Silkworm Genome Informatics Database

Gene

KWMTBOMO16016

Pre Gene Modal

BGIBMGA004601

Annotation

PREDICTED:_homeobox_protein_ceh-43-like_[Bombyx_mori]

Location

Bomo_Chr27(-):6086582-6089955 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.404

CDS

ATGGAAGAAACATTGGATGGGCGGGAAGTATCGGCCGGTGGTTTCGACTCGGCGGCCATCTTGAATGATGACGTTGCACCAACTACGAGCTTCTGCTATGGGATTCCGAATTTATTTAACGGGTTGGGTCCTGGTTCCGTTCTCTGTGAGCGTCCTGAGACTGAGCCTTCAGAAGCTTACCCTCAAAACACTGAACCTTCGGAGGACCAGGAACAACAGTTTGAAGACGACGAAGAATACTCACCTAAATCCAGCTCAGGGTCGAAGGGTGATGTACCCAAAAGAAAACAAAGAAGATACAGAACCACCTTCTCCAATATTCAGCTGGAGCAGTTGGAGTCAGCGTTTCAGAAGACCCACTACCCCGATGTGTTCTTTAGAGAAGAACTTGCTATGAGAATTGACTTAACGGAGGCCAGAGTTCAGGTATGGTTTCAAAATCGGCGGGCAAAATGGCGTAAGCAACAAAAGTCGGGTTGTGATCAATTCCCACCAAGAGGCCGGTCACCCTCAGACCGTTCTCCTTCTGCTCTGGCGCTGGAGATGAGGGATTTTATCACTATTCCAGTTTCGTCGTCGCAAATGGTGAATTTAACTGAAATACCAAATCAGAAACAAACAGGTCCAGCTATTCACATATCAGCACTTCCAACACGACAGAATCCTCAAGCTGAACTGCCGACTTTCTCGATTCCACTACAATACAATCTTGGTACATTCAAAAAAGTTGACGATGTTCAAATCGAAGAAACAAACGTCACGCAATGGGATAGCAGAATGATACCAACTTTCAACCTAATGAATCTCAAACCACTCATGGAAACAAGAGAAGATGTTAATATTCATGAAATGAAATACGAAGTGAAGGACGAAACAAATAGAGTTAATTTTAATGAAATGAACACTCAAGATATTGAAACTGATTTACTTAAAGAGACAGCTAATGAAGGACAAAATATATCACCGGATTTCGAAATAAGGTACCAATATGAGAATGAACACAATAAAAGGTTTAGGGGCGGCTTCGATAATTCCATGATAGAAGATGGCAGGAATGATTATATGTGCGACAGTGAGTTTCTATGTAAAAATAACTTCGATAAAGACAAATCTAGTGACTTTGATGAATGTCATCTTTTGGATGCGGATAATAATGTTGGTATGAGTAATTTTGGAAGTAATTTATAA

Protein

MEETLDGREVSAGGFDSAAILNDDVAPTTSFCYGIPNLFNGLGPGSVLCERPETEPSEAYPQNTEPSEDQEQQFEDDEEYSPKSSSGSKGDVPKRKQRRYRTTFSNIQLEQLESAFQKTHYPDVFFREELAMRIDLTEARVQVWFQNRRAKWRKQQKSGCDQFPPRGRSPSDRSPSALALEMRDFITIPVSSSQMVNLTEIPNQKQTGPAIHISALPTRQNPQAELPTFSIPLQYNLGTFKKVDDVQIEETNVTQWDSRMIPTFNLMNLKPLMETREDVNIHEMKYEVKDETNRVNFNEMNTQDIETDLLKETANEGQNISPDFEIRYQYENEHNKRFRGGFDNSMIEDGRNDYMCDSEFLCKNNFDKDKSSDFDECHLLDADNNVGMSNFGSNL

Uniprot

H9J511 A0A2A4JWW2 A0A2H1V0B3 A0A212ES38 A0A194Q6P3 A0A194RLC7 + More
A0A212EUC3

Pubmed

19121390 22118469 26354079

EMBL

BABH01025821 NWSH01000522 PCG75882.1 ODYU01000069 SOQ34206.1 AGBW02012874 + More
OWR44297.1 KQ459460 KPJ00675.1 KQ460207 KPJ16786.1 AGBW02012447 OWR45051.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000053240

PRIDE

H9J511

Pfam

PF00046 Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9J511 A0A2A4JWW2 A0A2H1V0B3 A0A212ES38 A0A194Q6P3 A0A194RLC7 + More
A0A212EUC3

PDB

3A01 E-value=1.54767e-25, Score=288

KEGG

101744829 K09452 homeobox protein aristaless-related | (RefSeq) homeobox protein ceh-43-like

GO

GO:0006355 GO:0043565 GO:0005634 GO:0003677 GO:0005874 GO:0007017 GO:0007166 GO:0016020 GO:0000287 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

395

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00134

Exp number, first 60 AAs:

0.00134

Total prob of N-in:

0.00600

outside

1 - 395

Pi

198.26459

Theta

205.173367

Tajima's D

0.157897

CLR

1.132994

CSRT

0.414879256037198

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics