SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15991
Annotation
PREDICTED:_plexin_A3_[Plutella_xylostella]
Location in the cell
Extracellular   Reliability : 1.821 PlasmaMembrane   Reliability : 1.68
 

Sequence

CDS
ATGTCTCTCATTCTTCTTTGTACTGCATGTTTCGAAGACAAAAATGCGGAATTCCAACATTTGGTTGTGGACAGAAACAGTGGTCACGTTTTTATTGGAGCTGTGAATAAGATTTATGAGTTATCTGAAGATTTAGCGATCGAAAAGTGGATTCCAACCGGACCTCTAAATAAGACTGATGATAAATTAACTGATAATGTTAATAAAGTGTTGATTCTTGATGACTCAGGTCGATTGATCACTTGTGGATCAGCGCTTGGTATCTGCTCAATTCGGAACATAACTAATATCTACATCGGTTGTGATGTTCCCATTACCGTTGTTTCTGACGAAGAGAAAGTTTCAACTGTAGCATTTCTAGCAGCCGGTCCCTTAAGTTCCAATCGTTCTACACGAATCCTGTACTTAGCATCTGAAGTAAAAGACAATAAAGACATCCCTTCAATAACCGGTCGATTGTTGGATAATAGGAATGATTTTGAAATAGCCAAAGTATTATCGGAACATAATGAAATCAACCAAGTTAAGGGAGCAGACATACATAATAATTTCTTGTATGCAAAAGATAACAATGTTAACTATGTATATGGTTTTAGTAGTGGAATATACAGTTATTTTTTGAAGACGCAGAAAAAAGAAGATGGCGATTATCACAGTGTTATAGCTCGGGTATGTCAAGATGACGAAAATTATTATAATTCGTACACCGAAATACCCATAACATGCAAGAATACAGATAATACTTCTTACAATCTGGCACAGACAGGGTTTGTTCAGAAAGCTGCTGGTTTTTTAGCCCAGTCTTTGGAAATATCTAGCAACGATGACGTCCTCTACGCCGCATTTTGCCCTGATAATGAAAAATCGTCATCTCCTTTAGAAAAGTCAGTGTTATGTGTTTTTTCCCTTCAGAATATCCGTAAAAAGTTTGCCGAAAATATTAAAAAATGCTTTAACGGTAATGGGATGAGAAGTATTGGACTAAAGAAACCAGAATCGTGTCTTAAAACTGATTTACAAACAGACTATGAAGACGTTTGTGGTTTAGGTGTAAATGTACCGCTTGATGGTAGAATTCCCTTAGAAGGAAATGCCCTAATATACTTTGCTGATAAAGTTTCAGCTTTAATTGCAACAAATGTTCGAGATCACAGTGTTATTATTGCTGGCACTGCGAGTGGGCGTTTAAAAAAAGTAATTGCCGATAACGCAACTCTTGGTGTCGAATACCAAGACATCATAGTCCACGAAAGTCATCCCATTATGAAAGATCTTATCTTCAGTCATAATGATGAGTACTTATACGCATTAACCAAAGTTTTTAAGATACCAATTCAAGAGTGCAGTGATTATAAGTCATACACAGAATGCTTTCAGGACATTTATTGTGGATGGTGTTCACCTAAACAAAAGTGTACTATTGAATCGGACTGCAAGTATGCTCATTATAAAGACCCACTTTTTTGGATATCTTCGGGCAGTAAATTTCAGGCGGTGATTACTGAAGTTAAACCTAATAATATATTTATTACATCAGAAACGTTACTGACGGTCAAAATAGAGAATGTCGTTAACTTAATCGATCAGATGTTTTGCAATTTTGTCCTTGATGGTGTGTCTTATGTTACAAATGGAACACAAATTGAAAAAGGTACTCAGTGTAAAACTCCAATATTTAATTCGAATAAAACTTATGGTCGCGGTCTAGATCCTATTCCTATTAAATTGTTGATTCAAAATTCAATAACAGAACCGGCTTTTGCAGCGACGATAGTGAATTTTCTTGATTGTAACACCTTTACCTCGTGCACTGAATGTATAAAAAAAACTGATTGTAAATAG
Protein
MSLILLCTACFEDKNAEFQHLVVDRNSGHVFIGAVNKIYELSEDLAIEKWIPTGPLNKTDDKLTDNVNKVLILDDSGRLITCGSALGICSIRNITNIYIGCDVPITVVSDEEKVSTVAFLAAGPLSSNRSTRILYLASEVKDNKDIPSITGRLLDNRNDFEIAKVLSEHNEINQVKGADIHNNFLYAKDNNVNYVYGFSSGIYSYFLKTQKKEDGDYHSVIARVCQDDENYYNSYTEIPITCKNTDNTSYNLAQTGFVQKAAGFLAQSLEISSNDDVLYAAFCPDNEKSSSPLEKSVLCVFSLQNIRKKFAENIKKCFNGNGMRSIGLKKPESCLKTDLQTDYEDVCGLGVNVPLDGRIPLEGNALIYFADKVSALIATNVRDHSVIIAGTASGRLKKVIADNATLGVEYQDIIVHESHPIMKDLIFSHNDEYLYALTKVFKIPIQECSDYKSYTECFQDIYCGWCSPKQKCTIESDCKYAHYKDPLFWISSGSKFQAVITEVKPNNIFITSETLLTVKIENVVNLIDQMFCNFVLDGVSYVTNGTQIEKGTQCKTPIFNSNKTYGRGLDPIPIKLLIQNSITEPAFAATIVNFLDCNTFTSCTECIKKTDCK

