SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16017
Pre Gene Modal
BGIBMGA004600
Annotation
PREDICTED:_IQ_motif_and_SEC7_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr27(-):6101483-6128665      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.35
 

Sequence

CDS
ATGGAGAATCGTTGTCTTTGCTTACTTTCTCCGAACGATCGTGACTCCGGCAGTGGTTATGGTCTGGTTATGTGCTTTTCGCAGAAGGTAGACGAAGAGGAGCCAGGCGGCGGGGTTCCGCTGCATCCACCGGACGGCTTCTACACTCATCAGCACTCGATCCACGCGCATCATGCCCACACTGAGCCCGACCGAGGGTACATGGATGGCAACAGATACGTCACCGATGTCCATCGACCGTTACCAGCTCTAAATCATTCGAACTCGTCATGTTCGTCGGCGTCGAACGCGTCGACGGGCGCGGGTCTTTGCACGGCACAGGAGCCGGCGTCGCAGCTTTACATTGCCGCGCCGCCGGAGGGCTTCGGCCTCGCCGTTCATACCAACAGCCGCTATGAGATGTCGCAGGACCTGCTCGATAAGCAAGTGGAAATCTTAGAGAGACGATACGGAGGTCTCCGCGCCCGCAGGGCTGCCGTCACCATCCAGCGCGCGTTCCGAAGGCGGCAACTGCTCAAGAAGTTCAGCGCGATCACGGCTATGGCCAAAGCTGCCGACTCGAATGCGAGACGGCTACAAGACGGTCCCGATCACGGTCAATTAGTCAATGGTACTGATATCTACGCGACTACGTTGCTACAAAAAAGTCCCAGCGGCACAGAAAAGATGTTAGCTTTGACGAGACCCATGAGGTCGATGTCCTTGCGGGAGCGACACGAACCACCCGACATGGGCAACCACTTGCAATGCGACACGCACGACGTAGAAGCCATGGTTGCTAGAGTTCAGCAGTCGGCTCACCAGATCCACATGATCGCCACCGATCTACCGCCCGGGGTGCTTCATCCGGCTGACGCAGACAGCGGGGTTTGCAGTTGTTCAGTTAGCGGCTCCGTGACCAATATATCGACTTCATCATCGCACAATGAATCTCTACACAATCACCAGATGATGAATACTGGTCCGATCTATGGAAATCTACTCTCGTCGGGTGGCAAACCCCTGTCGTCTCCCACCCCCCGACAGCAGCAGCAACTGGCTGCGATACAAGCTGCGAACGCCAGGAGGATGCCTCCGGAAGTGCCCAAAAGAACGAGCAGCATAACTCTAAACGCCGAGAGTCCGGTGTCGCTTAGACGTGCGGAATGCGGAGCGGTCGTCAGGGGAGGATCGATGTCTTCCGTGCAGTCCTCGTCCTCATCATCATCGCAGGAGCATCGCCATCACTACCACCAGCCCTACCAGCCCAGGCAGCCGGAGACGCACGTGCACGTCCCAGAGTACCTCAACGCGCGTCCCGGCGTCGTGCTGGAAGGAGATCGGTACTCCGTCTGGAAGAGACAGGAGGCCGCTCCTTACTACGAAGCCCCCCCGCCCCCGATGGCAGCGCCCTGCTGTAGGCCACAGCATGAGCACCATCAGCATCAGCAACCGTTAAAGGTGTCAGAAACTGTCCGGAAACGCCAGTACCGCGTCGGCCTTAACTTGTTCAACAAGAAACCAGAGCGCGGCATCGCTTACCTGATCTCCCGCGGCTTCCTCGAGAACTCGCCGCGGGGCGTGGCAAGGTTCCTCATCACCAGAAAGGGCCTGAGCAAACAGATGATCGGAGAATACCTTGGAAACCTGCAGAATCCATTCAATATGGCAGTTCTGGAATGCTTCGTAAACGAGCTAGACTTGTCGGGTATGGCGGTAGACGTGGCTCTGCGCCGGTACCAGGCTCACTTCCGGTTGCCGGGCGAGGCGCAGAAGATCGAGCGTCTGGTCGAAGCGTTCGCCAGAAGATACTGCATCTGCAACACAGATTTCGTTCAAAGGTTGCGGACTCAGGACACGATATTCGTGTTGGCCTTCGCCATAATAATGCTGAACACGGATTTGCACACTCCGAACCTGAAGCCGGAAGCTCGCATGTCCTTGGAAGACTTCGTGAAGAACCTTCGCGGCATCGACGACTGCGGCGACATCGACAGGGACATGCTCGCTGGGATCTACGACAGAGTCAAGGCGAACGAGTTTAGACCCGGCAGCGACCACGTCACGCAGGTGATGAAAGTGCAAGCGACGATAGTCGGGAAGAAGCCCCACCTCGCTCTGCCGCACCGTCGCCTCGTCTGCTACTGCAGGTTGTACGAGATACCTGACATACACAAGAAGGAGCGACCCGGAGTCCATCAGAGAGAAGTATTCCTTTTCAACGATCTACTCGTGATCACGAAAATCTTCAGCAAGAAGAAATCGTCGGTGACGTACACCTTCCGACAGTCGTTTCCGCTGTGCGGCATGGTGGTCAGCCTGTTCTCCGTGCCTCATTACCCGTTCGGCATACGTTTGTCTCGTCGAGTCGACAACCGTCGCTTGTCTACGTTTAACGCTCGCAACGAGCACGACCGCTGCAAGTTCGCGGAGGACCTTCGCGAGAGTATCGCCGAGATGGACGAGATGGAGGCCATGAGGATCGAGGGCGAACTCAACAGGGGGAAGGGAAGGAACACCGGGAACAACGCCAGGAACGTGATGGAAAACCGAGACAGCGGCGTGGCTGATGTTGAAATCGATCACCAGCAGTGCGTCGACCACGTCCACATGCACGGCGTGGTGGTTCCTCCTCCGCCCTCGTGTCCAGCACCAGCAGCCCCCTCCAGGCTCTCCTCGAACCCACCGCCCACCAGCATCATCAAACGGAACGTGCTCAGCAACTCTCTAGTCGATATCAATGACCCGGCGGAGCGACTCCAGCGGCGCGGGTCGGTGGGGTCCCTGGACAGCGGCATGTCCGTCTCCTTCCAGCAGGGAAGCAGGAACGCATTACACGCCACTTCACCGAGACATCCCACGGAACAACGGTCGCCGGGTCGTTTGTTCGGCGGCATATTCCCGGGACGTATTCGTAAGCTCAGCGCCTCCGGGATCCCGGACGCGAAGCACGGGCAGGTCGGGAAGAGCACCGAAGTTTGA
Protein
MENRCLCLLSPNDRDSGSGYGLVMCFSQKVDEEEPGGGVPLHPPDGFYTHQHSIHAHHAHTEPDRGYMDGNRYVTDVHRPLPALNHSNSSCSSASNASTGAGLCTAQEPASQLYIAAPPEGFGLAVHTNSRYEMSQDLLDKQVEILERRYGGLRARRAAVTIQRAFRRRQLLKKFSAITAMAKAADSNARRLQDGPDHGQLVNGTDIYATTLLQKSPSGTEKMLALTRPMRSMSLRERHEPPDMGNHLQCDTHDVEAMVARVQQSAHQIHMIATDLPPGVLHPADADSGVCSCSVSGSVTNISTSSSHNESLHNHQMMNTGPIYGNLLSSGGKPLSSPTPRQQQQLAAIQAANARRMPPEVPKRTSSITLNAESPVSLRRAECGAVVRGGSMSSVQSSSSSSSQEHRHHYHQPYQPRQPETHVHVPEYLNARPGVVLEGDRYSVWKRQEAAPYYEAPPPPMAAPCCRPQHEHHQHQQPLKVSETVRKRQYRVGLNLFNKKPERGIAYLISRGFLENSPRGVARFLITRKGLSKQMIGEYLGNLQNPFNMAVLECFVNELDLSGMAVDVALRRYQAHFRLPGEAQKIERLVEAFARRYCICNTDFVQRLRTQDTIFVLAFAIIMLNTDLHTPNLKPEARMSLEDFVKNLRGIDDCGDIDRDMLAGIYDRVKANEFRPGSDHVTQVMKVQATIVGKKPHLALPHRRLVCYCRLYEIPDIHKKERPGVHQREVFLFNDLLVITKIFSKKKSSVTYTFRQSFPLCGMVVSLFSVPHYPFGIRLSRRVDNRRLSTFNARNEHDRCKFAEDLRESIAEMDEMEAMRIEGELNRGKGRNTGNNARNVMENRDSGVADVEIDHQQCVDHVHMHGVVVPPPPSCPAPAAPSRLSSNPPPTSIIKRNVLSNSLVDINDPAERLQRRGSVGSLDSGMSVSFQQGSRNALHATSPRHPTEQRSPGRLFGGIFPGRIRKLSASGIPDAKHGQVGKSTEV

