Gene

KWMTBOMO16008

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr27(+):5853037-5853428      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.953

CDS

ATGTCCCGGAAAATGTTGCCTTCTATCAAAAAGCGCAAGATAGAATATCTCGGCCACGTGCTCAGGAACGATAGATACACGCTGTTGCAGTTGATAATGATGGGCAAAGTGGACGGAAAAAGACGTGCTGGGCGAAGAAAGAAGTCATGGCTCTGGAATATCCGGGAGGGGGCCGGTATTGACTCCGTCGAACAGCTGTTCCGGCTGGCTGCTGATACAGATGAATACAGGAAGCTAACGGCCAACCTTCAGGATTGA

Protein

MSRKMLPSIKKRKIEYLGHVLRNDRYTLLQLIMMGKVDGKRRAGRRKKSWLWNIREGAGIDSVEQLFRLAADTDEYRKLTANLQD

Uniprot

D5LB38   A0A2A4J795   A0A0N0PCF3   A0A151IIH7   A0A194PZW3   A0A0A9VZT6   + More
A0A146L0Z1   S4NVE8   A0A194PL64   A0A0K8T3U8   A0A0A9XCF5   A0A0J7KRQ5   A0A2H1V1U0   A0A194RRJ3   A0A2S2QJK3   A0A2S2QAF2   A0A2S2PW26   A0A0J7KZE8   A0A0A9XXL9   A0A2A4JBK9   A0A0N0PFP4   A0A0N1IQU0   A0A2S2NMQ2   J9LIJ7   A0A3S1AY56   A0A2S2P9Y7   A0A0J7KK86   W4Y921   A0A2S2P7C6   A0A3S1AYP8   A0A3S1HJZ0   A0A3S0ZU31   A0A3S1I3C2   H3B2Y3   A0A2S2PJ33   A0A0B7BUS3   X1D4L4   A0A2W1BSK1   A0A0B7BSZ9   A0A0B7BT80   A0A0B7BUR9   A0A3S1AZH6   A0A3S3P648   A0A3S2L0R7   A0A3S0ZE77   W4ZJA4   A0A2A4JXP9   A0A2G8L4W3   A0A0B7BVF8   A0A2V9X8L4   A0A3S1A2L0   A0A0B7BT11   A0A2W1BHL0   S4NYG9   X1WK45   A0A3S1A6N0   W4XFH1   A0A194PHS9   J9M5S4   A0A067QXS5   A0A2W1B3R1   J9LZK0   H2YWZ5   A0A2G8K327   A0A2H1W7G4   A0A146LQM2   H2YWZ6   A0A0B7BTW4   A0A3S0ZE04   A0A067QWA3   A0A2P8XS55   A0A0B7BVF2   A0A2P8XQ59   A0A2W1BSS7  

Pubmed

20470440    26354079    25401762    26823975    23622113    9215903    + More
24624126    28756777    29023486    24845553    29403074   

EMBL

GU815089    ADF18552.1    NWSH01002736    PCG67606.1    KQ460652    KPJ12975.1    + More
KQ977522    KYN02133.1    KQ459585    KPI98284.1    GBHO01041897    JAG01707.1    GDHC01017214    JAQ01415.1    GAIX01012977    JAA79583.1    KQ459602    KPI93474.1    GBRD01005612    JAG60209.1    GBHO01028834    JAG14770.1    LBMM01003995    KMQ92919.1    ODYU01000306    SOQ34818.1    KQ459765    KPJ20087.1    GGMS01008711    MBY77914.1    GGMS01004979    MBY74182.1    GGMS01000367    MBY69570.1    LBMM01001656    KMQ95932.1    GBHO01020011    GDHC01013600    JAG23593.1    JAQ05029.1    NWSH01001998    PCG69477.1    LADJ01023802    KPJ21112.1    LADJ01040095    KPJ21345.1    GGMR01005851    MBY18470.1    ABLF02012409    ABLF02012412    RQTK01001448    RUS70261.1    GGMR01013640    MBY26259.1    LBMM01006413    KMQ90631.1    AAGJ04161766    GGMR01012724    MBY25343.1    RQTK01001364    RUS70632.1    RQTK01000360    RUS81011.1    RQTK01000752    RUS75316.1    RQTK01000011    RUS91450.1    AFYH01119920    GGMR01016842    MBY29461.1    HACG01049256    CEK96121.1    BART01031562    GAH15691.1    KZ149912    PZC78062.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    RQTK01000685    RUS76136.1    NCKU01004395    RWS06003.1    RSAL01000289    RVE42931.1    RQTK01000625    RUS76894.1    AAGJ04021158    NWSH01000469    PCG76200.1    MRZV01000221    PIK55282.1    HACG01049496    CEK96361.1    QIAP01000240    PYX61602.1    RQTK01000357    RUS81065.1    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    KZ150087    PZC73751.1    GAIX01008594    JAA83966.1    ABLF02024992    ABLF02024994    ABLF02025002    ABLF02043975    RQTK01000220    RUS84039.1    AAGJ04075245    KQ459603    KPI92872.1    ABLF02015324    KK853131    KDR10935.1    KZ150366    PZC71172.1    ABLF02042206    MRZV01000940    PIK42365.1    ODYU01006805    SOQ48998.1    GDHC01009154    JAQ09475.1    HACG01049492    CEK96357.1    RQTK01001013    RUS72821.1    KK852870    KDR14607.1    PYGN01001438    PSN34841.1    HACG01049490    HACG01049491    CEK96355.1    CEK96356.1    PYGN01001548    PSN34137.1    KZ149985    PZC75696.1   

