT71   A0A0P5UUC7   A0A0P4YV61   A0A0P5K1F7   A0A1E1XJ52   L7MJP4   L7LYC9   A0A224YJ64   A0A131YVL7   A0A0P5XT36   A0A3Q0IWU9   A0A164YB63   A0A0P4XR93   A0A336M9E6   A0A336KCN5   A0A084VZ51   A0A2M4CWF7   A0A2M3YZV3   A0A2M3Z007   A0A2M4A215   A0A2M4A1K9   A0A2M4A1T0   W5JGL3   A0A1Q3FAD2  

PDB

5ERP     E-value=1.43455e-06,     Score=128

KEGG

101743966    K22659 calsyntenin 1 | (RefSeq) calsyntenin-1

GO

GO:0016021   GO:0005509   GO:0007156   GO:0016020   GO:0045211   GO:0009986   GO:0051965   GO:0050806   GO:0008270   GO:0006096   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR14139  

Length:

928

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.36184

Exp number, first 60 AAs:

0.00028

Total prob of N-in:

0.00016

outside

1  -  810

TMhelix

811  -  833

inside

834  -  928

 

 

Pi

260.872046

Theta

165.650755

Tajima's D

2.226596

CLR

0.287179

CSRT

0.912754362281886

Interpretation

Uncertain