Summary

Uniprot
A0A3S2P6C3   A0A194QB74   A0A212EU77   A0A2H1WML7  
Pubmed
26354079    22118469   
EMBL
RSAL01000012    RVE53487.1    KQ459460    KPJ00676.1    AGBW02012447    OWR45053.1    + More
ODYU01009642    SOQ54216.1   
Proteomes
UP000283053    UP000053268    UP000007151   
Pfam
PF16453   IQ_SEC7_PH        + More
PF01369   Sec7
Interpro
IPR000904   Sec7_dom        + More
IPR033742   IQSEC_PH       
IPR011993   PH-like_dom_sf       
IPR035999   Sec7_dom_sf       
IPR023394   Sec7_C_sf       
SUPFAM
SSF48425   SSF48425       
Gene 3D
1.10.1000.11     2.30.29.30    
CDD
cd13318  PH_IQSEC
 cd00171  Sec7
ProteinModelPortal
A0A3S2P6C3   A0A194QB74   A0A212EU77   A0A2H1WML7  
PDB
6FNE     E-value=5.50838e-121,     Score=1115

Ontologies

KEGG
101744693    K12495 IQ motif and SEC7 domain-containing protein | (RefSeq) IQ motif and SEC7 domain-containing pr
PATHWAY
04144    Endocytosis - Bombyx mori (domestic silkworm)
GO
GO:0005086   GO:0032012   GO:0043565   GO:0005874   GO:0007017   GO:0007166   GO:0016020   GO:0000287   GO:0006281   GO:0006259  

Topology

Length:
986
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.28935
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00011
outside
1  -  986
 
 

Population Genetic Test Statistics

Pi
278.017143
Theta
177.382733
Tajima's D
1.963262
CLR
0.140723
CSRT
0.876906154692265
Interpretation
Uncertain
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