Silkworm Genome Informatics Database

Gene

KWMTBOMO16025

Pre Gene Modal

BGIBMGA004545

Annotation

PREDICTED:_transcriptional_activator_cubitus_interruptus_[Bombyx_mori]

Location

Bomo_Chr27(+):6495178-6515704 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.074

CDS

ATGTGGCAACCAGAATCCACAGATATCAATCACCATGTAAATACCGTCACCCATCTTGAGACGCAAGGCTTGGAGTACTTAAGTGCAGCAAGGAGCTTACACCCAGAGCTTCATGCCGGAAGCACGCTCGCGAGCCAAGACTTTCAACTTAGTTTAGATGGTTCTAGAATAGCGTCTCCAACGAGATTAAGGTTATCGGGCGGTGCAATCGGCGCTTCTGCGAATCGAAAACGGGCAGTTTCGTGGAGTCCGTATTCTGCGGAATCTCTAGACTTAGCTGCTGTGATCAGGGCGTCTCCAGCTAGTTTGGCAGTAAGAGCGCCGTCCGCTGCTTCCACAGGAAGCTATGGACATCTTAGTGCAGGAGCGATATCTCCAGCCCTTTCCCTCTCCCATGCTTCGTTGGCCCAACAATTGCTGGCTAGAGGAGGAGTGGTGGGAAGCAGTGGAGTACTGGCCGGAGGTGTACTGCTAGATCCTGCGCATCAACAGGCGGCCGCAGCTGCTGCTCATCATGCTGCTCATGCCCATTTGGTAGCTGGCATTCATAGATCTCACATATCGTCACCGACACAATTGCTCATGGGTCCTGTGGATGTCAGACAGGGCTTGGGACTAGACGGAACTCCCCCTCAGCACCTCCAGCAGCCTTCGCAGCAACCTGAAATCACTAGTGTTATGGAAGCTGATAGTGCTACAGGGCTGATGCAGCGCAAGTCGCCTCAGGGTATTCTCACGCACCGAGATAACGTGAGCAATAAGCCGCTCTCGGCCGCCGCGGAGAGCACAGTCCACGACGGTCTCGACTCCAAAGACGAGCCAGGAGATTTTATCGAAACCAATTGTCATTGGGTGGACTGCAAGCTTGAATTTCCCACTCAAGATGATTTAGTGAAGCATATTAATACGGACCACATACACGCCAGCAAGAAGGCGTTCGTCTGCCGCTGGGTCGGCTGTTCCAGAGACGAAAAGCCTTTCAAAGCCCAATACATGCTTGTCGTTCACATGAGGAGGCACACTGGAGAGAAACCTCATAAGTGCACTTTCGAAGGCTGCTGCAAAGCGTACTCCAGGCTGGAAAACCTGAAGACCCACCTCCGGTCGCACACTGGAGAGAAACCGTACACCTGCGAGTATCCGGGGTGCGCTAAAGCTTTCTCCAACGCGAGCGACAGAGCTAAACATCAAAACAGAACGCACAGCAATGAGAAACCGTACGTCTGTAAAGCGCCGGGCTGCACCAAGAGGTACACCGACCCCTCCTCGCTCCGGAAACACGTGAAAACCGTTCACGGAGCCGAGTTCTACGCGAGTAAGAAACATAAGGGTTGCACGAGAGGTGACGACTCCGCGGAGTCTGGCGGTGGTGGCGCAGGGTCGTCTCCTCGTTCGGAGGAAGGCGGAGTACCACCCGCGATCCGGGGTCACACATCATCGGCGTCCGTCAAGAGCGAGAGTCCCGCGTCGCCCATACCGCACGGCTTGCACACTTCCGCCCACCAGTTGTCTGCGCAATGCGGTGGGGAGCTGGACTTCGGCGGTGGTCTGGGAGGATACCGGGATGAAAACGGCCTGCCGTACTTTAGATTAGACGGAGAGATCGAGCAGGAAGTGGTCGGTGAAGTGGGACAGTTGCCGCTGATGCTGCGAGCTATGGTCGCTATCGGCGAGCCCCGCGCCGCCCCGCACGCCCCCCGCCTCGGGAACAAGATGGCGCTCGCGAGGATGCCGCCGCCACACGCCGACCTCGGAGGAGGCGGAGTCACGGGGAGGACAGAGCTGGGTAGCACCAATGTTGGGGTGGAATTGAAGACTGGGGCCTCTAACACGAGGCGCGATTCTGGAATCTCATCGGGCAGCAGCCTCTACAGCGCCAGGTCTTCGGATATATCGCGTAAAAGCAGTCAAGCATCAGTTGTGTCGGGAGCAGTGGTAGGAGGAGTCGGGGCGCAACGTCTAGTCGCGCACCACACCGCGGCGTACGACCAGCTCTCTCCCGACAGCAGTCGAAGATCTAGTCAAGTTTCGTGTGCGGGATACGCGCCTCCGCCCTCATCAGCCCTGGCCGCTGTGCAGGCCGTCAGGACATCGCAAGGGAATCAGGCCATCCTACTCCGGGGAGTCACATGTTCTGAAGTCAGGGCAGAGGAACTAGCGTTGGAGTTGGATCCGAACGTTCAAGTGAAAGAAGAGGCGAGAAGACTCTCGGAGCAGTCGAACTTAAGTGATCAGACCCAAGGCTACCAGCCGTACCCTTGCGGAACCGACGGTTTGGGCGACGCTCCGTTCCCGTTCAAAACTGAATGCGACCAGGAAACTGTGACGTATAAGGAGTCACGGTCCAATTCCACCAGCACCGTGGTGGTCACCACGGCACAGATCCACCACCCCAACCAGGAAGTCAACTTGGAACAGGTGGCTGAAGGTGAAATGGTGGAGAATAAGCTGGTGATACCCGACGAAATGATGCAATATCTTAACCAATCAATATTGGCAACCGAAGCGGAAACATCAGCTAAAACGGACTCCGCAAATCGACCTAACACAGAACCGAGTCTAGATAAGGACAGTGCTACCAAAGACAATACCACAAACGAACAACAAAACACTAATAATTCCAGTGATAAAATCAGTGACGTAGCGACCAGTGACGATTCTCTACTTAAAAATCTAGGTGCCATAGGAAGTGATCTCAATATAAGTGATATTCAAGTCGATTTAAGGTCGTTAGACGTTAGTATGTCGGGCAACAGCGGCTCTCTTCTGGCTGTCAAAACACCCGAAGATAAAACTCCTCTACAAGAACAAGTCACCCCGGAAGTCAAAGCAGAGAACAAAGAAAGGGAAACGAAGAAATCGGATCCGAATCCGTTGCAATCACTGCAAACGATGACAGCCAACCAGACTGAACAATCCAATAAAATTAGGGCTAATGCTCAGAAACAGAATAAGACGAATACTAAGACTATAATGAGTCAAAATATTTTGAGTCCGCAGAACCTGCCTCACAGCATGTTGAGTCCACAAAGCCTCCCGCACAGTGCAATGAGTCCACAAAGCGTTATGAGTCCGCACAATATCCCACAAAATATTATGTCCCCTCCCAGTGCTTATAACGTGATGAGCCCCCAAAGTGCGATGAGTGTAATGTCCCCGCAGCATAATGCCATGAGCCCACAAAGCATGCAAAGTCTCATGAGTCCACAGATACCCAACCAAATAATGTTGAGCCCTCGTCACAATAACGTCAGTAGCCCCATGTCACAGAATATGGCTAGTCCCATGATGAACATGGCTAGTCCGATGGGACAGACCATAGCCAGTCCCATGAGCCACGGTATGCCCAGCCCCATGCATCCAGGAATGCAAAGCCCAATGGGACAGGGCATGGCAAGTCCAATGATACAAAACATGCCGGTGGCTATGAACGGACCTGTGAACCCCAATCTCCAAAATCAAATGATCAACGTTAATCAACAACAAATGGCTCTCAGCTATCGGCCCAACTGTCACAGAATGCCGGCCCGGCCAAATATGCCGATGCCGAACCAGTATACGCAAAATTACAACAACAACCAACCACCACAATATCCAATGCAAAACCAAAATGTTAACGTGCACCATCAAAACGTGCAAAATTATCAAATCATGCAATCTTACAACCAGAACCAAGCACCGACGGTCAATCAAATGGTTCAAAATCAGAACGTTCATTATCCGAACCAGCCTATGATCAACTACCAACAGATGAACTTCAACCAGAACAACCGTGCTCACCCGATGCAGTCGTCTAGATCGTCCATGATGAGCGTCGACAACAGCGGCAACATGACCCGGGGTGTCATGACCAGTTACTGCGACACGCAACACCAGTGCCCGCCCGCACAGACCAATCATTACAACCAGAATGTACAGTACCCTCAGCCGCCTCCATACAATGCCGTCGTCAATAACAACGTGATGGGACCTCCACCACCGAAGAACAATCACCAATACAACCAAGCTATGATGAACAATAACCAATATTACAATCACCAGAGGCCTTACAACCAATGGGACTATCCAGGCAATCAGTTCAACAAACACAATCCACAGAAGTCCACACCGAATTCCGTGAACATGTCGACGGGAAGCCAGAAACAAGTCAAGTGCAACCGGCTGACGAACTGCAACCAAATCAAGAACGACCAGGCCGATTGCAGCATGAACAGCCTGAGGAGCCAAAACAACCAGCCCAGCGAAGTCCAAGTCTGGGACATATCTCAGTCGCAAATCGAAGCGAACAACGGAAGACGGAAGACCCAAAACAATTCAATGAGACAGGAAACTTATCAGAGAACGCTGGAGTACGTCGAGAACTGTGAAAACTGGAAGAGTTCTGAAATGGTGTCGAGCACCACGCATCCCCTGCAAGGCGATAATATGGTTGTGAATGACCTCCAGACGTCTTTGTCTTCGTTTTACGAGGAGAATCAATACCTCCAAATGATTCAATAG

Protein

MWQPESTDINHHVNTVTHLETQGLEYLSAARSLHPELHAGSTLASQDFQLSLDGSRIASPTRLRLSGGAIGASANRKRAVSWSPYSAESLDLAAVIRASPASLAVRAPSAASTGSYGHLSAGAISPALSLSHASLAQQLLARGGVVGSSGVLAGGVLLDPAHQQAAAAAAHHAAHAHLVAGIHRSHISSPTQLLMGPVDVRQGLGLDGTPPQHLQQPSQQPEITSVMEADSATGLMQRKSPQGILTHRDNVSNKPLSAAAESTVHDGLDSKDEPGDFIETNCHWVDCKLEFPTQDDLVKHINTDHIHASKKAFVCRWVGCSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCCKAYSRLENLKTHLRSHTGEKPYTCEYPGCAKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYASKKHKGCTRGDDSAESGGGGAGSSPRSEEGGVPPAIRGHTSSASVKSESPASPIPHGLHTSAHQLSAQCGGELDFGGGLGGYRDENGLPYFRLDGEIEQEVVGEVGQLPLMLRAMVAIGEPRAAPHAPRLGNKMALARMPPPHADLGGGGVTGRTELGSTNVGVELKTGASNTRRDSGISSGSSLYSARSSDISRKSSQASVVSGAVVGGVGAQRLVAHHTAAYDQLSPDSSRRSSQVSCAGYAPPPSSALAAVQAVRTSQGNQAILLRGVTCSEVRAEELALELDPNVQVKEEARRLSEQSNLSDQTQGYQPYPCGTDGLGDAPFPFKTECDQETVTYKESRSNSTSTVVVTTAQIHHPNQEVNLEQVAEGEMVENKLVIPDEMMQYLNQSILATEAETSAKTDSANRPNTEPSLDKDSATKDNTTNEQQNTNNSSDKISDVATSDDSLLKNLGAIGSDLNISDIQVDLRSLDVSMSGNSGSLLAVKTPEDKTPLQEQVTPEVKAENKERETKKSDPNPLQSLQTMTANQTEQSNKIRANAQKQNKTNTKTIMSQNILSPQNLPHSMLSPQSLPHSAMSPQSVMSPHNIPQNIMSPPSAYNVMSPQSAMSVMSPQHNAMSPQSMQSLMSPQIPNQIMLSPRHNNVSSPMSQNMASPMMNMASPMGQTIASPMSHGMPSPMHPGMQSPMGQGMASPMIQNMPVAMNGPVNPNLQNQMINVNQQQMALSYRPNCHRMPARPNMPMPNQYTQNYNNNQPPQYPMQNQNVNVHHQNVQNYQIMQSYNQNQAPTVNQMVQNQNVHYPNQPMINYQQMNFNQNNRAHPMQSSRSSMMSVDNSGNMTRGVMTSYCDTQHQCPPAQTNHYNQNVQYPQPPPYNAVVNNNVMGPPPPKNNHQYNQAMMNNNQYYNHQRPYNQWDYPGNQFNKHNPQKSTPNSVNMSTGSQKQVKCNRLTNCNQIKNDQADCSMNSLRSQNNQPSEVQVWDISQSQIEANNGRRKTQNNSMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGDNMVVNDLQTSLSSFYEENQYLQMIQ

Uniprot

H9J4V5 A0A2H1WMM1 A0A2A4JSD4 A0A2A4JTK9 A0A3S2NQ83 A0A212EPU9 + More
A0A194QBD9

Pubmed

19121390 22118469 26354079

EMBL

BABH01025788 BABH01025789 BABH01025790 ODYU01009704 SOQ54320.1 NWSH01000695 + More
PCG74739.1 PCG74740.1 RSAL01000012 RVE53486.1 AGBW02013392 OWR43499.1 KQ459249 KPJ02305.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053268

PRIDE

H9J4V5

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J4V5 A0A2H1WMM1 A0A2A4JSD4 A0A2A4JTK9 A0A3S2NQ83 A0A212EPU9 + More
A0A194QBD9

PDB

2GLI E-value=1.21053e-71, Score=691

KEGG

692674 K16799 transcriptional activator cubitus interruptus | (RefSeq) Ci; transcriptional activator cubitu

GO

GO:0003676 GO:0046872 GO:0008270 GO:0004190 GO:0006508 GO:0007166 GO:0016020 GO:0000287 GO:0006281 GO:0006259

Length:

1499

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0396100000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00184

outside

1 - 1499

Pi

303.409087

Theta

170.834599

Tajima's D

2.322702

CLR

0.217347

CSRT

0.927553622318884

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree