Gene

KWMTBOMO15993  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005739

Annotation

DNA-directed_RNA_polymerases_I?_II?_and_III_subunit_RPABC5_[Melipona_quadrifasciata]

Location

Bomo_Chr27(+):5415113-5416641      View in EpiBrowser

Full name

DNA-directed RNA polymerases I, II, and III subunit RPABC5      

Alternative Name

RPB10 homolog

Location in the cell

Nuclear   Reliability : 2.777

CDS

ATGATTATTCCAGTACGATGTTTCACATGCGGGAAGGTTATAGGAAACAAATGGGAAGCTTACTTAGGCCTGCTACAGGCGGATTACACAGAAGGTGATGCTTTGGATGTCCTTGGATTGAAAAGATACTGCTGCAGAAGAATGTTGCTCGGACACGTGGATCTCATTGAAAAACTCTTGAATTATTCCCCATTAGAAAAATAA

Protein

MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLLNYSPLEK

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and a small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RBP10 is part of the core element with the central large cleft (By similarity).

Subunit

Component of the RNA polymerase I (Pol I), RNA polymerase II (Pol II) and RNA polymerase III (Pol III) complexes consisting of at least 13, 12 and 17 subunits, respectively.

Similarity

Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family.

Keywords

Complete proteome   DNA-directed RNA polymerase   Metal-binding   Nucleus   Reference proteome   Transcription   Zinc  

Feature

chain  DNA-directed RNA polymerases I, II, and III subunit RPABC5

Uniprot

H9J897   A0A1D2M0I2   A0A0M9A6T5   A0A195CCV1   A0A2W1B5A0   A0A2R5LEX0   + More
A0A0L7R8F3   A0A154P951   A0A2A4JIP6   A0A3S2P014   A0A1W4XSF6   A0A3F2YW19   Q2XUC6   F4WJC8   T1DHD9   A0A1Q3G365   A0A0C9S9T6   A0A2A3E567   A0A023FDN1   A0A088A5C6   L7M236   I4DKZ6   E2B644   A0A158NE98   A0A131XK65   A0A1Z5KUC4   A0A2M3ZCL2   S4P859   A0A1E1WWR5   A0A182M3R1   A0A182T5C5   A0A182QWL4   A0A182VP53   W5JT59   B0WG50   A0A182TD08   A0A182W1R4   Q1HRB0   B7Q8S0   A0A182J3A0   Q7PZ71   A0A026WWS9   A0A023EB25   A0A0A9YC03   B4NL38   K7J654   A0A1L8DGT4   T1JIW1   J3JX64   A0A2J7RDC0   A0A067RG04   A0A1B0DCT9   A0A087UUU0   A0A336MR99   A0A2P8YTY8   A0A0K8TQV5   A0A0N1ICU4   A0A1J1J5Q8   A0A224XUY0   A0A2R7X5X0   A0A0P4VU72   A0A0V0G6S3   A0A023F9Q9   R4FP98   A0A139WKK2   A0A232F139   A0A1W4VRH2   B4LW36   B4QTR1   A0A1A9YUG9   A0A1I8MF06   B4K516   A0A1A9XMZ3   A0A1B0BYN5   Q29BZ5   A0A1B2AKT8   B4GPF1   B4PV58   A0A3S3SRG2   A0A1I8NQ23   B3M041   A0A0L0C6D3   B4HH58   B4JEJ1   B3P700   A0A1L8EI69   A0A1B0A8T4   A0A1A9WC26   A0A0M4ESL5   Q9VC49   A0A1V9XMQ6   A0A3B3TG71   A0A2P6L1A8   E9G2Q6   A0A0P5E8Z7   A0A1L8FNC0   A0A0B8RQD1   A0A1W7RDZ1   A0A2G9RRN0   H3BDL8  

Pubmed

19121390    27289101    28756777    21719571    26131772    25576852    + More
22651552    20798317    21347285    28049606    28528879    23622113    28503490    20920257    23761445    17204158    17510324    12364791    14747013    17210077    24508170    30249741    24945155    26483478    25401762    17994087    20075255    22516182    24845553    29403074    26369729    26354079    27129103    25474469    18362917    19820115    28648823    25315136    15632085    17550304    26108605    10731132    12537572    12537569    28327890    29240929    21292972    27762356    25476704    26358130    9215903   

EMBL

BABH01038518    LJIJ01008981    ODM59412.1    KQ435729    KOX77626.1    KQ978023    + More
KYM97913.1    KZ150400    PZC71018.1    GGLE01003893    MBY08019.1    KQ414633    KOC67041.1    KQ434846    KZC08357.1    NWSH01001287    PCG71841.1    RSAL01000012    RVE53497.1    DQ250595    ABB53243.1    GL888182    EGI65706.1    GAMD01002411    JAA99179.1    GFDL01000780    JAV34265.1    GBZX01002988    JAG89752.1    KZ288364    PBC26877.1    GBBK01004496    JAC19986.1    GACK01006643    JAA58391.1    AK401964    BAM18586.1    GL445914    EFN88833.1    ADTU01013180    GEFH01001058    JAP67523.1    GFJQ02008277    JAV98692.1    GGFM01005457    MBW26208.1    GAIX01006086    JAA86474.1    GFAC01007967    JAT91221.1    AXCM01000696    AXCN02001106    ADMH02000153    GGFL01004256    ETN67567.1    MBW68434.1    DS231923    EDS26746.1    DQ440184    CH478464    ABF18217.1    EAT32936.1    ABJB010092256    DS885859    EEC15242.1    AXCP01002612    AAAB01008986    EAA00426.2    KK107079    QOIP01000010    EZA60156.1    RLU18042.1    JXUM01133835    GAPW01006872    GAPW01006871    KQ568034    JAC06727.1    KXJ69178.1    GBHO01014986    GBRD01007329    JAG28618.1    JAG58492.1    CH964272    EDW84241.1    GFDF01008426    JAV05658.1    JH431663    BT127832    AEE62794.1    NEVH01005291    PNF38829.1    KK852528    KDR21983.1    AJVK01014224    KK121744    KFM81129.1    UFQT01002272    SSX33064.1    PYGN01000360    PSN47704.1    GDAI01000864    JAI16739.1    KQ460891    KPJ10847.1    CVRI01000067    CRL06806.1    GFTR01000059    JAW16367.1    KK857460    PTY27194.1    GDKW01001013    JAI55582.1    GECL01002463    JAP03661.1    GBBI01000495    JAC18217.1    ACPB03000717    GAHY01000989    JAA76521.1    KQ971326    KYB28470.1    NNAY01001356    OXU24260.1    CH940650    EDW66541.1    CM000364    EDX14265.1    CCAG010023992    CH933806    EDW13987.1    JXJN01022731    CM000070    EAL26851.1    KX531983    ANY27793.1    CH479186    EDW39034.1    CM000160    EDW98907.1    NCKU01000001    RWS18055.1    CH902617    EDV41998.1    JRES01000835    KNC27948.1    CH480815    EDW43534.1    CH916369    EDV93122.1    CH954182    EDV53820.1    GFDG01000516    JAV18283.1    CP012523    ALC38953.1    ALC40095.1    AE014297    AY119184    MNPL01007347    OQR74799.1    MWRG01002678    PRD32368.1    GL732530    EFX86088.1    GDIP01146563    LRGB01000512    JAJ76839.1    KZS18525.1    CM004478    OCT73083.1    GBSH01002306    JAG66720.1    GDAY02002065    JAV49367.1    KV936457    PIO30572.1    AFYH01030539   

Proteomes

UP000005204    UP000094527    UP000053105    UP000078542    UP000053825    UP000076502    + More
UP000218220    UP000283053    UP000192223    UP000075884    UP000007755    UP000242457    UP000005203    UP000008237    UP000005205    UP000075883    UP000075901    UP000075886    UP000075903    UP000000673    UP000002320    UP000075902    UP000075920    UP000008820    UP000001555    UP000075880    UP000007062    UP000053097    UP000279307    UP000069940    UP000249989    UP000007798    UP000002358    UP000235965    UP000027135    UP000092462    UP000054359    UP000245037    UP000053240    UP000183832    UP000015103    UP000007266    UP000215335    UP000192221    UP000008792    UP000000304    UP000092444    UP000095301    UP000009192    UP000092443    UP000092460    UP000001819    UP000008744    UP000002282    UP000285301    UP000095300    UP000007801    UP000037069    UP000001292    UP000001070    UP000008711    UP000092445    UP000091820    UP000092553    UP000000803    UP000192247    UP000261540    UP000000305    UP000076858    UP000186698    UP000008672   

PRIDE

H9J897    Q9VC49   

Pfam

PF01194   RNA_pol_N

Interpro

IPR023580   RNA_pol_su_RPB10        + More
IPR020789   RNA_pol_suN_Zn-BS       
IPR000268   RNAP_N/Rpb10       

SUPFAM

SSF46924   SSF46924       

ProteinModelPortal

H9J897   A0A1D2M0I2   A0A0M9A6T5   A0A195CCV1   A0A2W1B5A0   A0A2R5LEX0   + More
A0A0L7R8F3   A0A154P951   A0A2A4JIP6   A0A3S2P014   A0A1W4XSF6   A0A3F2YW19   Q2XUC6   F4WJC8   T1DHD9   A0A1Q3G365   A0A0C9S9T6   A0A2A3E567   A0A023FDN1   A0A088A5C6   L7M236   I4DKZ6   E2B644   A0A158NE98   A0A131XK65   A0A1Z5KUC4   A0A2M3ZCL2   S4P859   A0A1E1WWR5   A0A182M3R1   A0A182T5C5   A0A182QWL4   A0A182VP53   W5JT59   B0WG50   A0A182TD08   A0A182W1R4   Q1HRB0   B7Q8S0   A0A182J3A0   Q7PZ71   A0A026WWS9   A0A023EB25   A0A0A9YC03   B4NL38   K7J654   A0A1L8DGT4   T1JIW1   J3JX64   A0A2J7RDC0   A0A067RG04   A0A1B0DCT9   A0A087UUU0   A0A336MR99   A0A2P8YTY8   A0A0K8TQV5   A0A0N1ICU4   A0A1J1J5Q8   A0A224XUY0   A0A2R7X5X0   A0A0P4VU72   A0A0V0G6S3   A0A023F9Q9   R4FP98   A0A139WKK2   A0A232F139   A0A1W4VRH2   B4LW36   B4QTR1   A0A1A9YUG9   A0A1I8MF06   B4K516   A0A1A9XMZ3   A0A1B0BYN5   Q29BZ5   A0A1B2AKT8   B4GPF1   B4PV58   A0A3S3SRG2   A0A1I8NQ23   B3M041   A0A0L0C6D3   B4HH58   B4JEJ1   B3P700   A0A1L8EI69   A0A1B0A8T4   A0A1A9WC26   A0A0M4ESL5   Q9VC49   A0A1V9XMQ6   A0A3B3TG71   A0A2P6L1A8   E9G2Q6   A0A0P5E8Z7   A0A1L8FNC0   A0A0B8RQD1   A0A1W7RDZ1   A0A2G9RRN0   H3BDL8  

PDB

6O9L     E-value=7.20477e-30,     Score=318

KEGG

101739452    K03007 DNA-directed RNA polymerases I, II, and III subunit RPABC5 | (RefSeq) DNA-directed RNA polyme

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0003899   GO:0006351   GO:0003677   GO:0008270   GO:0005665   GO:0006383   GO:0006366   GO:0005736   GO:0005666   GO:0006360   GO:0016021   GO:0016887   GO:0007166   GO:0016020   GO:0000287   GO:0006281   GO:0006259  

PANTHER

PTHR23431  

Subcellular location

Nucleus  

Length:

67

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00461

Exp number, first 60 AAs:

0.0044

Total prob of N-in:

0.34767

outside

1  -  67

 

 

Pi

239.552287

Theta

181.505474

Tajima's D

0.980557

CLR

0.27275

CSRT

0.649567521623919

Interpretation

Uncertain