SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16035
Annotation
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.545
 

Sequence

CDS
ATGGAACACGCCCGACCACCGTCAGAATTGAGTCTGGAAGGCAACTCCGTCAGCCGGGCTGACGCATGGAAGCGTTGGAGGAAACAATTTCATGTATTTTTGAAAGCATCAGGGGTGCATAAAGAAGAAGGCAGTGTGCAAGCCAGCTTGCTCATCAATTTAATTGGAACGGAAGGTTTCGATGTGTACGAGACGTTTAAGTTTTCAAATGACACTGAAAAAGATGACGTAACGGTTTTGTTAAAAAAATTCGACGAATACTTCGGCGTCAAACCAAATGTTACGTTGGCGAGATATAATTTCTACATGAGAAACCAGGAAGGCGGCGAATCCATAGATCAGTATGTGACGGCTTTGAAACTGCTGAGCAAAACCTGTGAATTTAAAACCTTAGAAGACGAATTCATTCGCGATCGGATCGTATGCGGCGTAAAAAATACGATAGTTCGCGATCGTTTACTGAGAACGGACGACTTGACGATGGACAAAGCTATTAAAATATGCCAAGTCGACGAGGTATCGGCGGACAGCAGTCGCGTATTGCAGGAGTCGCGCGGAGCGAGCGCGGAGCCGGTGCGCGTGGACGCTGTGGGCGCGCGGGTGGTGCTGGGCCACGTGCGGCGCGGGGCCGAGCCGGCGGCGCGCGAGCAGCTCGCGGCGGCCGCGGCGGTCACCGGCTGCGTGCGGTCCCGGATGGCGCGGGGCGCCCGCCGCCTCTTTCCAGTTCATCTGCGTCCAGTACTTGTCTCAGAGGACGAAAATAAATACGAGCCGGAACTGGACGATGACTGGGAGTCGTTTTATATATCTACTTTAATTGATGGTTCCAAAATCGACTCGGTGTCGCAGGATTGGTTTGAGGTCCTCCGAGGAGAATGGGGCTCGGAAAATTTTAAACTAGACTCGGGTGCAGATATCAATGTCTTATCTTTTAAGCGATTTGTGCAGTTAGGCAATAACCCTAATAACATTGTTGTAAATCATAAGGTTAAACTGCAATCTTACAGTGGCGATTTCATTCCTATTAAGGGAATTTGTAATATTAAATGGTGGTATAAAAATGTTCAATATGATCTTAAGTTTGCGATAGCTGATATTGATTGTCAAAGTGTACTGGGACTGCAGGCGTGCTTATTATTAGGGTTAATAAAAAGAATTCACGATATAAATTTCTCTAAAAATAGTGATTTGTTCACTGGGTTAGGTTGTTTACCGGGGGAATATCATATAACGGTAGATAGGGATGTGACGCCGGTGGTGTGCGCTCCGCGGAAAGTACCGTTAAGCCTTCGTGATAACTTGAAGGACGAGCTCGATAGGATGACAGAGTTAGGTGTGATTAGGAAGGTGACTCATCCGACACCTTGGGTCAACTCGTTAGTAGTAGTGGCCAAGACAAATGGTAAAATGCGCATATGCCTAGACCCGAGGCCTCTCAATAAGGCGATTCAACGTGCTCATTTTCAACTACCCACCATAAATGAGTTGGCTACCAAATTGAATGGGGCTAAATATTTTTCGGTATTGGATGCCAATTCAGGATTTTGGTCCGTAAAGCTAGATAAGGAGAGTGCCGATTTATGCACATTTATTACGCCGTTTGGGCGATATCAATATCTAAGATTACCGTTCGGACTGAACTGCGCACCGGAGGTATTCCACGCTAAATTAAAACAATTGTTAGAAGGTTTAGACGGTGTTGAGTCGTTTATTGATGATATTATTGTCTGGGGGTCCACTAGGCGAGAACATGATGTAAGACTAAATGCGTTATTTCAAAAAGCGCGAGATATTAATTTAAAGTTTAACAAAGATAAGTGTCGCATTTGTGTCGATGAGGTGACATATTTGGGACATATTTTTAATAAAGACGGAATGAAAGTAGATACGGAAAAAGTGCGGGCTGTAATCAATATGCCGGAACCTACGGATTGTAAAAGTTTAGAAAGGTTCTTGGGTGCAATTAATTATTTATCAAAGTTTATACCTAACTACTCGCAACACATATTTCCATTGACTAGATTATTGAAAAAAGATGTCGAGTGGTGTTGGGAAATAGGTCACAAAAACGCCTTTGATAAATTAAAGAAACTGATATGCGAGGCTCCGGTATTATCGTTGTTTGACGTAGGCAGTGAGGTATTGTTGTCGGTGGACGCAAGCAGCGTCGCACTTGGCGCGGTGCTGATGCAGCGCGGCCGCCCGGTCGAGTACGCGTCGCGCACACTCACCGACACACAACAGAGATACGCTCAGATTGAAAAAGAAATGTTAGCTATTGTCTTTGCTTGTGAAAAATTTCACCAGTACATTTATGGAAAAAGGTATATAGTCATAGAAACTGACCATAAACCTCTTGAAAGTATTTTTAAAAAGCCGCTCAATTCAGTCCCAGCACGCTTGCAGCGTATGATGTTAAAATTACAAGGGTACGATCTGAAAATTACTTATAAACCGGGGAAGTATATGTATATACCCGACACGTTATCACGTGCGCCTCTTCCGGATTTATATGACGATAAAATTAGTAAGGCAGTATTGAACCAATTGAAAATGGTAATTAACAATGTACCGATGTCTCAAAGCAAACTGACATTAGTTAAGAAAGAAACTAGTAAAGATGAGTATTTGAAACGTTTGTTAGTTTACATTAATGAAGGTTGGCCCGTTCATAAATATAATGTTGATAGTGATTTAAAGTATTTTTGGTCCATGAGAGACGAGCTGTACTCTGTTGACGGAGTAATTTTTAAAGATAAACAGCAACAGCATAAAACAATAATAGAAAAACAATTAAAAAGTAAAATGTATTATGACCAACATTGTAAAGAGCAGCCGGAGCTAAGTGTCGGCGATGATGTAATTATGTTAGAACATAATAATGAACGAATGCGCGGCACTGTCGTAGGCAAGGCATCTGCACCGCGTTCATACATTGTAAAAAACAAATTAGGTATATATCGACGTAATCGCCGACATTTAATTAAAAATATGCCTGATGAGAAACCTAATGTTGTGGAAAAGCTGAAGAATGATCGGCGCGACACAATAGTGATCGTATCAGACGAGTCAAGTGGGGGAGAATATGAGATGAGTGTGGATGAGGATGGTTCAGTGTACGAACCGAGTACTTTGTCATCACCTTCATCACCTCATATTTATCCGCCTACTACTCGTAGTAGAACTAAGCAGAATGCAATTAATAATAATTAA
Protein
MEHARPPSELSLEGNSVSRADAWKRWRKQFHVFLKASGVHKEEGSVQASLLINLIGTEGFDVYETFKFSNDTEKDDVTVLLKKFDEYFGVKPNVTLARYNFYMRNQEGGESIDQYVTALKLLSKTCEFKTLEDEFIRDRIVCGVKNTIVRDRLLRTDDLTMDKAIKICQVDEVSADSSRVLQESRGASAEPVRVDAVGARVVLGHVRRGAEPAAREQLAAAAAVTGCVRSRMARGARRLFPVHLRPVLVSEDENKYEPELDDDWESFYISTLIDGSKIDSVSQDWFEVLRGEWGSENFKLDSGADINVLSFKRFVQLGNNPNNIVVNHKVKLQSYSGDFIPIKGICNIKWWYKNVQYDLKFAIADIDCQSVLGLQACLLLGLIKRIHDINFSKNSDLFTGLGCLPGEYHITVDRDVTPVVCAPRKVPLSLRDNLKDELDRMTELGVIRKVTHPTPWVNSLVVVAKTNGKMRICLDPRPLNKAIQRAHFQLPTINELATKLNGAKYFSVLDANSGFWSVKLDKESADLCTFITPFGRYQYLRLPFGLNCAPEVFHAKLKQLLEGLDGVESFIDDIIVWGSTRREHDVRLNALFQKARDINLKFNKDKCRICVDEVTYLGHIFNKDGMKVDTEKVRAVINMPEPTDCKSLERFLGAINYLSKFIPNYSQHIFPLTRLLKKDVEWCWEIGHKNAFDKLKKLICEAPVLSLFDVGSEVLLSVDASSVALGAVLMQRGRPVEYASRTLTDTQQRYAQIEKEMLAIVFACEKFHQYIYGKRYIVIETDHKPLESIFKKPLNSVPARLQRMMLKLQGYDLKITYKPGKYMYIPDTLSRAPLPDLYDDKISKAVLNQLKMVINNVPMSQSKLTLVKKETSKDEYLKRLLVYINEGWPVHKYNVDSDLKYFWSMRDELYSVDGVIFKDKQQQHKTIIEKQLKSKMYYDQHCKEQPELSVGDDVIMLEHNNERMRGTVVGKASAPRSYIVKNKLGIYRRNRRHLIKNMPDEKPNVVEKLKNDRRDTIVIVSDESSGGEYEMSVDEDGSVYEPSTLSSPSSPHIYPPTTRSRTKQNAINNN

Summary

Pfam
PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
Interpro
IPR001584   Integrase_cat-core        + More
IPR041577   RT_RNaseH_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
Gene 3D
PDB
4OL8     E-value=6.53074e-53,     Score=528

Ontologies

Topology

Length:
1070
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00134
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.00003
outside
1  -  1070
 
 

Population Genetic Test Statistics

Pi
135.435752
Theta
144.512157
Tajima's D
-0.636986
CLR
402.793268
CSRT
0.213489325533723
Interpretation
Possibly Positive selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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