Proteomes

UP000218220    UP000053240    UP000078542    UP000053268    UP000036403    UP000007819    + More
UP000271974    UP000007110    UP000008672    UP000285301    UP000283053    UP000230750    UP000247801    UP000027135    UP000007875    UP000245037   

PRIDE

D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03188   Cytochrom_B561
PF03221   HTH_Tnp_Tc5
PF04218   CENP-B_N
PF05699   Dimer_Tnp_hAT

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006593   Cyt_b561/ferric_Rdtase_TM       
IPR036734   Neur_chan_lig-bd_sf       
IPR027124   Swc5/CFDP2       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR008906   HATC_C_dom       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219        + More
SSF63712   SSF63712       
SSF46689   SSF46689       

Gene 3D

3.60.10.10     2.70.170.10    

ProteinModelPortal

D5LB38   A0A2A4J795   A0A0N0PCF3   A0A151IIH7   A0A194PZW3   A0A0A9VZT6   + More
A0A146L0Z1   S4NVE8   A0A194PL64   A0A0K8T3U8   A0A0A9XCF5   A0A0J7KRQ5   A0A2H1V1U0   A0A194RRJ3   A0A2S2QJK3   A0A2S2QAF2   A0A2S2PW26   A0A0J7KZE8   A0A0A9XXL9   A0A2A4JBK9   A0A0N0PFP4   A0A0N1IQU0   A0A2S2NMQ2   J9LIJ7   A0A3S1AY56   A0A2S2P9Y7   A0A0J7KK86   W4Y921   A0A2S2P7C6   A0A3S1AYP8   A0A3S1HJZ0   A0A3S0ZU31   A0A3S1I3C2   H3B2Y3   A0A2S2PJ33   A0A0B7BUS3   X1D4L4   A0A2W1BSK1   A0A0B7BSZ9   A0A0B7BT80   A0A0B7BUR9   A0A3S1AZH6   A0A3S3P648   A0A3S2L0R7   A0A3S0ZE77   W4ZJA4   A0A2A4JXP9   A0A2G8L4W3   A0A0B7BVF8   A0A2V9X8L4   A0A3S1A2L0   A0A0B7BT11   A0A2W1BHL0   S4NYG9   X1WK45   A0A3S1A6N0   W4XFH1   A0A194PHS9   J9M5S4   A0A067QXS5   A0A2W1B3R1   J9LZK0   H2YWZ5   A0A2G8K327   A0A2H1W7G4   A0A146LQM2   H2YWZ6   A0A0B7BTW4   A0A3S0ZE04   A0A067QWA3   A0A2P8XS55   A0A0B7BVF2   A0A2P8XQ59   A0A2W1BSS7  

KEGG

101739063    no KO assigned | (RefSeq) uncharacterized LOC101739063

GO

GO:0003964   GO:0004519   GO:0055114   GO:0016021   GO:0003677   GO:0046983   GO:0006355  

PANTHER

PTHR23227  

Length:

85

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00471

Exp number, first 60 AAs:

0.00317

Total prob of N-in:

0.34766

outside

1  -  85

 

 

Pi

175.86097

Theta

184.81979

Tajima's D

-0.152528

CLR

0

CSRT

0.332783360831958

Interpretation

Uncertain