SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15982
Pre Gene Modal
BGIBMGA005730
Annotation
Carbonyl_reductase_[NADPH]_1_[Papilio_xuthus]
Location in the cell
Cytoplasmic   Reliability : 1.164
 

Sequence

CDS
ATGTCAAACGATTATATAGCAATTGTTACGGGTGCTAATAAAGGATTAGGATTTGCTATAGTGAAAGATCTTTGTGAAAATTTTAAAGGTACTGTATATCTTACATCACGTGACGAAACCCGTGGAAATGAAGCATGTGAAATACTGAGAAAATTAGGACTAAAACCAGAATATCATCAATTAGACGTATCCGACCCTCAGAGTGTCCAAAGATTTGCATCTTACATTCAAAACAAGCGTGTTGAGATTTTGATTAACAACGCCGGCATACTGTTTTTAAAAGATGCAAAGGAACCAAAATTATTTCAAGCTGAACAGACAATTTTAACTAACTACTTTGCGTTGGTTAATTTCTGTGAAGCAATATTGCCTTGCGTCAAAGAAGGCGGGAAAATCATTAACGTTTCAAGTTCTTCCGGGCACCTCTCAAGAATCCCCTCGGCAGATTTACGAAAAAGATTCATGTGCGAAAATTTGACACTAAACGAACTCAATTTATTGATGCGCAACTATATGGAAGCTGTAAAGAACAATGAAGAAATAGATGAAGGCTGGGGAGATTCGCCTTACGTTATTTCAAAAGTAGGAGTTAATGCATATACGTTTATACTCAATAGAAAATTATCATCCAACGGTATTATCGTGAATTGCGTGCATCCAGGCTACGTGATGTCGGACATGACAAGAGGAGCCGGAAACGTTAGTCCGGAACAAGCCGCGAAATTGGTGACGGAAATAGCACTCAATTCAAAAACCGGCGGTCTGTACATATGGCATAACGGGGACACCGTCAATTGGAATGGCCCTGACCCACGCGGGTTTATAGACGGGAAAATTTAA
Protein
MSNDYIAIVTGANKGLGFAIVKDLCENFKGTVYLTSRDETRGNEACEILRKLGLKPEYHQLDVSDPQSVQRFASYIQNKRVEILINNAGILFLKDAKEPKLFQAEQTILTNYFALVNFCEAILPCVKEGGKIINVSSSSGHLSRIPSADLRKRFMCENLTLNELNLLMRNYMEAVKNNEEIDEGWGDSPYVISKVGVNAYTFILNRKLSSNGIIVNCVHPGYVMSDMTRGAGNVSPEQAAKLVTEIALNSKTGGLYIWHNGDTVNWNGPDPRGFIDGKI

Summary

Similarity
Belongs to the short-chain dehydrogenases/reductases (SDR) family.
EMBL
BABH01038482    KQ458565    KPJ05804.1    AGBW02008280    OWR53834.1    ODYU01010279    + More
SOQ55272.1    KQ459933    KPJ19288.1    JTDY01000199    KOB78335.1    JTDY01008746    KOB64420.1    BABH01037460    GBBI01001358    JAC17354.1    GEDC01025309    JAS11989.1    ODYU01005228    SOQ45880.1    GFTR01004535    JAW11891.1    NWSH01006830    PCG63222.1    SOQ45879.1    KZ288282    PBC29609.1    GEDC01025189    JAS12109.1    GECZ01017087    GECZ01016387    JAS52682.1    JAS53382.1    GBHO01032133    GBHO01032130    GBRD01004506    GDHC01018141    JAG11471.1    JAG11474.1    JAG61315.1    JAQ00488.1    GECU01027825    GECU01017498    JAS79881.1    JAS90208.1    GDKW01001428    JAI55167.1    GEBQ01024723    JAT15254.1    ACPB03015037    GAHY01001144    JAA76366.1    GECZ01027302    JAS42467.1    GEBQ01008269    JAT31708.1    KQ460466    KPJ14619.1    NEVH01019373    PNF22703.1    BT126507    AEE61471.1    KQ971352    EFA07299.1    KPJ14621.1    KQ459597    KPI95235.1    GEBQ01006036    JAT33941.1    GEZM01088470    JAV58180.1    ABLF02035856    GECU01015736    JAS91970.1    GEDC01027847    GEDC01011823    JAS09451.1    JAS25475.1    GBHO01042553    GBRD01010365    JAG01051.1    JAG55459.1    GGMS01012953    MBY82156.1    KQ414657    KOC65686.1    GDRN01075845    JAI62981.1    GDIQ01245914    GDIQ01172784    GDIP01056074    LRGB01002384    JAK05811.1    JAM47641.1    KZS07833.1    GALX01002952    JAB65514.1    ABLF02035864    KK853628    KDR03826.1    GFWV01004268    MAA28998.1    BT126771    AEE61733.1    GACK01005752    JAA59282.1    APGK01025878    KB740605    ENN80024.1    GEZM01096800    GEZM01096799    JAV54571.1    GDIP01118656    JAL85058.1    GDIQ01010210    JAN84527.1    KK854031    PTY09833.1    LNIX01000002    OXA59506.1    GFPF01005493    MAA16639.1    ODYU01003722    SOQ42855.1    GFJQ02007744    JAV99225.1    GEBQ01010531    JAT29446.1    KQ434825    KZC07366.1    GL732553    EFX79259.1    KQ976398    KYM92777.1    LBMM01004395    KMQ92468.1    GFPF01005492    MAA16638.1    GEZM01008630    JAV94726.1    GGMR01011273    MBY23892.1    ADTU01001619    APGK01054937    KB741253    KB632340    ENN71824.1    ERL92968.1    GADI01004071    JAA69737.1    GFXV01004412    MBW16217.1    ADTU01007360    GFWV01003337    MAA28067.1    GDIP01100655    JAM03060.1    GDIQ01210473    JAK41252.1    GBBK01005242    JAC19240.1    JO844144    AEO35761.1    GEFH01002778    JAP65803.1    GL450619    EFN80721.1    GBBM01002050    JAC33368.1    GEFM01004999    JAP70797.1    GADI01006938    JAA66870.1    KK107519    QOIP01000009    EZA49372.1    RLU19123.1    GFAC01003037    JAT96151.1    GBBM01002051    JAC33367.1    KQ977259    KYN04529.1    GGLE01006223    MBY10349.1    KK120274    KFM77920.1    JTDY01003824    KOB68949.1    GEFH01004098    JAP64483.1    GBBK01003249    JAC21233.1    KQ976530    KYM81685.1    GDIP01246408    JAI76993.1    IAAA01002236    IAAA01002237    LAA00596.1    GEDC01023884    JAS13414.1    GL438297    EFN69172.1    GDIP01188548    JAJ34854.1    GBHO01037010    JAG06594.1    GFPF01006553    MAA17699.1    GBRD01012199    JAG53625.1   
Pfam
PF00106   adh_short
Interpro
IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       
SUPFAM
SSF51735   SSF51735       
PDB
1N5D     E-value=6.9108e-44,     Score=445

Ontologies

Topology

Length:
279
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.08238
Exp number, first 60 AAs:
0.05527
Total prob of N-in:
0.06765
outside
1  -  279
 
 

Population Genetic Test Statistics

Pi
183.765233
Theta
159.833428
Tajima's D
0.435816
CLR
204.493572
CSRT
0.495275236238188
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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