Silkworm Genome Informatics Database

Gene

KWMTBOMO16037

Pre Gene Modal

BGIBMGA004554

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_atrophin-1_[Bombyx_mori]

Location

Bomo_Chr27(+):7070006-7094330 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.707

CDS

ATGGTGATGGAGGAGGGCGATGATAAGCCCAAACCGCCCGAGAGCCAGGACGACGGGTACGAGACGAGTAACAGCGGCGAGGCGGCGCGCCGGAAGCCCTCCAGCGCGGAGGGTTCGCCCGCGCCGCCGGCCGAACCTTCCCCGCCGCCCGACCCGCCCTACGAACCAATGATGCGGTACCCGCAACCTGAGCCAGAACCCTACAGGCACTTCGAGCAGCCAGCTCCGCCCCTGGCCCAGCCTGAGCCGCAATACTTCCCCTTCCCTAAGTACAACGAGCCCTATTCGTTCAAACGTGATGACATGCCGTACGACATGAGCCAGCACCACCAAGCCCATCAGCACCAGCCCCACCAGCCGCATCCCCAGTACGCGCCACCGCAAAAACGCGACGACGATATTTATAATGGCATCAAGAGAGAGTGCGAAGATCCGTACTCGTTCGTCGAAGAAGAAACGATGTGCGCGATGCTCCAGCAGCCCCAGCATCACCTGCAACAGATGCATCCCGATCACCATCCGCACATGATGCACCCCCAGCAAATGCTGCTCAACCAGCCCAAGAAGAGAGGCAGAAAGAAGAAGATTAAAGACGAGAATGGTATGGAGATTAAAGTGGAGCCGGGCATGGAAGGCGCATTAGTTCCTCGTCCGGTGAAAGAACGGAAGAAACACGATCGCTTCAACGGAATGAGCGAAGAGGAAGTCTCAAGACGAACGCTGCCGGATCACCTCGCCGAGAACTTAGACATCATCATTATCGGCATAAACCCTGGCTTATTCGCCGCTTATAAAGGCCATCACTACGCGGGCCCCGGGAATCACTTTTGGAAGTGCCTGTATCTATCCGGCCTCACGAGGGAACAGATGAGCGCCGATGAAGATTATAAGTTGTTGAACTTCGGCATTGGGTTCACGAACATGGTGCCGAGGCCGACGAAGGGCTCGGCGGACCTCACCCGGCGCGAGATCAAGGAGGGCTCGGCCGTGCTGCTGGAGAAGCTGCAAACGTTCAGACCTAAAGTGGCCGTGTTCAACGGGAAGTTGATCTACGAAGTGTTCTCCGGGAAGAAGGACTTCTGTTTCGGGAAACAGCCAGACACAATAGCCGGGACTAATACTTACATGTGGGTGATGCCGTCGTCGTCGGCGCGCTGTGCGCAGCTGCCCCGCGCCGCCGACAAGGTCCCGTTCTACGCCGCCCTCAAGAAGTTCAGGGACTACCTCAACGGCCTAGTGGCGCACGTCGACGAATCGGAACTAGTGTTCCCGGACACGACCAGCCGGCGGCCGCAAGAGGAGATGGAGATACGCAGGTATCAAGCGAACAGATTAACAATGGAACCAGAGCCGGGAGACACGATAATACTGGAGGACGGCACTGAAGTACCGTTGAAGAAGAAACGTGGACGCCCGAAGAAAGTCAAACTGGAGAACGGGGAAACCGCTCCTCCTATACCCAGGGCTCCCAGACAACCCAGACCCCCGCCCGTATTGGACCCTAACGGAGAACAGCCTCCGAAGAAGAAGAGGGGCAGACCGAAGAAGATCAGACCAGAGGAACAACAGTTTCTGCTTCAGCAACAACAACAGCAGCAACAGCAACAGGTTCGTTCATAA

Protein

MVMEEGDDKPKPPESQDDGYETSNSGEAARRKPSSAEGSPAPPAEPSPPPDPPYEPMMRYPQPEPEPYRHFEQPAPPLAQPEPQYFPFPKYNEPYSFKRDDMPYDMSQHHQAHQHQPHQPHPQYAPPQKRDDDIYNGIKRECEDPYSFVEEETMCAMLQQPQHHLQQMHPDHHPHMMHPQQMLLNQPKKRGRKKKIKDENGMEIKVEPGMEGALVPRPVKERKKHDRFNGMSEEEVSRRTLPDHLAENLDIIIIGINPGLFAAYKGHHYAGPGNHFWKCLYLSGLTREQMSADEDYKLLNFGIGFTNMVPRPTKGSADLTRREIKEGSAVLLEKLQTFRPKVAVFNGKLIYEVFSGKKDFCFGKQPDTIAGTNTYMWVMPSSSARCAQLPRAADKVPFYAALKKFRDYLNGLVAHVDESELVFPDTTSRRPQEEMEIRRYQANRLTMEPEPGDTIILEDGTEVPLKKKRGRPKKVKLENGETAPPIPRAPRQPRPPPVLDPNGEQPPKKKRGRPKKIRPEEQQFLLQQQQQQQQQQVRS

Uniprot

A0A2H1WW80 A0A212FK72 A0A3S2TR64 A0A2W1BG32

Pubmed

22118469 28756777

EMBL

ODYU01011531 SOQ57329.1 AGBW02008114 OWR54145.1 RSAL01000017 RVE52898.1 + More
KZ150258 PZC71776.1

Proteomes

UP000007151 UP000283053

Pfam

PF03167 UDG

Interpro

IPR036895   Uracil-DNA_glycosylase-like_sf        + More
IPR015637   MUG/TDG
IPR005122   Uracil-DNA_glycosylase-like
IPR017956   AT_hook_DNA-bd_motif

SUPFAM

SSF52141 SSF52141

Gene 3D

3.40.470.10

CDD

cd10028 UDG_F2_MUG

ProteinModelPortal

A0A2H1WW80 A0A212FK72 A0A3S2TR64 A0A2W1BG32

PDB

5T2W E-value=4.40326e-62, Score=605

KEGG

101735453 K20813 thymine-DNA glycosylase [EC:3.2.2.29] | (RefSeq) atrophin-1

GO

GO:0019104 GO:0003677 GO:0006281 GO:0008270 GO:0006096 GO:0001678 GO:0005536 GO:0046835 GO:0006259

PANTHER

PTHR12159

Length:

539

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00352

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00119

outside

1 - 539

Pi

251.818991

Theta

181.078638

Tajima's D

1.207966

CLR

0.355303

CSRT

0.719214039298035

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics