Gene

KWMTBOMO15999

Pre Gene Modal

BGIBMGA004539

Annotation

PREDICTED:_transmembrane_and_coiled-coil_domains_protein_2_isoform_X4_[Bombyx_mori]

Location

Bomo_Chr27(+):5712437-5718666      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.137 Extracellular   Reliability : 1.059 Nuclear   Reliability : 1.143

CDS

ATGACCGACTCTGCGTTCACACTCAAACCGATCCTGAACGAACTACGCGAGCGGAGGGAGGATTATGAGCGGTTAGCCGAAAAACTAGAGGCGCTGAAGAGCCTGTCCCAAGAAGTATCGTTCCTGTCTTCCGCGTTGCAAGAGGAACGATTCAAAACCGAACGCTTGGAGGAGCAAATCAATGATCTCACTGAACTACACCAGAATGAGGTGGAGAACTTGAAACAAGCCCTCACAGACGTGGAGGAGAAAGTACAGTACCAGAGCGAAGAACGAATACGAGATATACACGAGGCGCTGGACCTCTGTCAGACTAAGATCAGCAAGCTGGAGCAGTGGGCGGCGAGCGGGGGCGGCGGCACGGGCGGCGGCGGGGCGGGCGGCGAGGCGGGGGGCGCGGGCAGCCTGCCGCCGCGCGTCGTGCTCGTCAAGCTGCTCAACGTCGCGCTCACCCTGCTTCAGCTCGCCTTGCTGCTCGTCGCCACCGTAGCAGGAGTCGCCATGCCCTTCTTGCGGACCAGAGTACGAGTGCTAACGACGTGTCTTGCGGTACTAGTCGGTATAGTAGTGCTGAAGCAATGGCCCGAAGTGTCTCAAGTGTCTGAACATTTGGCGAAAAGACTCAAACATTACTTGTTGGACGCTCCCGCGGACAGGTATGAATGCAAGTCGTTGTGTGGTTGA

Protein

MTDSAFTLKPILNELRERREDYERLAEKLEALKSLSQEVSFLSSALQEERFKTERLEEQINDLTELHQNEVENLKQALTDVEEKVQYQSEERIRDIHEALDLCQTKISKLEQWAASGGGGTGGGGAGGEAGGAGSLPPRVVLVKLLNVALTLLQLALLLVATVAGVAMPFLRTRVRVLTTCLAVLVGIVVLKQWPEVSQVSEHLAKRLKHYLLDAPADRYECKSLCG

Uniprot

H9J4U9   A0A3S2NKU9   A0A2W1BJ51   A0A0N1IEL2   A0A194Q5N4   A0A212FIQ0   + More
A0A1Y1LKN5   A0A2A3EQG5   V9I704   A0A195CQD6   E9IMB8   V9I936   E2BM81   A0A088AFY8   V9I8Q9   A0A0N0BKI2   A0A2J7QQ93   A0A0L7R8Z0   E0VDV9   A0A154PFC5   A0A195ELR6   A0A151X630   A0A3L8E259   A0A158NCL6   F4WFF2   A0A195F999   A0A1B0DK35   A0A2J7QQ79   A0A2J7QQ80   A0A0J7KZX6   A0A195BYJ0   A0A1B6JF75   A0A1B6F0P9   A0A1B6I534   A0A1B6IXJ8   A0A1B6FYG9   A0A1B6JNY2   A0A0P5LS05   A0A0P6GE41   A0A0P5SVJ1   A0A0P5CF81   A0A0P6BWD7   E9HSB3   N6U141   A0A0P5W5C1   A0A1B6EAF5   A0A2S2Q559   A0A1B6FUS2   U5ERZ5   A0A1B6ESN1   J9JJI7   A0A2S2NV75   A0A2H8TLD9   A0A1L8D918   A0A1B6D6K6   A0A1B6CBA1   A0A1L8D970   A0A1L8D980   A0A146LLH9   A0A1J1HYW5   A0A0A9XTV5   A0A0K8S7C6   A0A0A9YYG1   A0A0K8S7A2   T1HIP0   Q960J3   A0A0V0G9Q4   A0A1B6E3K9   A0A0P4VMX9   A0A069DVG7   Q296S3   I5AP95   A0A0K8TM51   A0A0M4EJE0   A0A3Q0J2E8   B4JHA5   A0A1W4URR8   A0A3Q0J2K6   A0A3B0JT92   B7Z0W3   A0A0R1E439   A0A3B0JV14   B3P2L3   A0A0R1EA72   A0A1W4V401   B4I4G0   B4QYB6   Q9VI21   A0A1W4V533   B3M0V1  

Pubmed

19121390    28756777    26354079    22118469    28004739    21282665    + More
20798317    20566863    30249741    21347285    21719571    21292972    23537049    26823975    25401762    27129103    26334808    15632085    17994087    26369729    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    26109357    26109356   

EMBL

BABH01025851    RSAL01000012    RVE53493.1    KZ150055    PZC74331.1    KQ460891    + More
KPJ10843.1    KQ459460    KPJ00664.1    AGBW02008345    OWR53610.1    GEZM01054790    JAV73398.1    KZ288197    PBC33734.1    JR036020    AEY56863.1    KQ977408    KYN02958.1    GL764129    EFZ18548.1    JR036016    AEY56859.1    GL449158    EFN83207.1    JR036018    AEY56861.1    KQ435699    KOX80611.1    NEVH01012087    PNF30746.1    KQ414629    KOC67314.1    DS235088    EEB11565.1    KQ434878    KZC09930.1    KQ978691    KYN29220.1    KQ982490    KYQ55804.1    QOIP01000002    RLU26108.1    ADTU01011961    GL888115    EGI67203.1    KQ981727    KYN36956.1    AJVK01066148    PNF30744.1    PNF30745.1    LBMM01001568    KMQ96072.1    KQ976396    KYM93003.1    GECU01010163    JAS97543.1    GECZ01026326    JAS43443.1    GECU01025660    JAS82046.1    GECU01016136    JAS91570.1    GECZ01014534    JAS55235.1    GECU01006735    JAT00972.1    GDIQ01190453    JAK61272.1    GDIQ01034459    JAN60278.1    GDIP01134680    GDIP01088702    JAL69034.1    GDIP01171180    JAJ52222.1    GDIP01016483    JAM87232.1    GL732748    EFX65357.1    APGK01053702    APGK01053703    KB741231    ENN72267.1    GDIP01091286    JAM12429.1    GEDC01002408    JAS34890.1    GGMS01003109    MBY72312.1    GECZ01015841    JAS53928.1    GANO01003483    JAB56388.1    GECZ01028754    GECZ01014050    GECZ01008230    JAS41015.1    JAS55719.1    JAS61539.1    ABLF02026104    GGMR01008007    MBY20626.1    GFXV01003044    MBW14849.1    GFDF01011115    JAV02969.1    GEDC01016103    GEDC01014239    GEDC01008240    GEDC01007753    JAS21195.1    JAS23059.1    JAS29058.1    JAS29545.1    GEDC01026546    GEDC01025454    GEDC01020863    GEDC01020694    GEDC01019426    GEDC01013078    GEDC01009574    GEDC01002358    GEDC01001917    JAS10752.1    JAS11844.1    JAS16435.1    JAS16604.1    JAS17872.1    JAS24220.1    JAS27724.1    JAS34940.1    JAS35381.1    GFDF01011082    JAV03002.1    GFDF01011073    JAV03011.1    GDHC01009778    JAQ08851.1    CVRI01000030    CRK92516.1    GBHO01037014    GBHO01021321    GBHO01006331    GDHC01002774    JAG06590.1    JAG22283.1    JAG37273.1    JAQ15855.1    GBRD01016645    JAG49182.1    GBHO01021035    GBHO01006335    GBHO01006332    GDHC01007875    JAG22569.1    JAG37269.1    JAG37272.1    JAQ10754.1    GBRD01016646    JAG49181.1    ACPB03009651    AY052028    AAK93452.1    GECL01001345    JAP04779.1    GEDC01023233    GEDC01022523    GEDC01004797    JAS14065.1    JAS14775.1    JAS32501.1    GDKW01002902    JAI53693.1    GBGD01001019    JAC87870.1    CM000070    EAL28384.3    EIM52780.1    GDAI01002161    JAI15442.1    CP012526    ALC47008.1    CH916369    EDV93812.1    OUUW01000008    SPP84243.1    AE014297    ACL83475.1    CM000160    KRK04006.1    SPP84242.1    CH954181    EDV48035.1    KRK04005.1    KRK04007.1    KRK04008.1    CH480821    EDW55103.1    CM000364    EDX11873.1    BT011351    BT011461    AAF54123.3    AAN13377.2    AAR96143.1    AAR99119.1    ACL83474.1    CH902617    EDV43180.2   

Proteomes

UP000005204    UP000283053    UP000053240    UP000053268    UP000007151    UP000242457    + More
UP000078542    UP000008237    UP000005203    UP000053105    UP000235965    UP000053825    UP000009046    UP000076502    UP000078492    UP000075809    UP000279307    UP000005205    UP000007755    UP000078541    UP000092462    UP000036403    UP000078540    UP000000305    UP000019118    UP000007819    UP000183832    UP000015103    UP000001819    UP000092553    UP000079169    UP000001070    UP000192221    UP000268350    UP000000803    UP000002282    UP000008711    UP000001292    UP000000304    UP000007801   

PRIDE

H9J4U9    Q960J3    Q9VI21   

Pfam

PF10267   Tmemb_cc2

Interpro

IPR019394   TEX28/TMCC       

ProteinModelPortal

H9J4U9   A0A3S2NKU9   A0A2W1BJ51   A0A0N1IEL2   A0A194Q5N4   A0A212FIQ0   + More
A0A1Y1LKN5   A0A2A3EQG5   V9I704   A0A195CQD6   E9IMB8   V9I936   E2BM81   A0A088AFY8   V9I8Q9   A0A0N0BKI2   A0A2J7QQ93   A0A0L7R8Z0   E0VDV9   A0A154PFC5   A0A195ELR6   A0A151X630   A0A3L8E259   A0A158NCL6   F4WFF2   A0A195F999   A0A1B0DK35   A0A2J7QQ79   A0A2J7QQ80   A0A0J7KZX6   A0A195BYJ0   A0A1B6JF75   A0A1B6F0P9   A0A1B6I534   A0A1B6IXJ8   A0A1B6FYG9   A0A1B6JNY2   A0A0P5LS05   A0A0P6GE41   A0A0P5SVJ1   A0A0P5CF81   A0A0P6BWD7   E9HSB3   N6U141   A0A0P5W5C1   A0A1B6EAF5   A0A2S2Q559   A0A1B6FUS2   U5ERZ5   A0A1B6ESN1   J9JJI7   A0A2S2NV75   A0A2H8TLD9   A0A1L8D918   A0A1B6D6K6   A0A1B6CBA1   A0A1L8D970   A0A1L8D980   A0A146LLH9   A0A1J1HYW5   A0A0A9XTV5   A0A0K8S7C6   A0A0A9YYG1   A0A0K8S7A2   T1HIP0   Q960J3   A0A0V0G9Q4   A0A1B6E3K9   A0A0P4VMX9   A0A069DVG7   Q296S3   I5AP95   A0A0K8TM51   A0A0M4EJE0   A0A3Q0J2E8   B4JHA5   A0A1W4URR8   A0A3Q0J2K6   A0A3B0JT92   B7Z0W3   A0A0R1E439   A0A3B0JV14   B3P2L3   A0A0R1EA72   A0A1W4V401   B4I4G0   B4QYB6   Q9VI21   A0A1W4V533   B3M0V1  

KEGG

101736790    no KO assigned | (RefSeq) transmembrane and coiled-coil domains protein 2

GO

GO:0016021   GO:0007420   GO:0012505  

PANTHER

PTHR17613  

Length:

227

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

30.42624

Exp number, first 60 AAs:

0

Total prob of N-in:

0.20865

outside

1  -  148

TMhelix

149  -  171

inside

172  -  227

 

 

Pi

238.251204

Theta

177.788842

Tajima's D

0.9978

CLR

0.395741

CSRT

0.658017099145043

Interpretation

Uncertain