Silkworm Genome Informatics Database

Gene

KWMTBOMO16039

Pre Gene Modal

BGIBMGA004556

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_atrophin-1_[Bombyx_mori]

Location

Bomo_Chr27(+):7099516-7109992 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.765

CDS

ATGTCGCCGTCAGGGGGCGGCGTGGTGGGGGGCGGGACCACCCCGTTCCCCGCGGCGTCCCCCGCGGGAGGCTACACGCCGTCCCCGGCGCACACACCCTACAGCCACCACTCGTCGCCGGCTCCACCCTCGAGGACGCCCACTTACAATGACACACACCATTTCGCGCATCAGAGCGGCGGTTCGAGCGGGAGCGGCGCGTTCGGCGGCGAGCTGTCGAGCGAGATCGGCGCCGCCATCTCGTCGCCGGGGCCCGTGTCCCCCGGGATGGCGGCGCTGGACTTCGAGCCGCCCGCCGCCAGCCCCCCGCCCGAGCACAGCGACGACTCGCTCACCGACTACAACAAGACGTCCGCGGGCAGCGACATGTCCCCGGCGGCCGTGAGCTCGGCGGCGTACGGCGGAGCGCTCTACGACGGCGAGCAGAGGCTGCAGTACCCGCACGGCCTCACGCACAGCCCCGCGTCGCAGGACAAGCAGGAACACTACCACTACGGACAGGACCAAGGGAGTGGTGTTTCTGAAAGTCCACGATTAGACCAGATGCATCAGCATCAATCGATGTACCCAAGCAATTTTAATAGATCAACTCCTCCCGGGGGAGGGGGTGAAGGCTCATTTTCTCCCTTGTCGAGCGCGGCGTTCCGGCCACCAGAACATCCGCACACACCTCACACGCCTCACACTCCACATACACCTCTACATCATCAACCCGGTTCACCGAGCGATTACAGCGGAACCGTCAAACCGAAATCACAAGACGTTGCCTCCAAGTCGTTATCGGGCTTAGAGTCTTTAGTAGACCAGATTCCGTCAATAGCGGAAGGACCGGGCGCGGCGGCGGGTGTGGCGGGCGCGGGAGGCGGCCCCCCCGGCGCGGTGGTGGGCTCGGGGGAACAACCCGCCCCAGCACCTGTCCCCTCGCTGCCTGAATACGCCCCTGCTCTGTACGGTCCCTATGGAGCGTACGGTAGTGCCGCTTACGGAAATAACGGATACGGCGGTCCGTTCGTGGGATACGGCGGCGGGTGGGGCGCGGCGGTGATGCGTCCGGCGCCCGGATACCTGTCCGACTGGCAGTACCCGTACTCCGCGCCCGCCTACCCTTACAACGCGCCCTACTACGGCCCGCCGCCCGCCCACCATCAACAGGCACATTACTTATCAGCGCCGCAGCTGATCGATCTCCACAAAAACGGCGAACACTCTGCCGGGGTGCCGGCCGTGCCCTCCGTGCCCTCGGTGGGCTTCGGCGGCTTCTGTTAG

Protein

MSPSGGGVVGGGTTPFPAASPAGGYTPSPAHTPYSHHSSPAPPSRTPTYNDTHHFAHQSGGSSGSGAFGGELSSEIGAAISSPGPVSPGMAALDFEPPAASPPPEHSDDSLTDYNKTSAGSDMSPAAVSSAAYGGALYDGEQRLQYPHGLTHSPASQDKQEHYHYGQDQGSGVSESPRLDQMHQHQSMYPSNFNRSTPPGGGGEGSFSPLSSAAFRPPEHPHTPHTPHTPHTPLHHQPGSPSDYSGTVKPKSQDVASKSLSGLESLVDQIPSIAEGPGAAAGVAGAGGGPPGAVVGSGEQPAPAPVPSLPEYAPALYGPYGAYGSAAYGNNGYGGPFVGYGGGWGAAVMRPAPGYLSDWQYPYSAPAYPYNAPYYGPPPAHHQQAHYLSAPQLIDLHKNGEHSAGVPAVPSVPSVGFGGFC

Uniprot

A0A212FK72 A0A3S2TR64

Pubmed

22118469

EMBL

AGBW02008114 OWR54145.1 RSAL01000017 RVE52898.1

Proteomes

UP000007151 UP000283053

Pfam

PF03167 UDG

Interpro

IPR015637   MUG/TDG        + More
IPR005122   Uracil-DNA_glycosylase-like
IPR036895   Uracil-DNA_glycosylase-like_sf
IPR017956   AT_hook_DNA-bd_motif

SUPFAM

SSF52141 SSF52141

Gene 3D

3.40.470.10

CDD

cd10028 UDG_F2_MUG

ProteinModelPortal

A0A212FK72 A0A3S2TR64

KEGG

101735453 K20813 thymine-DNA glycosylase [EC:3.2.2.29] | (RefSeq) atrophin-1

PATHWAY

03410 Base excision repair - Bombyx mori (domestic silkworm)

GO

GO:0006281 GO:0019104 GO:0003677

PANTHER

PTHR12159

Length:

421

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05846

Exp number, first 60 AAs:

0.01752

Total prob of N-in:

0.00175

outside

1 - 421

Pi

333.34679

Theta

192.825847

Tajima's D

2.99902

CLR

0.223427

CSRT

0.978251087445628

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics