Silkworm Genome Informatics Database

Gene

KWMTBOMO16027

Pre Gene Modal

BGIBMGA004597

Annotation

Zinc_finger_DNA_binding_protein_[Operophtera_brumata]

Location

Bomo_Chr27(-):6533274-6536507 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.482

CDS

ATGGAAAGCATTAGTAAACTTTTCGATTCCAAATTATCTTTAAATTCAGCTTTTGTCTCAAACCTGCGTTCAGCCCTAAAAAAGGATATTGAAGATATAGTGGCTGTCGAAGTAGACCATGCATTGCAGCATTTTAAAAACGAATTAACGGCCACTACTGACTTCATTACTGCTGAGCAAAGGGACTTTAAATTGGCTATAGAAGACAAAGAAAAGCGTATTAAGTTTCTGGAAGCAGCACTTCTTAAAACTCAAACTGACCTTTCCAAGCTGCAGAGTCGCACAGCTACAATAGAAAAAATTTCAAGAGATTTAAATATTGAAATTCATGAAATACCTGAGAGTAGAAATGAAAATGTTTTGGATTTGTTTAAGAGACTGTGTGAATGTCTACGAGTTGTTATTTCCGATAATGACATTCGCGCCTGCCGCAGAGTAGCCAAGATGAATACTACCTCGGTTCGGCCACGAAATATCTTGGTAACGCTGTCTTCGCCGCGACTTCGCGATCAACTACTCTCAGCTGCTACGCGGTTTAATAAATCTTCCACCAATGAAAAATTGAGTACTACTCATCTGGGTATAAATGGTGAGCGCCGTAGGATTTATTTATGTGAACATCTATCACCAGATGCGAAAGAATTGCACAGCTTGGCCAGAAAATTTTGTTTTGAGAATAAATATAAGTATGTTTGGGTTCGCTTTGGCCAAATTTATATTCGTAAGGATGAACAATCCCCGGCTTTCCATGTAAAGAATATAGACTCGTTAAATAACTCTGTTTATGAGAAAGACACAACTGCCAACTTTTCTTATACTTTCGATGAGCACATGTACTTTAAGGATCGCATAAGTAATACGTTATCTTCTATTGTACTTGATGAGGGCGAGGTTTTTCTCAAACTTAAGCTACTTAATATTAGTAAGGGTGCTGGACCTGATCGAATACCCCCCTACTTTGTTAGGAGTTGTAGAAATGAGTTAGTTTCTCCTTTATGTAAACTTTTTAACAAATCCCTTGCTAGTGGTGTTTTCCCTAATCTATGGAAAACCGCATATATCATACCCATTCATAAAAGTGGTGATAAATCGAGATGTGAGAATTATAGACCTATAAGCATATTATCATGTTTTGCCAAAATATTTGAATCTTCAGTTTACATGTATCTTTATAATCATTTTAAACCTCTAATCTCTGAAAAGCAGCACGGGTTCTTAAAAAACAAGTCTACTATAAGCAACTTATTAGTATATAAGGATTTTCTTTTGTCTTAA

Protein

MESISKLFDSKLSLNSAFVSNLRSALKKDIEDIVAVEVDHALQHFKNELTATTDFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQSRTATIEKISRDLNIEIHEIPESRNENVLDLFKRLCECLRVVISDNDIRACRRVAKMNTTSVRPRNILVTLSSPRLRDQLLSAATRFNKSSTNEKLSTTHLGINGERRRIYLCEHLSPDAKELHSLARKFCFENKYKYVWVRFGQIYIRKDEQSPAFHVKNIDSLNNSVYEKDTTANFSYTFDEHMYFKDRISNTLSSIVLDEGEVFLKLKLLNISKGAGPDRIPPYFVRSCRNELVSPLCKLFNKSLASGVFPNLWKTAYIIPIHKSGDKSRCENYRPISILSCFAKIFESSVYMYLYNHFKPLISEKQHGFLKNKSTISNLLVYKDFLLS

Similarity

Belongs to the mitochondrial carrier (TC 2.A.29) family.

Uniprot

A0A0L7L0X6 A0A2H1WBH0

Pubmed

26227816

EMBL

JTDY01003733 KOB69075.1 ODYU01007238 SOQ49844.1

Proteomes

UP000037510

Pfam

PF03258 Baculo_FP + More
PF00153 Mito_carr

Interpro

IPR002067   Mit_carrier        + More
IPR004941   Baculo_FP
IPR018108   Mitochondrial_sb/sol_carrier
IPR023395   Mt_carrier_dom_sf
IPR013083   Znf_RING/FYVE/PHD
IPR011011   Znf_FYVE_PHD
IPR036691   Endo/exonu/phosph_ase_sf

SUPFAM

SSF103506   SSF103506        + More
SSF56219   SSF56219
SSF57903   SSF57903

Gene 3D

1.50.40.10 3.30.40.10 3.60.10.10

ProteinModelPortal

A0A0L7L0X6 A0A2H1WBH0

KEGG

NA

GO

GO:0016021 GO:0022857

Length:

424

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08045

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.00317

outside

1 - 424

Pi

67.978272

Theta

138.510203

Tajima's D

-1.189193

CLR

0.000009

CSRT

0.106594670266487

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree