Gene

KWMTBOMO15981

Pre Gene Modal

BGIBMGA005734

Annotation

PREDICTED:_uncharacterized_protein_LOC101739826_[Bombyx_mori]

Location

Bomo_Chr27(+):5073613-5075923      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.354

CDS

ATGAACAACGTACGTAGTGGCGAGCCGGCGGGCCGGGCGGCGGGCGATGGCGACGACGACTTAGACTTTGATCCGTTTAAAGAGACACAGAAAGCGTTTGCGGAACTCATGGAGAATGAAATGATGCAAAATGCCGTTTCGGGCGGTGACAACGCACGTCGATCCAGGTTAGCGCCGCCGGGCTTCAGTCATGTCAATAACACGTACGGCGCCGGCGGGCCGCGCCTCCACGCCGCACAACAAGGGTATAACACGAACAGTCCGATGTTCTCGGACTGGACGCAGATGGACCCCGCGATCATGTCGACTTCGGTGAGCGGCGGCAGCGGCCTGTCGCAGCACCAGCACGACATGTTCGTGCGGTTCAACGCGCTGGGCGTGACGCAGGCGCCGCCCGCCCCGCCCGCCCAGCCCGCGCCCGCCTGGCCGCCCTACGTGCCCCTGCCGCCCGGCTTCACGCCCGCGCAGGCCGCCCGCCCCCGCCCCGAACCCATCGACGCCAAGTGA

Protein

MNNVRSGEPAGRAAGDGDDDLDFDPFKETQKAFAELMENEMMQNAVSGGDNARRSRLAPPGFSHVNNTYGAGGPRLHAAQQGYNTNSPMFSDWTQMDPAIMSTSVSGGSGLSQHQHDMFVRFNALGVTQAPPAPPAQPAPAWPPYVPLPPGFTPAQAARPRPEPIDAK

Uniprot

H9J892   A0A1E1WFM8   A0A3S2TRY5   A0A0N0PAE7   A0A0N1ICA7   A0A0J9QZL9   + More
M9PB92   B4Q989   A0A0J9R103   Q8IPB9   A0A0J9R048   M9MRH8   A0A0J9TKJ7   A0A0J9TKJ3   M9PCL9   Q9VKX1   M9PFI0   A0A0R1DLB6   A0A0R1DLB7   A0A0R1DM82   B4NZN4   A0A0R1DL08   A0A0R1DNG3   A0A0Q5WH84   B3N9N8   A0A0Q5WM06   A0A0Q5WAD0   A0A0Q5WAF8   A0A0Q5WAU7   A0A1B0D1N7   T1D264   A0A1B6DLJ4   A0A1B6DPS1   A0A0P9BQ25   A0A0N8NZC1   A0A0P8XGQ5   A0A0P8Y4K4   A0A0P8XGI1   B3MJG7  

Pubmed

19121390    26354079    22936249    10731132    12537568    12537572    + More
12537573    12537574    16110336    17569856    17569867    17994087    26109357    26109356    30692204    17550304    24330624    18057021   

EMBL

BABH01038482    GDQN01005327    GDQN01004510    JAT85727.1    JAT86544.1    RSAL01000012    + More
RVE53505.1    KQ458565    KPJ05805.1    KQ459933    KPJ19287.1    CM002910    KMY89527.1    AE014134    AGB92878.1    CM000361    EDX04531.1    KMY89519.1    KMY89524.1    AAN10750.1    ADV37027.1    KMY89521.1    ADV37026.1    KMY89522.1    KMY89525.1    KMY89520.1    AGB92879.1    BT003543    AAF52936.2    AAF52937.2    AAN10747.1    AAN10748.1    AAN10749.1    AAO39547.1    AGB92877.1    CM000157    KRJ98044.1    KRJ98042.1    KRJ98046.1    EDW88818.1    KRJ98043.1    KRJ98045.1    CH954177    KQS70437.1    EDV58533.1    KQS70434.1    KQS70438.1    KQS70435.1    KQS70436.1    AJVK01010347    AJVK01010348    GALA01001768    JAA93084.1    GEDC01010808    JAS26490.1    GEDC01009637    JAS27661.1    CH902620    KPU73909.1    KPU73908.1    KPU73906.1    KPU73904.1    KPU73905.1    KPU73907.1    KPU73903.1    EDV32335.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000053240    UP000000803    UP000000304    + More
UP000002282    UP000008711    UP000092462    UP000007801   

PRIDE

H9J892    Q8IPB9    M9PCL9    Q9VKX1   

Pfam

PF00076   RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR000571   Znf_CCCH       
IPR013083   Znf_RING/FYVE/PHD       
IPR039515   NOT4_mRING-HC-C4C4       
IPR003954   RRM_dom_euk       
IPR034261   CNOT4_RRM       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR039780   Mot2       
IPR000504   RRM_dom       
IPR001841   Znf_RING       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.40.10     3.30.70.330    

CDD

cd16618  mRING-HC-C4C4_CNOT4
cd12438  RRM_CNOT4

ProteinModelPortal

H9J892   A0A1E1WFM8   A0A3S2TRY5   A0A0N0PAE7   A0A0N1ICA7   A0A0J9QZL9   + More
M9PB92   B4Q989   A0A0J9R103   Q8IPB9   A0A0J9R048   M9MRH8   A0A0J9TKJ7   A0A0J9TKJ3   M9PCL9   Q9VKX1   M9PFI0   A0A0R1DLB6   A0A0R1DLB7   A0A0R1DM82   B4NZN4   A0A0R1DL08   A0A0R1DNG3   A0A0Q5WH84   B3N9N8   A0A0Q5WM06   A0A0Q5WAD0   A0A0Q5WAF8   A0A0Q5WAU7   A0A1B0D1N7   T1D264   A0A1B6DLJ4   A0A1B6DPS1   A0A0P9BQ25   A0A0N8NZC1   A0A0P8XGQ5   A0A0P8Y4K4   A0A0P8XGI1   B3MJG7  

KEGG

101739826    K10643 CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] | (RefSeq) uncharacterized LOC10173982

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0046872   GO:0004842   GO:0030014   GO:0016567   GO:0005737   GO:0008270   GO:0046427  

PANTHER

PTHR12603  

Length:

168

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00289

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.14726

outside

1  -  168

 

 

Pi

183.259069

Theta

147.826992

Tajima's D

0.639743

CLR

0.200513

CSRT

0.554672266386681

Interpretation

Uncertain