Gene

KWMTBOMO16004  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004541

Annotation

heat_shock_protein_20.4_[Bombyx_mori]

Location

Bomo_Chr27(+):5801847-5802611      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.106 Mitochondrial   Reliability : 1.507

CDS

ATGTCGTTGCTACCATATTTCTTCGATGATTTTGGCTCTAGACGCCCTCGCCGTCTGTTGGACCAGCATTTTGGCCTTGCCTTAACACCAGATGATCTTCTTAGTGTCGCTGCCGGGCCTTTGCTGAACAGGGAATACTACAGACCGTGGCGCCATCTCGCTGCAGCGGCTAGAGATGTTGGTTCCAGCATCAAAGTCGACAAGGATAAGTTCCAAGTGAATTTAGATGTGCAGCACTTCGCGCCAGAAGAGATCTCTGTGAAGACTGCCGACGGGTACATCGTAGTGGAAGGCAAGCACGAAGAGAAGAAAGACGAGCACGGGTATATTTCAAGGCAGTTCGTCCGACGTTACGCGCTGCCTGAAGGCGCGGCGCCTGAGACTGTGGAATCGCGACTGTCATCAGACGGGGTACTCACCATCACTGCGCCGAGGAAGGTGCCTGACGCCGTCAAGGGAGAGAGAAAGGTGCCCATCGCACAGACCGGTCCCGTTCGCAAGGAGATCAAGGATCAGAGTGAAGAAGCCAACGAGAAGGAAAAGTAG

Protein

MSLLPYFFDDFGSRRPRRLLDQHFGLALTPDDLLSVAAGPLLNREYYRPWRHLAAAARDVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDEHGYISRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRKVPDAVKGERKVPIAQTGPVRKEIKDQSEEANEKEK

Similarity

Belongs to the small heat shock protein (HSP20) family.

Uniprot

Q9GSB6   B9VTS8   A0A2H1W1Y8   E2F399   A0A2W1BHM1   A0A2A4J9F7   + More
A0A0N1INR0   A0A0A7RE39   M1FKQ7   A0A0K0XQX1   A0A212EIS5   Q2LCS7   Q5MGN8   Q5MGL1   Q1HAT5   A0A161GJ22   Q5R1P7   E2F3A1   A0A2H1X0S0   A0A0C5PKY8   Q9GN07   A0A0P0CJ81   A0A0N0PBJ9   A0A3S2PJT0   Q0KKB1   S4P4G2   I4DMV4   A0A343EU23   A0A0A7BZM3   A0A0L7K2K7   A0A194QB65   A0A2H4LHL7   A0A2H4LI82   A0A2A4J3F8   A0A0A7BZF0   A0A2D1CRQ9   A0A2A4J9J4   A0A222NUK8   E2F397   A0A0L7L9D3   A0A212FJB9   A0A0A7BZ27   R4HL93   A0A0A7RCH5   O18634   A0A0A7RCE5   A0A220W0C8   A0A194Q6N8   A0A0N1PFQ5   A0A3S2L9M7   B2ZHW3   A0A2H1W2W7   F1C928   A0A194Q5N9   A0A385PHG6   A0A212F0A4   A0A0K0XQY0   A0A222NUL2   Q1AMF5   A0A212ERQ7   A0A212FIM4   D9J2L8   Q1AMF7   A0A1E1W5U5   A0A0A7BZ70   R9S0D1   A0A222NUL9   A0A212EIS8   Q5R1P6   B9VTS0   S4NMP5   R9RZX9   A0A2H1W170   A0A2A4JK93   A0A075BR54   A0A2A4JUN7   A0A2W1BH28   A0A2H1WH29   A0A222NUM2   F1C929   A0A2A4K9P8   A0A2D1CRP7   A0A2H1WKW0   E2F398   Q1AMF6   A0A2A4JLW2   A0A0K0XR46   A0A345W859   H9J540   A0A0N0PBK3   A0A194PVM7   A0A0L7L8L1   Q5R1P4   H9J4S5   A0A212FBC6   Q0KKB2   F1C930   A0A222NUK4   A0A212F079   A0A2W1BPZ5  

Pubmed

17031055    19121390    21510953    28756777    26354079    25514417    + More
23763950    26196395    22118469    18804477    16023793    25527122    17630658    23622113    22651552    24947609    26227816    28755305    9654738    28687981   

EMBL

BABH01025846    AF315318    AAG30945.2    FJ602788    ACM24354.1    ODYU01005718    + More
SOQ46842.1    HM046615    ADK55522.1    KZ150055    PZC74338.1    NWSH01002265    PCG68757.1    KQ460891    KPJ10837.1    KM217077    KM217078    AJA32865.1    JQ708200    AFQ02692.1    KP843896    AKS40075.1    AGBW02014566    OWR41396.1    DQ336356    ABC68342.2    AY829748    AAV91362.1    AY829747    AY829775    AAV91361.1    AAV91389.1    JX491641    KC710020    AB244517    AGC23337.1    AGM90553.1    BAE94664.1    KU096844    AMY63177.1    AB195970    BAD74195.1    HM046617    ADK55524.1    ODYU01012514    SOQ58867.1    KM881570    AJQ22645.1    AF315317    AF315319    FJ602772    AAG30944.1    AAG30946.1    ACM24338.1    KR137569    ALI87024.1    KPJ10841.1    RSAL01000012    RVE53492.1    AB251898    BAF03558.1    GAIX01009047    JAA83513.1    AK402622    BAM19244.1    MF067296    ASM61894.1    KJ461917    AHW45919.1    JTDY01014370    KOB52036.1    KQ459460    KPJ00666.1    KX845562    ATB54993.1    PZC74337.1    KX845559    ATB54990.1    PZC74333.1    NWSH01003339    PCG66520.1    PCG66521.1    KJ461916    AHW45918.1    KX977584    ATN45243.1    PCG68755.1    KX958476    ASQ43192.1    HM046613    ADK55520.1    JTDY01002160    KOB71979.1    AGBW02008280    OWR53838.1    KJ461920    AHW45922.1    HQ647012    AET10424.1    KM217079    AJA32867.1    U94328    AAC36146.1    KM217080    AJA32868.1    KY701309    ASK86231.1    KPJ00670.1    KPJ10838.1    RSAL01000078    RVE48718.1    EU668902    ACD01216.1    SOQ46844.1    HQ219475    ADX96000.1    KPJ00669.1    MG816464    AYA93248.1    AGBW02011158    OWR47131.1    KP843906    AKS40085.1    KX958479    ASQ43195.1    DQ063591    AAZ14792.1    AGBW02012988    OWR44131.1    AGBW02008361    OWR53574.1    HM359007    ADI48314.1    DQ063589    AAZ14790.1    GDQN01008714    JAT82340.1    KJ461913    AHW45915.1    KC710018    KC710022    AGM90551.1    AGM90555.1    KX958482    ASQ43198.1    OWR41397.1    AB195971    BAD74196.1    FJ602780    ACM24346.1    GAIX01014246    JAA78314.1    KC710019    KC710024    AGM90552.1    AGM90557.1    RVE53491.1    SOQ46845.1    NWSH01001148    PCG72391.1    KC689795    KX845561    KZ150027    AGQ42773.1    ATB54992.1    PZC74791.1    NWSH01000548    PCG75721.1    KZ150133    PZC73025.1    ODYU01008627    SOQ52368.1    KX958478    ASQ43194.1    HQ219476    ADX96001.1    NWSH01000008    PCG80951.1    KX977585    ATN45244.1    ODYU01009326    SOQ53668.1    HM046614    ADK55521.1    DQ063590    AAZ14791.1    PCG72390.1    KP843898    AKS40077.1    MH042022    AXJ21597.1    BABH01042227    KQ460970    KPJ10176.1    KQ459597    KPI95180.1    JTDY01002346    KOB71621.1    AB195973    BAD74198.1    BABH01035507    AGBW02009356    OWR51030.1    AB251897    BAF03557.1    HQ219477    ADX96002.1    KX958471    ASQ43187.1    OWR47132.1    PZC74790.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000283053    UP000037510    + More
UP000053268   

PRIDE

Q9GSB6    B9VTS8    Q5R1P7    Q9GN07    Q5R1P6    B9VTS0    + More
H9J540    Q5R1P4    H9J4S5   

Pfam

PF00011   HSP20

Interpro

IPR008978   HSP20-like_chaperone        + More
IPR002068   A-crystallin/Hsp20_dom       
IPR001436   Alpha-crystallin/HSP       
IPR036116   FN3_sf       
IPR003961   FN3_dom       

SUPFAM

SSF49764   SSF49764        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.790    

CDD

cd00063  FN3

ProteinModelPortal

Q9GSB6   B9VTS8   A0A2H1W1Y8   E2F399   A0A2W1BHM1   A0A2A4J9F7   + More
A0A0N1INR0   A0A0A7RE39   M1FKQ7   A0A0K0XQX1   A0A212EIS5   Q2LCS7   Q5MGN8   Q5MGL1   Q1HAT5   A0A161GJ22   Q5R1P7   E2F3A1   A0A2H1X0S0   A0A0C5PKY8   Q9GN07   A0A0P0CJ81   A0A0N0PBJ9   A0A3S2PJT0   Q0KKB1   S4P4G2   I4DMV4   A0A343EU23   A0A0A7BZM3   A0A0L7K2K7   A0A194QB65   A0A2H4LHL7   A0A2H4LI82   A0A2A4J3F8   A0A0A7BZF0   A0A2D1CRQ9   A0A2A4J9J4   A0A222NUK8   E2F397   A0A0L7L9D3   A0A212FJB9   A0A0A7BZ27   R4HL93   A0A0A7RCH5   O18634   A0A0A7RCE5   A0A220W0C8   A0A194Q6N8   A0A0N1PFQ5   A0A3S2L9M7   B2ZHW3   A0A2H1W2W7   F1C928   A0A194Q5N9   A0A385PHG6   A0A212F0A4   A0A0K0XQY0   A0A222NUL2   Q1AMF5   A0A212ERQ7   A0A212FIM4   D9J2L8   Q1AMF7   A0A1E1W5U5   A0A0A7BZ70   R9S0D1   A0A222NUL9   A0A212EIS8   Q5R1P6   B9VTS0   S4NMP5   R9RZX9   A0A2H1W170   A0A2A4JK93   A0A075BR54   A0A2A4JUN7   A0A2W1BH28   A0A2H1WH29   A0A222NUM2   F1C929   A0A2A4K9P8   A0A2D1CRP7   A0A2H1WKW0   E2F398   Q1AMF6   A0A2A4JLW2   A0A0K0XR46   A0A345W859   H9J540   A0A0N0PBK3   A0A194PVM7   A0A0L7L8L1   Q5R1P4   H9J4S5   A0A212FBC6   Q0KKB2   F1C930   A0A222NUK4   A0A212F079   A0A2W1BPZ5  

PDB

3J07     E-value=8.01095e-19,     Score=226

KEGG

692591    K09542 crystallin, alpha B | (RefSeq) Hsp20.4, Hsp22.6, hsp; heat shock protein 20.4

GO

GO:0046872   GO:0005840   GO:0016021  

Length:

181

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0273

Exp number, first 60 AAs:

0.0273

Total prob of N-in:

0.01148

outside

1  -  181

 

 

Pi

142.476914

Theta

195.135143

Tajima's D

-0.825782

CLR

0.07942

CSRT

0.173491325433728

Interpretation

Uncertain