Summary

EMBL
GDQN01005376    JAT85678.1    AGBW02009093    OWR51703.1    BABH01038331    JTDY01001245    + More
KOB74417.1    RSAL01000124    RVE46604.1    KQ458880    KPJ04623.1    KQ460154    KPJ17271.1    GALX01000469    JAB67997.1    NWSH01002687    PCG67684.1    ODYU01010027    SOQ54840.1    ACPB03006387    ACPB03006388    ACPB03006389    ACPB03006390    ACPB03006391    ACPB03006392    GFTR01008906    JAW07520.1    GEDC01021652    JAS15646.1    KQ971307    EFA11552.1    QOIP01000002    RLU25962.1    KK852819    KDR15610.1    GECZ01031976    JAS37793.1    GECU01035365    GECU01007742    JAS72341.1    JAS99964.1    GEBQ01013906    JAT26071.1    GDHC01002634    JAQ15995.1    GEZM01087469    JAV58669.1    GDIQ01212280    JAK39445.1    HACA01024257    CDW41618.1    GDIQ01229872    JAK21853.1    ABLF02030752    AJWK01009369    GL732544    EFX81191.1    GFXV01004073    MBW15878.1    GGMR01002465    MBY15084.1    GDIQ01220680    JAK31045.1    GDIP01113918    JAL89796.1    GDIQ01155801    JAK95924.1    GDIQ01073376    JAN21361.1    GDIQ01268430    GDIQ01078474    GDIQ01064787    JAN29950.1    GDIP01090022    JAM13693.1    GDIQ01092468    JAL59258.1    GDIQ01056588    JAN38149.1    DS235022    EEB10621.1    GDIP01029542    JAM74173.1    GDIQ01205530    JAK46195.1    GDIQ01231971    JAK19754.1    GDIQ01016396    JAN78341.1    GDIQ01251968    JAJ99756.1    GGMS01013020    MBY82223.1    GBYB01008998    JAG78765.1    GDIQ01175641    JAK76084.1    GBYB01009006    JAG78773.1    UFQS01000844    UFQT01000844    SSX07239.1    SSX27582.1    GGFM01008641    MBW29392.1    CH916380    EDV90907.1    KA648835    AFP63464.1    CH940665    KRF85332.1    CM000831    ACY70534.1    EDW71090.2    KRF85333.1    CH954184    KQS21463.1    CH475404    EAL29263.3    EDV45216.1    CH964272    KRF99821.1    EDW83580.1    OUUW01000017    SPP88949.1    CH480855    EDW52645.1    CH479285    EDW25269.1    CH933813    EDW10926.2    KRG07293.1    CP012527    ALC48084.1    GANO01002511    JAB57360.1    CM000161    KRK04985.1    EDW99343.1    KRK04984.1    KRK04986.1    KRK04987.1    AE014135    AFH06788.1    AAF59394.1    AF106932    AAD09425.1    NCKU01000060    NCKU01000056    NCKU01000041    RWS17561.1    RWS17588.1    RWS17739.1    JRES01000411    KNC31483.1    CH902659    EDV33932.2    KPU74854.1    AJVK01021786    AJVK01021787    AJVK01021788    AJVK01021789    AJVK01021790    GDIQ01187885    JAK63840.1    GAMC01009332    JAB97223.1    AXCN02001219    APCN01004046    AAAB01008846    EAA06230.3    GGFJ01000169    MBW49310.1    GGFJ01000153    MBW49294.1    GGFM01001046    MBW21797.1    GGFL01004444    MBW68622.1    GGFL01014694    MBW78872.1    GDHF01020970    GDHF01016647    JAI31344.1    JAI35667.1    GDHF01030966    GDHF01022027    GDHF01011667    JAI21348.1    JAI30287.1    JAI40647.1    QCYY01001562    ROT77169.1    GAKP01020725    GAKP01020724    JAC38228.1    JXJN01025691   
Pfam
PF18020   TIG_2        + More
PF08337   Plexin_cytopl
PF17960   TIG_plexin
PF01403   Sema
PF01833   TIG
PF01437   PSI
PF16076   Acyltransf_C
PF01553   Acyltransferase
Interpro
IPR041019   TIG1_plexin        + More
IPR016201   PSI       
IPR008936   Rho_GTPase_activation_prot       
IPR013548   Plexin_cytoplasmic_RasGAP_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR031146   Invert_Plexin-B       
IPR036352   Semap_dom_sf       
IPR002909   IPT_dom       
IPR014756   Ig_E-set       
IPR002165   Plexin_repeat       
IPR013783   Ig-like_fold       
IPR001627   Semap_dom       
IPR041362   TIG2_plexin       
IPR031148   Plexin       
IPR032098   Acyltransf_C       
IPR002123   Plipid/glycerol_acylTrfase       
SUPFAM
SSF81296   SSF81296        + More
SSF101912   SSF101912       
SSF48350   SSF48350       
Gene 3D
PDB
6FKN     E-value=1.94003e-100,     Score=936

Ontologies

Topology

Length:
613
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0508
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00071
outside
1  -  613
 
 

Population Genetic Test Statistics

Pi
341.266201
Theta
241.630171
Tajima's D
1.725857
CLR
0.27038
CSRT
0.832508374581271
Interpretation
Uncertain
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